Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03970

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02581 and CCNA_02582 overlap by 14 nucleotidesCCNA_02582 and CCNA_02583 are separated by 66 nucleotidesCCNA_02583 and CCNA_03970 are separated by 105 nucleotidesCCNA_03970 and CCNA_03901 are separated by 355 nucleotidesCCNA_03901 and CCNA_02586 are separated by 66 nucleotides CCNA_02581: CCNA_02581 - hypothetical protein, at 2,731,704 to 2,732,189 _02581 CCNA_02582: CCNA_02582 - hypothetical protein, at 2,732,176 to 2,732,322 _02582 CCNA_02583: CCNA_02583 - phosphoribosylformylglycinamidine synthase I, at 2,732,389 to 2,733,051 _02583 CCNA_03970: CCNA_03970 - hypothetical protein, at 2,733,157 to 2,733,348 _03970 CCNA_03901: CCNA_03901 - hypothetical protein, at 2,733,704 to 2,734,027 _03901 CCNA_02586: CCNA_02586 - phosphoribosylformylglycinamidine synthase II, at 2,734,094 to 2,736,313 _02586 Position (kb) 2733 2734Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2732.182 kb on - strandat 2732.216 kb on + strand, within CCNA_02582at 2732.253 kb on + strand, within CCNA_02582at 2732.254 kb on - strand, within CCNA_02582at 2732.274 kb on - strand, within CCNA_02582at 2732.276 kb on - strand, within CCNA_02582at 2732.276 kb on - strand, within CCNA_02582at 2732.293 kb on + strand, within CCNA_02582at 2732.356 kb on - strandat 2732.371 kb on + strandat 2732.379 kb on - strandat 2732.459 kb on + strand, within CCNA_02583at 2732.467 kb on - strand, within CCNA_02583at 2732.467 kb on - strand, within CCNA_02583at 2732.467 kb on - strand, within CCNA_02583at 2732.467 kb on - strand, within CCNA_02583at 2732.558 kb on + strand, within CCNA_02583at 2732.570 kb on - strand, within CCNA_02583at 2732.675 kb on - strand, within CCNA_02583at 2732.703 kb on - strand, within CCNA_02583at 2732.712 kb on + strand, within CCNA_02583at 2732.773 kb on - strand, within CCNA_02583at 2732.790 kb on + strand, within CCNA_02583at 2732.808 kb on - strand, within CCNA_02583at 2732.813 kb on + strand, within CCNA_02583at 2732.817 kb on + strand, within CCNA_02583at 2732.823 kb on + strand, within CCNA_02583at 2732.832 kb on - strand, within CCNA_02583at 2732.867 kb on - strand, within CCNA_02583at 2732.880 kb on - strand, within CCNA_02583at 2732.881 kb on + strand, within CCNA_02583at 2732.889 kb on - strand, within CCNA_02583at 2732.914 kb on + strand, within CCNA_02583at 2732.967 kb on + strand, within CCNA_02583at 2732.975 kb on - strand, within CCNA_02583at 2733.003 kb on - strandat 2733.003 kb on - strandat 2733.014 kb on + strandat 2733.019 kb on + strandat 2733.019 kb on + strandat 2733.027 kb on - strandat 2733.027 kb on - strandat 2733.027 kb on - strandat 2733.027 kb on - strandat 2733.052 kb on - strandat 2733.080 kb on + strandat 2733.099 kb on + strandat 2733.107 kb on - strandat 2733.177 kb on - strand, within CCNA_03970at 2733.217 kb on + strand, within CCNA_03970at 2733.239 kb on + strand, within CCNA_03970at 2733.301 kb on + strand, within CCNA_03970at 2733.329 kb on + strandat 2733.379 kb on + strandat 2733.396 kb on - strandat 2733.400 kb on - strandat 2733.528 kb on + strandat 2733.592 kb on + strandat 2733.592 kb on + strandat 2733.600 kb on - strandat 2733.637 kb on - strandat 2733.675 kb on - strandat 2733.691 kb on + strandat 2733.699 kb on - strandat 2733.804 kb on + strand, within CCNA_03901at 2733.826 kb on + strand, within CCNA_03901at 2733.826 kb on + strand, within CCNA_03901at 2733.834 kb on - strand, within CCNA_03901at 2733.834 kb on - strand, within CCNA_03901at 2733.834 kb on - strand, within CCNA_03901at 2733.844 kb on - strand, within CCNA_03901at 2733.869 kb on + strand, within CCNA_03901at 2733.877 kb on - strand, within CCNA_03901at 2733.933 kb on + strand, within CCNA_03901at 2733.944 kb on - strand, within CCNA_03901at 2733.958 kb on + strand, within CCNA_03901at 2733.972 kb on - strand, within CCNA_03901at 2733.972 kb on - strand, within CCNA_03901at 2734.049 kb on - strandat 2734.066 kb on - strandat 2734.091 kb on + strandat 2734.099 kb on - strandat 2734.104 kb on + strandat 2734.104 kb on + strandat 2734.112 kb on - strandat 2734.112 kb on - strandat 2734.123 kb on + strandat 2734.131 kb on - strandat 2734.152 kb on + strandat 2734.186 kb on - strandat 2734.186 kb on - strandat 2734.186 kb on - strandat 2734.195 kb on + strandat 2734.234 kb on + strandat 2734.259 kb on - strandat 2734.330 kb on + strand, within CCNA_02586

