Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00718 and CCNA_03930 are separated by 6 nucleotides CCNA_03930 and CCNA_03931 are separated by 542 nucleotides CCNA_03931 and CCNA_03932 are separated by 2 nucleotides CCNA_03932 and CCNA_03933 are separated by 30 nucleotides CCNA_03933 and CCNA_00719 are separated by 115 nucleotides
CCNA_00718: CCNA_00718 - abortive infection protein, at 771,887 to 772,783
_00718
CCNA_03930: CCNA_03930 - hypothetical protein, at 772,790 to 772,894
_03930
CCNA_03931: CCNA_03931 - hypothetical protein, at 773,437 to 773,730
_03931
CCNA_03932: CCNA_03932 - hypothetical protein, at 773,733 to 773,987
_03932
CCNA_03933: CCNA_03933 - hypothetical protein, at 774,018 to 774,278
_03933
CCNA_00719: CCNA_00719 - type I secretion adaptor protein hlyD, at 774,394 to 775,635
_00719
Position (kb) 773
774 Strain fitness (log2 ratio) -2
-1
0
1
2 at 772.455 kb on - strand, within CCNA_00718 at 772.455 kb on - strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.488 kb on - strand, within CCNA_00718 at 772.523 kb on - strand, within CCNA_00718 at 772.582 kb on - strand, within CCNA_00718 at 772.596 kb on + strand, within CCNA_00718 at 772.698 kb on - strand at 772.698 kb on - strand at 772.724 kb on + strand at 772.745 kb on - strand at 772.756 kb on - strand at 772.787 kb on + strand at 772.787 kb on + strand at 772.802 kb on + strand, within CCNA_03930 at 772.803 kb on - strand, within CCNA_03930 at 772.805 kb on - strand, within CCNA_03930 at 772.820 kb on + strand, within CCNA_03930 at 772.828 kb on - strand, within CCNA_03930 at 772.847 kb on + strand, within CCNA_03930 at 772.852 kb on + strand, within CCNA_03930 at 772.860 kb on - strand, within CCNA_03930 at 772.866 kb on + strand, within CCNA_03930 at 772.869 kb on - strand, within CCNA_03930 at 772.897 kb on - strand at 772.945 kb on + strand at 772.968 kb on + strand at 772.975 kb on + strand at 772.985 kb on + strand at 772.986 kb on + strand at 772.991 kb on + strand at 773.027 kb on + strand at 773.030 kb on - strand at 773.060 kb on - strand at 773.080 kb on + strand at 773.094 kb on + strand at 773.101 kb on - strand at 773.102 kb on - strand at 773.120 kb on + strand at 773.151 kb on + strand at 773.151 kb on - strand at 773.161 kb on + strand at 773.161 kb on + strand at 773.169 kb on - strand at 773.179 kb on - strand at 773.184 kb on - strand at 773.184 kb on - strand at 773.189 kb on - strand at 773.194 kb on + strand at 773.194 kb on + strand at 773.213 kb on + strand at 773.218 kb on + strand at 773.221 kb on - strand at 773.221 kb on - strand at 773.248 kb on + strand at 773.248 kb on + strand at 773.249 kb on + strand at 773.249 kb on + strand at 773.249 kb on + strand at 773.256 kb on - strand at 773.256 kb on - strand at 773.256 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.271 