Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02581 and CCNA_02582 overlap by 14 nucleotides CCNA_02582 and CCNA_02583 are separated by 66 nucleotides CCNA_02583 and CCNA_03970 are separated by 105 nucleotides CCNA_03970 and CCNA_03901 are separated by 355 nucleotides CCNA_03901 and CCNA_02586 are separated by 66 nucleotides
CCNA_02581: CCNA_02581 - hypothetical protein, at 2,731,704 to 2,732,189
_02581
CCNA_02582: CCNA_02582 - hypothetical protein, at 2,732,176 to 2,732,322
_02582
CCNA_02583: CCNA_02583 - phosphoribosylformylglycinamidine synthase I, at 2,732,389 to 2,733,051
_02583
CCNA_03970: CCNA_03970 - hypothetical protein, at 2,733,157 to 2,733,348
_03970
CCNA_03901: CCNA_03901 - hypothetical protein, at 2,733,704 to 2,734,027
_03901
CCNA_02586: CCNA_02586 - phosphoribosylformylglycinamidine synthase II, at 2,734,094 to 2,736,313
_02586
Position (kb)
2733
2734 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2732.182 kb on - strand at 2732.216 kb on + strand, within CCNA_02582 at 2732.253 kb on + strand, within CCNA_02582 at 2732.254 kb on - strand, within CCNA_02582 at 2732.274 kb on - strand, within CCNA_02582 at 2732.276 kb on - strand, within CCNA_02582 at 2732.276 kb on - strand, within CCNA_02582 at 2732.293 kb on + strand, within CCNA_02582 at 2732.356 kb on - strand at 2732.371 kb on + strand at 2732.379 kb on - strand at 2732.459 kb on + strand, within CCNA_02583 at 2732.467 kb on - strand, within CCNA_02583 at 2732.467 kb on - strand, within CCNA_02583 at 2732.467 kb on - strand, within CCNA_02583 at 2732.467 kb on - strand, within CCNA_02583 at 2732.558 kb on + strand, within CCNA_02583 at 2732.570 kb on - strand, within CCNA_02583 at 2732.675 kb on - strand, within CCNA_02583 at 2732.703 kb on - strand, within CCNA_02583 at 2732.712 kb on + strand, within CCNA_02583 at 2732.773 kb on - strand, within CCNA_02583 at 2732.790 kb on + strand, within CCNA_02583 at 2732.808 kb on - strand, within CCNA_02583 at 2732.813 kb on + strand, within CCNA_02583 at 2732.817 kb on + strand, within CCNA_02583 at 2732.823 kb on + strand, within CCNA_02583 at 2732.832 kb on - strand, within CCNA_02583 at 2732.867 kb on - strand, within CCNA_02583 at 2732.880 kb on - strand, within CCNA_02583 at 2732.881 kb on + strand, within CCNA_02583 at 2732.889 kb on - strand, within CCNA_02583 at 2732.914 kb on + strand, within CCNA_02583 at 2732.967 kb on + strand, within CCNA_02583 at 2732.975 kb on - strand, within CCNA_02583 at 2733.003 kb on - strand at 2733.003 kb on - strand at 2733.014 kb on + strand at 2733.019 kb on + strand at 2733.019 kb on + strand at 2733.027 kb on - strand at 2733.027 kb on - strand at 2733.027 kb on - strand at 2733.027 kb on - strand at 2733.052 kb on - strand at 2733.080 kb on + strand at 2733.099 kb on + strand at 2733.107 kb on - strand at 2733.177 kb on - strand, within CCNA_03970 at 2733.217 kb on + strand, within CCNA_03970 at 2733.239 kb on + strand, within CCNA_03970 at 2733.301 kb on + strand, within CCNA_03970 at 2733.329 kb on + strand at 2733.379 kb on + strand at 2733.396 kb on - strand at 2733.400 kb on - strand at 2733.528 kb on + strand at 2733.592 kb on + strand at 2733.592 kb on + strand at 2733.600 kb on - strand at 2733.637 kb on - strand at 2733.675 kb on - strand at 2733.691 kb on + strand at 2733.699 kb on - strand at 2733.804 kb on + strand, within CCNA_03901 at 2733.826 kb on + strand, within CCNA_03901 at 2733.826 kb on + strand, within CCNA_03901 at 2733.834 kb on - strand, within