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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2,732,182 - +1.1
2,732,216 + CCNA_02582 0.27 +1.0
2,732,253 + CCNA_02582 0.52 +1.1
2,732,254 - CCNA_02582 0.53 -0.1
2,732,274 - CCNA_02582 0.67 +0.4
2,732,276 - CCNA_02582 0.68 +0.2
2,732,276 - CCNA_02582 0.68 -0.5
2,732,293 + CCNA_02582 0.80 +0.1
2,732,356 - +0.3
2,732,371 + +0.4
2,732,379 - +1.1
2,732,459 + CCNA_02583 0.11 -0.2
2,732,467 - CCNA_02583 0.12 +0.1
2,732,467 - CCNA_02583 0.12 -3.4
2,732,467 - CCNA_02583 0.12 -0.1
2,732,467 - CCNA_02583 0.12 +0.1
2,732,558 + CCNA_02583 0.25 +0.3
2,732,570 - CCNA_02583 0.27 -0.8
2,732,675 - CCNA_02583 0.43 -1.7
2,732,703 - CCNA_02583 0.47 +0.1
2,732,712 + CCNA_02583 0.49 +2.2
2,732,773 - CCNA_02583 0.58 +0.7
2,732,790 + CCNA_02583 0.60 -0.3
2,732,808 - CCNA_02583 0.63 -0.2
2,732,813 + CCNA_02583 0.64 -0.5
2,732,817 + CCNA_02583 0.65 +0.4
2,732,823 + CCNA_02583 0.65 -0.7
2,732,832 - CCNA_02583 0.67 -1.5
2,732,867 - CCNA_02583 0.72 +0.4
2,732,880 - CCNA_02583 0.74 +0.6
2,732,881 + CCNA_02583 0.74 +0.2
2,732,889 - CCNA_02583 0.75 -0.4
2,732,914 + CCNA_02583 0.79 -0.2
2,732,967 + CCNA_02583 0.87 -0.5
2,732,975 - CCNA_02583 0.88 -2.2
2,733,003 - -0.7
2,733,003 - -0.1
2,733,014 + -0.1
2,733,019 + -0.5
2,733,019 + -0.4
2,733,027 - -1.8
2,733,027 - -1.1
2,733,027 - -0.6
2,733,027 - -0.8
2,733,052 - -0.7
2,733,080 + +0.7
2,733,099 + +0.4
2,733,107 - -0.4
2,733,177 - CCNA_03970 0.10 -0.3
2,733,217 + CCNA_03970 0.31 +0.5
2,733,239 + CCNA_03970 0.43 -1.2
2,733,301 + CCNA_03970 0.75 -0.1
2,733,329 + +0.9
2,733,379 + +0.3
2,733,396 - +1.4
2,733,400 - -1.3
2,733,528 + +0.4
2,733,592 + -0.8
2,733,592 + +0.0
2,733,600 - -0.6
2,733,637 - -0.5
2,733,675 - +0.6
2,733,691 + +0.3
2,733,699 - -0.3
2,733,804 + CCNA_03901 0.31 -0.2
2,733,826 + CCNA_03901 0.38 -2.4
2,733,826 + CCNA_03901 0.38 +0.2
2,733,834 - CCNA_03901 0.40 +0.0
2,733,834 - CCNA_03901 0.40 -0.5
2,733,834 - CCNA_03901 0.40 -0.1
2,733,844 - CCNA_03901 0.43 +1.4
2,733,869 + CCNA_03901 0.51 +1.5
2,733,877 - CCNA_03901 0.53 -1.4
2,733,933 + CCNA_03901 0.71 +0.3
2,733,944 - CCNA_03901 0.74 +0.4
2,733,958 + CCNA_03901 0.78 -0.3
2,733,972 - CCNA_03901 0.83 +1.2
2,733,972 - CCNA_03901 0.83 +0.2
2,734,049 - -0.4
2,734,066 - +0.7
2,734,091 + -0.4
2,734,099 - -0.3
2,734,104 + -0.5
2,734,104 + -0.3
2,734,112 - -1.4
2,734,112 - +0.5
2,734,123 + -0.0
2,734,131 - -1.1
2,734,152 + -0.1
2,734,186 - -1.0
2,734,186 - +0.7
2,734,186 - -2.0
2,734,195 + -0.4
2,734,234 + -0.3
2,734,259 - +0.5
2,734,330 + CCNA_02586 0.11 -0.1

Or see this region's nucleotide sequence