kb on + strand at 773.278 kb on - strand at 773.334 kb on - strand at 773.367 kb on + strand at 773.373 kb on + strand at 773.640 kb on + strand, within CCNA_03931 at 773.732 kb on + strand at 773.732 kb on + strand at 773.732 kb on + strand at 773.742 kb on + strand at 773.750 kb on - strand at 773.757 kb on - strand at 773.757 kb on - strand at 773.778 kb on + strand, within CCNA_03932 at 773.821 kb on - strand, within CCNA_03932 at 773.823 kb on + strand, within CCNA_03932 at 773.829 kb on + strand, within CCNA_03932 at 773.837 kb on - strand, within CCNA_03932 at 773.865 kb on - strand, within CCNA_03932 at 773.890 kb on - strand, within CCNA_03932 at 773.909 kb on - strand, within CCNA_03932 at 773.909 kb on - strand, within CCNA_03932 at 773.924 kb on + strand, within CCNA_03932 at 773.936 kb on + strand, within CCNA_03932 at 773.944 kb on - strand, within CCNA_03932 at 773.954 kb on - strand, within CCNA_03932 at 773.964 kb on - strand at 774.038 kb on - strand at 774.038 kb on - strand at 774.060 kb on + strand, within CCNA_03933 at 774.065 kb on - strand, within CCNA_03933 at 774.065 kb on - strand, within CCNA_03933 at 774.090 kb on - strand, within CCNA_03933 at 774.109 kb on - strand, within CCNA_03933 at 774.115 kb on - strand, within CCNA_03933 at 774.119 kb on + strand, within CCNA_03933 at 774.123 kb on - strand, within CCNA_03933 at 774.181 kb on + strand, within CCNA_03933 at 774.188 kb on + strand, within CCNA_03933 at 774.192 kb on + strand, within CCNA_03933 at 774.200 kb on - strand, within CCNA_03933 at 774.204 kb on + strand, within CCNA_03933 at 774.209 kb on + strand, within CCNA_03933 at 774.280 kb on + strand at 774.285 kb on + strand at 774.288 kb on - strand at 774.299 kb on - strand at 774.301 kb on - strand at 774.309 kb on - strand at 774.337 kb on - strand at 774.360 kb on - strand at 774.424 kb on + strand at 774.427 kb on - strand at 774.446 kb on - strand at 774.467 kb on + strand at 774.552 kb on - strand, within CCNA_00719 at 774.553 kb on + strand, within CCNA_00719 at 774.575 kb on + strand, within CCNA_00719 at 774.583 kb on + strand, within CCNA_00719 at 774.618 kb on + strand, within CCNA_00719 at 774.618 kb on + strand, within CCNA_00719 at 774.619 kb on + strand, within CCNA_00719 at 774.635 kb on + strand, within CCNA_00719 at 774.643 kb on - strand, within CCNA_00719 at 774.643 kb on - strand, within CCNA_00719 at 774.665 kb on + strand, within CCNA_00719 at 774.685 kb on + strand, within CCNA_00719 at 774.706 kb on + strand, within CCNA_00719 at 774.714 kb on - strand, within CCNA_00719