CCNA_03901 at 2733.834 kb on - strand, within CCNA_03901 at 2733.834 kb on - strand, within CCNA_03901 at 2733.844 kb on - strand, within CCNA_03901 at 2733.869 kb on + strand, within CCNA_03901 at 2733.877 kb on - strand, within CCNA_03901 at 2733.933 kb on + strand, within CCNA_03901 at 2733.944 kb on - strand, within CCNA_03901 at 2733.958 kb on + strand, within CCNA_03901 at 2733.972 kb on - strand, within CCNA_03901 at 2733.972 kb on - strand, within CCNA_03901 at 2734.049 kb on - strand at 2734.066 kb on - strand at 2734.091 kb on + strand at 2734.099 kb on - strand at 2734.104 kb on + strand at 2734.104 kb on + strand at 2734.112 kb on - strand at 2734.112 kb on - strand at 2734.123 kb on + strand at 2734.131 kb on - strand at 2734.152 kb on + strand at 2734.186 kb on - strand at 2734.186 kb on - strand at 2734.186 kb on - strand at 2734.195 kb on + strand at 2734.234 kb on + strand at 2734.259 kb on - strand at 2734.330 kb on + strand, within CCNA_02586
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,732,182 - +1.1 2,732,216 + CCNA_02582 0.27 +1.0 2,732,253 + CCNA_02582 0.52 +1.1 2,732,254 - CCNA_02582 0.53 -0.1 2,732,274 - CCNA_02582 0.67 +0.4 2,732,276 - CCNA_02582 0.68 +0.2 2,732,276 - CCNA_02582 0.68 -0.5 2,732,293 + CCNA_02582 0.80 +0.1 2,732,356 - +0.3 2,732,371 + +0.4 2,732,379 - +1.1 2,732,459 + CCNA_02583 0.11 -0.2 2,732,467 - CCNA_02583 0.12 +0.1 2,732,467 - CCNA_02583 0.12 -3.4 2,732,467 - CCNA_02583 0.12 -0.1 2,732,467 - CCNA_02583 0.12 +0.1 2,732,558 + CCNA_02583 0.25 +0.3 2,732,570 - CCNA_02583 0.27 -0.8 2,732,675 - CCNA_02583 0.43 -1.7 2,732,703 - CCNA_02583 0.47 +0.1 2,732,712 + CCNA_02583 0.49 +2.2 2,732,773 - CCNA_02583 0.58 +0.7 2,732,790 + CCNA_02583 0.60 -0.3 2,732,808 - CCNA_02583 0.63 -0.2 2,732,813 + CCNA_02583 0.64 -0.5 2,732,817 + CCNA_02583 0.65 +0.4 2,732,823 + CCNA_02583 0.65 -0.7 2,732,832 - CCNA_02583 0.67 -1.5 2,732,867 - CCNA_02583 0.72 +0.4 2,732,880 - CCNA_02583 0.74 +0.6 2,732,881 + CCNA_02583 0.74 +0.2 2,732,889 - CCNA_02583 0.75 -0.4 2,732,914 + CCNA_02583 0.79 -0.2 2,732,967 + CCNA_02583 0.87 -0.5 2,732,975 - CCNA_02583 0.88 -2.2 2,733,003 - -0.7 2,733,003 - -0.1 2,733,014 + -0.1 2,733,019 + -0.5 2,733,019 + -0.4 2,733,027 - -1.8 2,733,027 - -1.1 2,733,027 - -0.6 2,733,027 - -0.8 2,733,052 - -0.7 2,733,080 + +0.7 2,733,099 + +0.4 2,733,107 - -0.4 2,733,177 - CCNA_03970 0.10 -0.3 2,733,217 + CCNA_03970 0.31 +0.5 2,733,239 + CCNA_03970 0.43 -1.2 2,733,301 + CCNA_03970 0.75 -0.1 2,733,329 + +0.9 2,733,379 + +0.3 2,733,396 - +1.4 2,733,400 - -1.3 2,733,528 + +0.4 2,733,592 + -0.8 2,733,592 + +0.0 2,733,600 - -0.6 2,733,637 - -0.5 2,733,675 - +0.6 2,733,691 + +0.3 2,733,699 - -0.3 2,733,804 + CCNA_03901 0.31 -0.2 2,733,826 + CCNA_03901 0.38 -2.4 2,733,826 + CCNA_03901 0.38 +0.2 2,733,834 - CCNA_03901 0.40 +0.0 2,733,834 - CCNA_03901 0.40 -0.5 2,733,834 - CCNA_03901 0.40 -0.1 2,733,844 - CCNA_03901 0.43 +1.4 2,733,869 + CCNA_03901 0.51 +1.5 2,733,877 - CCNA_03901 0.53 -1.4 2,733,933 + CCNA_03901 0.71 +0.3 2,733,944 - CCNA_03901 0.74 +0.4 2,733,958 + CCNA_03901 0.78 -0.3 2,733,972 - CCNA_03901 0.83 +1.2 2,733,972 - CCNA_03901 0.83 +0.2 2,734,049 - -0.4 2,734,066 - +0.7 2,734,091 + -0.4 2,734,099 - -0.3 2,734,104 + -0.5 2,734,104 + -0.3 2,734,112 - -1.4 2,734,112 - +0.5 2,734,123 + -0.0 2,734,131 - -1.1 2,734,152 + -0.1 2,734,186 - -1.0 2,734,186 - +0.7 2,734,186 - -2.0 2,734,195 + -0.4 2,734,234 + -0.3 2,734,259 - +0.5 2,734,330 + CCNA_02586 0.11 -0.1
Or see this region's nucleotide sequence