Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02742 and CCNA_03975 overlap by 4 nucleotides CCNA_03975 and CCNA_02743 overlap by 1 nucleotides
CCNA_02742: CCNA_02742 - hypothetical protein, at 2,902,466 to 2,903,737
_02742
CCNA_03975: CCNA_03975 - hypothetical protein, at 2,903,734 to 2,903,886
_03975
CCNA_02743: CCNA_02743 - TonB dependent receptor, at 2,903,886 to 2,906,294
_02743
Position (kb)
2903
2904 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2902.741 kb on + strand, within CCNA_02742 at 2902.791 kb on + strand, within CCNA_02742 at 2902.825 kb on + strand, within CCNA_02742 at 2902.835 kb on + strand, within CCNA_02742 at 2902.835 kb on + strand, within CCNA_02742 at 2902.868 kb on + strand, within CCNA_02742 at 2902.876 kb on - strand, within CCNA_02742 at 2902.877 kb on - strand, within CCNA_02742 at 2902.882 kb on + strand, within CCNA_02742 at 2902.984 kb on + strand, within CCNA_02742 at 2902.984 kb on - strand, within CCNA_02742 at 2903.270 kb on + strand, within CCNA_02742 at 2903.270 kb on + strand, within CCNA_02742 at 2903.278 kb on - strand, within CCNA_02742 at 2903.278 kb on - strand, within CCNA_02742 at 2903.320 kb on + strand, within CCNA_02742 at 2903.365 kb on + strand, within CCNA_02742 at 2903.459 kb on - strand, within CCNA_02742 at 2903.477 kb on + strand, within CCNA_02742 at 2903.522 kb on - strand, within CCNA_02742 at 2903.640 kb on + strand at 2903.660 kb on + strand at 2903.746 kb on + strand at 2903.799 kb on + strand, within CCNA_03975 at 2903.897 kb on + strand at 2903.903 kb on + strand at 2903.964 kb on - strand at 2903.975 kb on + strand at 2903.991 kb on - strand at 2904.015 kb on + strand at 2904.016 kb on + strand at 2904.016 kb on + strand at 2904.022 kb on - strand at 2904.046 kb on + strand at 2904.067 kb on + strand at 2904.067 kb on + strand at 2904.067 kb on + strand at 2904.075 kb on - strand at 2904.075 kb on - strand at 2904.081 kb on + strand at 2904.081 kb on + strand at 2904.081 kb on + strand at 2904.086 kb on + strand at 2904.131 kb on + strand, within CCNA_02743 at 2904.133 kb on - strand, within CCNA_02743 at 2904.135 kb on + strand, within CCNA_02743 at 2904.138 kb on - strand, within CCNA_02743 at 2904.143 kb on - strand, within CCNA_02743 at 2904.147 kb on + strand, within CCNA_02743 at 2904.147 kb on + strand, within CCNA_02743 at 2904.147 kb on + strand, within CCNA_02743 at 2904.147 kb on + strand, within CCNA_02743 at 2904.147 kb on + strand, within CCNA_02743 at 2904.147 kb on + strand, within CCNA_02743 at 2904.147 kb on + strand, within CCNA_02743 at 2904.147 kb on + strand, within CCNA_02743 at 2904.155 kb on - strand, within CCNA_02743 at 2904.155 kb on - strand, within CCNA_02743 at 2904.155 kb on - strand, within CCNA_02743 at 2904.155 kb on - strand, within CCNA_02743 at 2904.155 kb on - strand, within CCNA_02743 at 2904.155 kb on - strand, within CCNA_02743 at 2904.155 kb on - strand, within