Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03998 and CCNA_00464 are separated by 713 nucleotides
CCNA_03998: CCNA_03998 - GT1/WbuB-like N-acetyl-L-fucosamine transferase, at 475,532 to 476,800
_03998
CCNA_00464: CCNA_00464 - Undecaprenyl-phosphate sugar phosphotransferase-related protein, at 477,514 to 477,678
_00464
Position (kb) 475
476
477 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 474.553 kb on - strand at 474.553 kb on - strand at 474.553 kb on - strand at 474.554 kb on - strand at 474.564 kb on + strand at 474.572 kb on - strand at 474.592 kb on + strand at 474.592 kb on + strand at 474.592 kb on + strand at 474.599 kb on - strand at 474.600 kb on - strand at 474.600 kb on - strand at 474.600 kb on - strand at 474.636 kb on + strand at 474.636 kb on + strand at 474.636 kb on + strand at 474.644 kb on - strand at 474.677 kb on + strand at 474.703 kb on - strand at 474.820 kb on + strand at 474.820 kb on + strand at 474.832 kb on - strand at 474.869 kb on + strand at 474.877 kb on - strand at 474.877 kb on - strand at 474.877 kb on - strand at 474.927 kb on + strand at 474.937 kb on + strand at 474.984 kb on - strand at 474.989 kb on - strand at 475.000 kb on + strand at 475.005 kb on + strand at 475.008 kb on - strand at 475.008 kb on - strand at 475.008 kb on - strand at 475.013 kb on - strand at 475.023 kb on - strand at 475.028 kb on - strand at 475.028 kb on - strand at 475.032 kb on + strand at 475.033 kb on - strand at 475.040 kb on + strand at 475.040 kb on + strand at 475.045 kb on + strand at 475.045 kb on + strand at 475.053 kb on - strand at 475.053 kb on - strand at 475.057 kb on + strand at 475.060 kb on - strand at 475.067 kb on + strand at 475.067 kb on + strand at 475.067 kb on + strand at 475.067 kb on + strand at 475.067 kb on + strand at 475.070 kb on - strand at 475.075 kb on - strand at 475.078 kb on + strand at 475.084 kb on + strand at 475.121 kb on + strand at 475.143 kb on - strand at 475.145 kb on + strand at 475.164 kb on + strand at 475.212 kb on + strand at 475.227 kb on - strand at 475.260 kb on + strand at 475.260 kb on + strand at 475.260 kb on + strand at 475.268 kb on - strand at 475.286 kb on + strand at 475.304 kb on + strand at 475.354 kb on + strand at 475.357 kb on - strand at 475.378 kb on + strand at 475.386 kb on - strand at 475.386 kb on - strand at 475.386 kb on - strand at 475.386 kb on - strand at 475.388 kb on + strand at 475.388 kb on + strand at 475.396 kb on - strand at 475.417 kb on + strand at 475.444 kb on + strand at 475.444 kb on + strand at 475.446 kb on + strand at 475.447 kb on + strand at 475.454 kb on - strand at 475.455 kb on - strand at 475.466 kb on + strand at 475.495 kb on + strand at 475.511 kb on + strand at 475.511 kb on + strand at 475.511 kb on + strand at 475.511 kb on + strand at 475.512 kb on + strand at 475.519 kb on - strand at 475.519 kb on - strand at 475.520 kb on - strand at 475.521 kb on + strand at 475.532 kb on + strand at 475.534 kb on - strand at 475.537 kb on + strand at 475.555 kb on + strand at 475.555 kb on - strand at 475.579 kb on - strand at 475.580 kb on - strand at 475.600 kb on - strand at 475.630 kb on + strand at 475.675 kb on + strand, within CCNA_03998 at 475.676 kb on - strand, within CCNA_03998 at 475.707 kb on - strand, within CCNA_03998 at 475.774 kb on + strand, within CCNA_03998 at 475.803 kb on - strand, within CCNA_03998 at 475.832 kb on + strand, within CCNA_03998 at 475.861 kb on + strand, within CCNA_03998 at 475.878 kb on - strand, within CCNA_03998 at 475.885 kb on - strand, within CCNA_03998 at 475.900 kb on + strand, within CCNA_03998 at 475.906 kb on + strand, within CCNA_03998 at 475.919 kb on + strand, within CCNA_03998 at 475.921 kb on - strand, within CCNA_03998 at 475.927 kb on - strand, within CCNA_03998 at 475.927 kb on - strand, within CCNA_03998 at 475.927 kb on - strand, within CCNA_03998 at 475.927 kb on - strand, within CCNA_03998 at 475.934 kb on - strand, within CCNA_03998 at 475.957 kb on + strand, within CCNA_03998 at 475.965 kb on - strand, within CCNA_03998 at 476.034 kb on - strand, within CCNA_03998 at 476.115 kb on + strand, within CCNA_03998 at 476.117 kb on - strand, within CCNA_03998 at 476.142 kb on + strand, within CCNA_03998 at 476.168 kb on + strand, within CCNA_03998 at 476.183 kb on + strand, within CCNA_03998 at 476.193 kb on - strand, within CCNA_03998 at 476.203 kb on - strand, within CCNA_03998 at 476.209 kb on - strand, within CCNA_03998 at 476.212 kb on + strand, within CCNA_03998 at 476.222 kb on + strand, within CCNA_03998 at 476.234 kb on + strand, within CCNA_03998 at 476.250 kb on - strand, within CCNA_03998 at 476.257 kb on + strand, within CCNA_03998 at 476.272 kb on - strand, within CCNA_03998 at 476.298 kb on + strand, within CCNA_03998 at 476.306 kb on - strand, within CCNA_03998 at 476.319 kb on - strand, within CCNA_03998 at 476.344 kb on + strand, within CCNA_03998 at 476.357 kb on + strand, within CCNA_03998 at 476.357 kb on + strand, within CCNA_03998 at 476.357 kb on + strand, within CCNA_03998 at 476.365 kb on - strand, within CCNA_03998 at 476.365 kb on - strand, within CCNA_03998 at 476.378 kb on + strand, within CCNA_03998 at 476.378 kb on + strand, within CCNA_03998 at 476.380 kb on + strand, within CCNA_03998 at 476.388 kb on - strand, within CCNA_03998 at 476.415 kb on + strand, within CCNA_03998 at 476.423 kb on - strand, within CCNA_03998 at 476.430 kb on + strand, within CCNA_03998 at 476.480 kb on - strand, within CCNA_03998 at 476.492 kb on - strand, within CCNA_03998 at 476.536 kb on + strand, within CCNA_03998 at 476.552 kb on + strand, within CCNA_03998 at 476.562 kb on + strand, within CCNA_03998 at 476.567 kb on + strand, within CCNA_03998 at 476.570 kb on - strand, within CCNA_03998 at 476.580 kb on - strand, within CCNA_03998 at 476.590 kb on + strand, within CCNA_03998 at 476.603 kb on + strand, within CCNA_03998 at 476.608 kb on + strand, within CCNA_03998 at 476.609 kb on + strand, within CCNA_03998 at 476.666 kb on + strand, within CCNA_03998 at 476.674 kb on - strand at 476.676 kb on + strand at 476.707 kb on + strand at 476.732 kb on + strand at 476.735 kb on - strand at 476.740 kb on - strand at 476.748 kb on + strand at 476.748 kb on + strand at 476.748 kb on + strand at 476.756 kb on - strand at 476.756 kb on - strand at 476.758 kb on + strand at 476.807 kb on - strand at 476.808 kb on + strand at 476.816 kb on - strand at 476.816 kb on - strand at 476.816 kb on - strand at 476.816 kb on - strand at 476.834 kb on + strand at 476.866 kb on + strand at 476.872 kb on + strand at 476.872 kb on + strand at 476.880 kb on - strand at 476.888 kb on + strand