CCNA_02743 at 2904.155 kb on - strand, within CCNA_02743 at 2904.162 kb on + strand, within CCNA_02743 at 2904.162 kb on + strand, within CCNA_02743 at 2904.162 kb on + strand, within CCNA_02743 at 2904.170 kb on - strand, within CCNA_02743 at 2904.170 kb on - strand, within CCNA_02743 at 2904.188 kb on - strand, within CCNA_02743 at 2904.188 kb on - strand, within CCNA_02743 at 2904.190 kb on + strand, within CCNA_02743 at 2904.247 kb on + strand, within CCNA_02743 at 2904.254 kb on - strand, within CCNA_02743 at 2904.254 kb on - strand, within CCNA_02743 at 2904.265 kb on - strand, within CCNA_02743 at 2904.268 kb on + strand, within CCNA_02743 at 2904.268 kb on + strand, within CCNA_02743 at 2904.268 kb on + strand, within CCNA_02743 at 2904.276 kb on - strand, within CCNA_02743 at 2904.276 kb on - strand, within CCNA_02743 at 2904.276 kb on - strand, within CCNA_02743 at 2904.276 kb on - strand, within CCNA_02743 at 2904.276 kb on - strand, within CCNA_02743 at 2904.276 kb on - strand, within CCNA_02743 at 2904.276 kb on - strand, within CCNA_02743 at 2904.276 kb on - strand, within CCNA_02743 at 2904.281 kb on - strand, within CCNA_02743 at 2904.298 kb on + strand, within CCNA_02743 at 2904.305 kb on - strand, within CCNA_02743 at 2904.305 kb on - strand, within CCNA_02743 at 2904.311 kb on - strand, within CCNA_02743 at 2904.312 kb on + strand, within CCNA_02743 at 2904.369 kb on + strand, within CCNA_02743 at 2904.369 kb on + strand, within CCNA_02743 at 2904.369 kb on + strand, within CCNA_02743 at 2904.370 kb on + strand, within CCNA_02743 at 2904.370 kb on + strand, within CCNA_02743 at 2904.377 kb on - strand, within CCNA_02743 at 2904.412 kb on - strand, within CCNA_02743 at 2904.418 kb on + strand, within CCNA_02743 at 2904.418 kb on + strand, within CCNA_02743 at 2904.418 kb on + strand, within CCNA_02743 at 2904.418 kb on + strand, within CCNA_02743 at 2904.418 kb on + strand, within CCNA_02743 at 2904.426 kb on - strand, within CCNA_02743 at 2904.426 kb on - strand, within CCNA_02743 at 2904.426 kb on - strand, within CCNA_02743 at 2904.426 kb on - strand, within CCNA_02743 at 2904.426 kb on - strand, within CCNA_02743 at 2904.426 kb on - strand, within CCNA_02743 at 2904.426 kb on - strand, within CCNA_02743 at 2904.427 kb on + strand, within CCNA_02743 at 2904.432 kb on + strand, within CCNA_02743 at 2904.444 kb on + strand, within CCNA_02743 at 2904.504 kb on + strand, within CCNA_02743 at 2904.504 kb on + strand, within CCNA_02743 at 2904.504 kb on + strand, within CCNA_02743 at 2904.511 kb on + strand, within CCNA_02743 at 2904.523 kb on + strand, within CCNA_02743 at 2904.532 kb on - strand, within CCNA_02743 at 2904.548 kb on - strand, within CCNA_02743 at 2904.556 kb on + strand, within CCNA_02743 at 2904.559 kb on - strand, within CCNA_02743 at 2904.561 kb on + strand, within CCNA_02743 at 2904.566 kb on + strand, within CCNA_02743 at 2904.566 kb on + strand, within CCNA_02743 at 2904.566 kb on + strand, within CCNA_02743 at 2904.574 kb on - strand, within CCNA_02743 at 2904.574 kb on - strand, within CCNA_02743 at 2904.574 kb on - strand, within CCNA_02743 at 2904.583 kb on + strand, within CCNA_02743 at 2904.587 kb on + strand, within CCNA_02743 at 2904.611 kb on + strand, within CCNA_02743 at 2904.614 kb on - strand, within CCNA_02743 at 2904.630 kb on + strand, within CCNA_02743 at 2904.649 kb on - strand, within CCNA_02743 at 2904.653 kb on + strand, within CCNA_02743 at 2904.653 kb on - strand, within CCNA_02743 at 2904.708 kb on - strand, within CCNA_02743 at 2904.726 kb on + strand, within CCNA_02743 at 2904.734 kb on - strand, within CCNA_02743 at 2904.736 kb on + strand, within CCNA_02743 at 2904.762 kb on + strand, within CCNA_02743 at 2904.782 kb on - strand, within CCNA_02743 at 2904.782 kb on - strand, within CCNA_02743 at 2904.782 kb on - strand, within CCNA_02743 at 2904.797 kb on + strand, within CCNA_02743 at 2904.797 kb on + strand, within CCNA_02743 at 2904.805 kb on - strand, within CCNA_02743 at 2904.859 kb on - strand, within CCNA_02743
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,902,741 + CCNA_02742 0.22 -0.4 2,902,791 + CCNA_02742 0.26 -0.5 2,902,825 + CCNA_02742 0.28 -0.2 2,902,835 + CCNA_02742 0.29 +0.6 2,902,835 + CCNA_02742 0.29 -0.9 2,902,868 + CCNA_02742 0.32 -0.3 2,902,876 - CCNA_02742 0.32 -0.6 2,902,877 - CCNA_02742 0.32 +0.6 2,902,882 + CCNA_02742 0.33 -0.2 2,902,984 + CCNA_02742 0.41 -0.6 2,902,984 - CCNA_02742 0.41 -0.3 2,903,270 + CCNA_02742 0.63 -0.1 2,903,270 + CCNA_02742 0.63 -1.3 2,903,278 - CCNA_02742 0.64 -0.0 2,903,278 - CCNA_02742 0.64 -0.2 2,903,320 + CCNA_02742 0.67 -1.2 2,903,365 + CCNA_02742 0.71 -0.5 2,903,459 - CCNA_02742 0.78 +0.3 2,903,477 + CCNA_02742 0.79 -0.9 2,903,522 - CCNA_02742 0.83 -0.4 2,903,640 + +0.7 2,903,660 + +0.9 2,903,746 + +1.2 2,903,799 + CCNA_03975 0.42 -0.7 2,903,897 + -0.3 2,903,903 + -1.9 2,903,964 - +0.1 2,903,975 + -0.2 2,903,991 - +0.5 2,904,015 + +1.4 2,904,016 + -0.9 2,904,016 + -2.0 2,904,022 - -1.0 2,904,046 + +0.8 2,904,067 + +0.8 2,904,067 + -0.4 2,904,067 + -0.5 2,904,075 - -1.8 2,904,075 - +0.6 2,904,081 + +0.1 2,904,081 + -0.4 2,904,081 + -0.2 2,904,086 + -0.5 2,904,131 + CCNA_02743 0.10 -0.5 2,904,133 - CCNA_02743 0.10 -0.5 2,904,135 + CCNA_02743 0.10 -0.3 2,904,138 - CCNA_02743 0.10 -1.4 2,904,143 - CCNA_02743 0.11 +0.8 2,904,147 + CCNA_02743 0.11 +0.8 2,904,147 + CCNA_02743 0.11 +0.0 2,904,147 + CCNA_02743 0.11 -0.1 2,904,147 + CCNA_02743 0.11 -0.2 2,904,147 + CCNA_02743 0.11 +1.5 2,904,147 + CCNA_02743 0.11 +0.1 2,904,147 + CCNA_02743 0.11 -0.2 2,904,147 + CCNA_02743 0.11 -2.0 2,904,155 - CCNA_02743 0.11 +0.0 2,904,155 - CCNA_02743 0.11 -0.2 2,904,155 - CCNA_02743 0.11 -0.1 2,904,155 - CCNA_02743 0.11 -1.2 2,904,155 - CCNA_02743 0.11 +1.5 2,904,155 - CCNA_02743 0.11 +1.2 2,904,155 - CCNA_02743 0.11 +0.1 2,904,155 - CCNA_02743 0.11 -0.3 2,904,162 + CCNA_02743 0.11 -0.3 2,904,162 + CCNA_02743 0.11 +0.7 2,904,162 + CCNA_02743 0.11 -1.0 2,904,170 - CCNA_02743 0.12 +0.2 2,904,170 - CCNA_02743 0.12 +0.4 2,904,188 - CCNA_02743 0.13 +0.1 2,904,188 - CCNA_02743 0.13 +0.3 2,904,190 + CCNA_02743 0.13 -1.4 2,904,247 + CCNA_02743 0.15 -0.8 2,904,254 - CCNA_02743 0.15 -0.6 2,904,254 - CCNA_02743 0.15 -0.2 2,904,265 - CCNA_02743 0.16 +0.8 2,904,268 + CCNA_02743 0.16 +0.1 2,904,268 + CCNA_02743 0.16 +0.4 2,904,268 + CCNA_02743 0.16 +0.1 2,904,276 - CCNA_02743 0.16 -1.1 2,904,276 - CCNA_02743 0.16 -0.1 2,904,276 - CCNA_02743 0.16 -1.6 2,904,276 - CCNA_02743 0.16 +0.4 2,904,276 - CCNA_02743 0.16 -0.3 2,904,276 - CCNA_02743 0.16 +0.3 2,904,276 - CCNA_02743 0.16 +0.5 2,904,276 - CCNA_02743 0.16 -0.4 2,904,281 - CCNA_02743 0.16 +0.5 2,904,298 + CCNA_02743 0.17 -1.1 2,904,305 - CCNA_02743 0.17 +0.2 2,904,305 - CCNA_02743 0.17 -1.9 2,904,311 - CCNA_02743 0.18 +1.1 2,904,312 + CCNA_02743 0.18 +0.6 2,904,369 + CCNA_02743 0.20 +2.1 2,904,369 + CCNA_02743 0.20 +0.1 2,904,369 + CCNA_02743 0.20 -0.3 2,904,370 + CCNA_02743 0.20 -0.6 2,904,370 + CCNA_02743 0.20 +0.6 2,904,377 - CCNA_02743 0.20 +0.0 2,904,412 - CCNA_02743 0.22 -0.5 2,904,418 + CCNA_02743 0.22 +0.5 2,904,418 + CCNA_02743 0.22 +0.4 2,904,418 + CCNA_02743 0.22 +0.6 2,904,418 + CCNA_02743 0.22 -0.3 2,904,418 + CCNA_02743 0.22 -0.4 2,904,426 - CCNA_02743 0.22 -0.4 2,904,426 - CCNA_02743 0.22 +0.1 2,904,426 - CCNA_02743 0.22 +0.2 2,904,426 - CCNA_02743 0.22 +0.3 2,904,426 - CCNA_02743 0.22 +0.4 2,904,426 - CCNA_02743 0.22 -0.2 2,904,426 - CCNA_02743 0.22 -0.1 2,904,427 + CCNA_02743 0.22 +0.2 2,904,432 + CCNA_02743 0.23 +0.0 2,904,444 + CCNA_02743 0.23 -0.6 2,904,504 + CCNA_02743 0.26 +0.4 2,904,504 + CCNA_02743 0.26 +0.0 2,904,504 + CCNA_02743 0.26 +0.3 2,904,511 + CCNA_02743 0.26 -1.2 2,904,523 + CCNA_02743 0.26 +0.2 2,904,532 - CCNA_02743 0.27 -1.6 2,904,548 - CCNA_02743 0.27 +1.4 2,904,556 + CCNA_02743 0.28 +0.1 2,904,559 - CCNA_02743 0.28 -1.7 2,904,561 + CCNA_02743 0.28 -0.2 2,904,566 + CCNA_02743 0.28 +0.5 2,904,566 + CCNA_02743 0.28 +0.4 2,904,566 + CCNA_02743 0.28 +0.2 2,904,574 - CCNA_02743 0.29 +0.4 2,904,574 - CCNA_02743 0.29 -0.4 2,904,574 - CCNA_02743 0.29 -0.3 2,904,583 + CCNA_02743 0.29 -0.6 2,904,587 + CCNA_02743 0.29 -0.1 2,904,611 + CCNA_02743 0.30 +0.4 2,904,614 - CCNA_02743 0.30 -0.2 2,904,630 + CCNA_02743 0.31 -1.0 2,904,649 - CCNA_02743 0.32 +0.6 2,904,653 + CCNA_02743 0.32 +1.0 2,904,653 - CCNA_02743 0.32 +0.1 2,904,708 - CCNA_02743 0.34 +0.8 2,904,726 + CCNA_02743 0.35 +0.3 2,904,734 - CCNA_02743 0.35 +0.4 2,904,736 + CCNA_02743 0.35 +0.0 2,904,762 + CCNA_02743 0.36 +0.3 2,904,782 - CCNA_02743 0.37 -0.8 2,904,782 - CCNA_02743 0.37 -0.3 2,904,782 - CCNA_02743 0.37 +0.5 2,904,797 + CCNA_02743 0.38 -0.3 2,904,797 + CCNA_02743 0.38 +0.4 2,904,805 - CCNA_02743 0.38 +0.4 2,904,859 - CCNA_02743 0.40 -1.3
Or see this region's nucleotide sequence