at 476.910 kb on + strand at 476.918 kb on - strand at 477.212 kb on + strand at 477.212 kb on + strand at 477.219 kb on + strand at 477.220 kb on + strand at 477.246 kb on + strand at 477.258 kb on - strand at 477.264 kb on - strand at 477.289 kb on + strand at 477.297 kb on - strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.312 kb on - strand at 477.312 kb on - strand at 477.312 kb on - strand at 477.312 kb on - strand at 477.330 kb on - strand at 477.370 kb on - strand at 477.382 kb on + strand at 477.388 kb on - strand at 477.390 kb on - strand at 477.458 kb on + strand at 477.469 kb on + strand at 477.474 kb on + strand at 477.477 kb on - strand at 477.487 kb on - strand at 477.488 kb on - strand at 477.495 kb on + strand at 477.503 kb on - strand at 477.504 kb on + strand at 477.514 kb on - strand at 477.550 kb on + strand, within CCNA_00464 at 477.551 kb on + strand, within CCNA_00464 at 477.556 kb on + strand, within CCNA_00464 at 477.558 kb on - strand, within CCNA_00464 at 477.558 kb on - strand, within CCNA_00464 at 477.558 kb on - strand, within CCNA_00464 at 477.558 kb on - strand, within CCNA_00464 at 477.564 kb on - strand, within CCNA_00464 at 477.574 kb on - strand, within CCNA_00464 at 477.576 kb on + strand, within CCNA_00464 at 477.584 kb on - strand, within CCNA_00464 at 477.584 kb on - strand, within CCNA_00464 at 477.619 kb on + strand, within CCNA_00464 at 477.632 kb on - strand, within CCNA_00464 at 477.673 kb on - strand at 477.684 kb on + strand at 477.684 kb on + strand at 477.692 kb on - strand at 477.729 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 474,553 - -0.5 474,553 - -0.1 474,553 - -0.9 474,554 - +1.3 474,564 + -0.7 474,572 - -1.8 474,592 + +0.4 474,592 + +0.2 474,592 + +0.0 474,599 - -0.2 474,600 - -0.5 474,600 - +0.3 474,600 - +0.3 474,636 + +0.3 474,636 + -1.4 474,636 + +1.4 474,644 - +0.6 474,677 + -0.1 474,703 - +0.2 474,820 + -0.2 474,820 + -0.3 474,832 - -0.3 474,869 + +0.1 474,877 - -0.6 474,877 - -0.1 474,877 - +0.2 474,927 + +0.6 474,937 + +0.3 474,984 - -0.3 474,989 - -0.4 475,000 + -0.3 475,005 + -0.2 475,008 - +0.2 475,008 - -2.9 475,008 - +0.2 475,013 - +0.3 475,023 - -1.2 475,028 - +0.5 475,028 - +0.6 475,032 + +0.3 475,033 - -0.3 475,040 + +0.3 475,040 + -2.2 475,045 + -0.0 475,045 + +0.2 475,053 - +0.4 475,053 - +0.5 475,057 + +0.1 475,060 - -1.3 475,067 + +0.3 475,067 + +1.1 475,067 + -1.0 475,067 + +0.2 475,067 + +0.0 475,070 - +0.6 475,075 - +0.2 475,078 + -0.6 475,084 + +0.6 475,121 + -0.3 475,143 - +0.4 475,145 + -0.1 475,164 + -0.5 475,212 + -0.5 475,227 - +0.7 475,260 + -0.2 475,260 + -1.1 475,260 + +0.0 475,268 - -0.3 475,286 + -0.1 475,304 + +1.1 475,354 + +0.7 475,357 - +0.9 475,378 + -0.4 475,386 - -0.5 475,386 - -0.8 475,386 - -1.8 475,386 - +0.2 475,388 + -0.5 475,388 + +0.6 475,396 - -0.7 475,417 + -0.0 475,444 + +0.3 475,444 + +0.6 475,446 + +0.3 475,447 + +0.4 475,454 - -0.1 475,455 - +0.2 475,466 + +0.2 475,495 + +0.2 475,511 + -0.5 475,511 + -0.2 475,511 + +1.3 475,511 + -0.8 475,512 + +0.4 475,519 - -0.6 475,519 - -0.3 475,520 - -1.6 475,521 + +0.7 475,532 + +0.7 475,534 - -0.2 475,537 + +0.4 475,555 + -0.1 475,555 - -1.2 475,579 - -0.2 475,580 - -0.0 475,600 - +0.0 475,630 + +0.2 475,675 + CCNA_03998 0.11 +0.7 475,676 - CCNA_03998 0.11 +0.3 475,707 - CCNA_03998 0.14 -0.3 475,774 + CCNA_03998 0.19 +1.0 475,803 - CCNA_03998 0.21 -1.1 475,832 + CCNA_03998 0.24 +1.3 475,861 + CCNA_03998 0.26 +0.6 475,878 - CCNA_03998 0.27 +0.1 475,885 - CCNA_03998 0.28 -1.9 475,900 + CCNA_03998 0.29 +0.0 475,906 + CCNA_03998 0.29 +0.4 475,919 + CCNA_03998 0.30 +0.5 475,921 - CCNA_03998 0.31 +1.0 475,927 - CCNA_03998 0.31 -0.4 475,927 - CCNA_03998 0.31 -0.7 475,927 - CCNA_03998 0.31 +0.9 475,927 - CCNA_03998 0.31 -0.3 475,934 - CCNA_03998 0.32 -0.7 475,957 + CCNA_03998 0.33 +0.2 475,965 - CCNA_03998 0.34 -1.0 476,034 - CCNA_03998 0.40 -0.3 476,115 + CCNA_03998 0.46 +0.4 476,117 - CCNA_03998 0.46 -0.3 476,142 + CCNA_03998 0.48 +0.3 476,168 + CCNA_03998 0.50 +1.3 476,183 + CCNA_03998 0.51 +0.4 476,193 - CCNA_03998 0.52 -2.0 476,203 - CCNA_03998 0.53 -0.1 476,209 - CCNA_03998 0.53 -0.3 476,212 + CCNA_03998 0.54 -0.5 476,222 + CCNA_03998 0.54 -0.1 476,234 + CCNA_03998 0.55 -0.0 476,250 - CCNA_03998 0.57 -0.7 476,257 + CCNA_03998 0.57 -0.1 476,272 - CCNA_03998 0.58 -0.5 476,298 + CCNA_03998 0.60 +0.2 476,306 - CCNA_03998 0.61 -1.8 476,319 - CCNA_03998 0.62 +0.5 476,344 + CCNA_03998 0.64 +0.9 476,357 + CCNA_03998 0.65 +0.4 476,357 + CCNA_03998 0.65 -0.0 476,357 + CCNA_03998 0.65 +1.2 476,365 - CCNA_03998 0.66 +0.3 476,365 - CCNA_03998 0.66 +0.2 476,378 + CCNA_03998 0.67 +0.8 476,378 + CCNA_03998 0.67 +0.5 476,380 + CCNA_03998 0.67 -0.2 476,388 - CCNA_03998 0.67 +0.0 476,415 + CCNA_03998 0.70 +0.0 476,423 - CCNA_03998 0.70 -0.5 476,430 + CCNA_03998 0.71 -0.5 476,480 - CCNA_03998 0.75 +0.5 476,492 - CCNA_03998 0.76 -0.3 476,536 + CCNA_03998 0.79 +0.3 476,552 + CCNA_03998 0.80 +0.3 476,562 + CCNA_03998 0.81 +0.1 476,567 + CCNA_03998 0.82 +0.4 476,570 - CCNA_03998 0.82 -0.0 476,580 - CCNA_03998 0.83 +1.2 476,590 + CCNA_03998 0.83 +1.5 476,603 + CCNA_03998 0.84 +0.3 476,608 + CCNA_03998 0.85 +1.1 476,609 + CCNA_03998 0.85 +0.9 476,666 + CCNA_03998 0.89 -0.1 476,674 - +0.0 476,676 + +0.5 476,707 + +0.3 476,732 + +0.6 476,735 - -1.6 476,740 - -0.8 476,748 + -0.1 476,748 + +0.8 476,748 + +1.5 476,756 - +0.3 476,756 - -1.1 476,758 + +0.2 476,807 - -0.3 476,808 + +1.1 476,816 - -0.7 476,816 - -0.6 476,816 - -0.2 476,816 - +0.3 476,834 + +0.2 476,866 + -0.5 476,872 + -0.7 476,872 + +0.1 476,880 - -1.0 476,888 + +1.1 476,910 + +0.4 476,918 - -1.3 477,212 + -0.5 477,212 + +0.2 477,219 + -1.0 477,220 + -0.1 477,246 + -1.0 477,258 - -0.2 477,264 - +0.0 477,289 + +0.2 477,297 - +0.1 477,304 + +0.2 477,304 + -1.0 477,304 + +0.2 477,304 + -1.3 477,304 + -0.3 477,304 + +0.0 477,304 + +0.4 477,304 + -1.0 477,312 - -0.8 477,312 - +0.5 477,312 - +0.9 477,312 - -0.2 477,330 - -0.3 477,370 - +0.5 477,382 + +0.1 477,388 - -1.0 477,390 - -2.1 477,458 + -0.1 477,469 + +0.6 477,474 + +0.1 477,477 - -1.7 477,487 - +0.6 477,488 - +0.0 477,495 + +0.6 477,503 - -0.5 477,504 + -0.3 477,514 - -0.7 477,550 + CCNA_00464 0.22 +0.8 477,551 + CCNA_00464 0.22 -0.0 477,556 + CCNA_00464 0.25 +0.9 477,558 - CCNA_00464 0.27 -0.3 477,558 - CCNA_00464 0.27 -1.8 477,558 - CCNA_00464 0.27 -0.2 477,558 - CCNA_00464 0.27 +0.0 477,564 - CCNA_00464 0.30 +0.7 477,574 - CCNA_00464 0.36 -0.1 477,576 + CCNA_00464 0.38 +0.0 477,584 - CCNA_00464 0.42 -0.5 477,584 - CCNA_00464 0.42 +1.0 477,619 + CCNA_00464 0.64 +0.4 477,632 - CCNA_00464 0.72 -1.2 477,673 - -1.1 477,684 + +0.0 477,684 + +0.1 477,692 - -0.1 477,729 + +0.1
Or see this region's nucleotide sequence