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 772,455 - CCNA_00718 0.63 +1.1 772,455 - CCNA_00718 0.63 +0.4 772,468 + CCNA_00718 0.65 +0.3 772,468 + CCNA_00718 0.65 -0.7 772,468 + CCNA_00718 0.65 +0.6 772,476 - CCNA_00718 0.66 -0.1 772,476 - CCNA_00718 0.66 +0.2 772,476 - CCNA_00718 0.66 -0.3 772,476 - CCNA_00718 0.66 +1.6 772,476 - CCNA_00718 0.66 -2.5 772,488 - CCNA_00718 0.67 +0.6 772,523 - CCNA_00718 0.71 -1.1 772,582 - CCNA_00718 0.77 +0.3 772,596 + CCNA_00718 0.79 -0.4 772,698 - -0.4 772,698 - +0.0 772,724 + +0.7 772,745 - +0.6 772,756 - -0.2 772,787 + -0.3 772,787 + +0.7 772,802 + CCNA_03930 0.11 -1.0 772,803 - CCNA_03930 0.12 +0.0 772,805 - CCNA_03930 0.14 -0.1 772,820 + CCNA_03930 0.29 +1.1 772,828 - CCNA_03930 0.36 +0.5 772,847 + CCNA_03930 0.54 +1.9 772,852 + CCNA_03930 0.59 +0.3 772,860 - CCNA_03930 0.67 +0.5 772,866 + CCNA_03930 0.72 +0.1 772,869 - CCNA_03930 0.75 +0.4 772,897 - +0.7 772,945 + +0.1 772,968 + -1.0 772,975 + +0.0 772,985 + -0.2 772,986 + -0.1 772,991 + +0.5 773,027 + +0.2 773,030 - +0.1 773,060 - +0.7 773,080 + +0.1 773,094 + +0.6 773,101 - +0.2 773,102 - +0.1 773,120 + +0.4 773,151 + +0.3 773,151 - -0.2 773,161 + +1.2 773,161 + -2.1 773,169 - +0.8 773,179 - +0.3 773,184 - +0.4 773,184 - +0.1 773,189 - -0.2 773,194 + +0.8 773,194 + -1.0 773,213 + -0.5 773,218 + -1.6 773,221 - +0.0 773,221 - -0.6 773,248 + +0.1 773,248 + +0.3 773,249 + +0.7 773,249 + +0.6 773,249 + -0.7 773,256 - +0.6 773,256 - +0.2 773,256 - +0.7 773,257 - +0.8 773,257 - +0.0 773,257 - +0.4 773,257 - +0.1 773,271 + -1.8 773,278 - +0.4 773,334 - +0.1 773,367 + +1.0 773,373 + -0.6 773,640 + CCNA_03931 0.69 -1.2 773,732 + +0.6 773,732 + +0.9 773,732 + +0.2 773,742 + -0.1 773,750 - -0.1 773,757 - -0.1 773,757 - +0.2 773,778 + CCNA_03932 0.18 -0.3 773,821 - CCNA_03932 0.35 +0.4 773,823 + CCNA_03932 0.35 -0.6 773,829 + CCNA_03932 0.38 -1.1 773,837 - CCNA_03932 0.41 +0.9 773,865 - CCNA_03932 0.52 +1.5 773,890 - CCNA_03932 0.62 +0.3 773,909 - CCNA_03932 0.69 +0.7 773,909 - CCNA_03932 0.69 +0.3 773,924 + CCNA_03932 0.75 -0.8 773,936 + CCNA_03932 0.80 +0.7 773,944 - CCNA_03932 0.83 +0.6 773,954 - CCNA_03932 0.87 +0.3 773,964 - +0.7 774,038 - +0.4 774,038 - +1.1 774,060 + CCNA_03933 0.16 -1.2 774,065 - CCNA_03933 0.18 +0.4 774,065 - CCNA_03933 0.18 +0.1 774,090 - CCNA_03933 0.28 +0.1 774,109 - CCNA_03933 0.35 +0.8 774,115 - CCNA_03933 0.37 +1.1 774,119 + CCNA_03933 0.39 +1.3 774,123 - CCNA_03933 0.40 +0.4 774,181 + CCNA_03933 0.62 +0.6 774,188 + CCNA_03933 0.65 +0.2 774,192 + CCNA_03933 0.67 -1.9 774,200 - CCNA_03933 0.70 +1.2 774,204 + CCNA_03933 0.71 -0.6 774,209 + CCNA_03933 0.73 -0.7 774,280 + +0.8 774,285 + +0.5 774,288 - +1.0 774,299 - -0.2 774,301 - -0.1 774,309 - +1.4 774,337 - +0.8 774,360 - +0.7 774,424 + -0.9 774,427 - -0.5 774,446 - +0.8 774,467 + +0.2 774,552 - CCNA_00719 0.13 +0.2 774,553 + CCNA_00719 0.13 -1.9 774,575 + CCNA_00719 0.15 -0.9 774,583 + CCNA_00719 0.15 +0.3 774,618 + CCNA_00719 0.18 +0.2 774,618 + CCNA_00719 0.18 +0.7 774,619 + CCNA_00719 0.18 +1.2 774,635 + CCNA_00719 0.19 +1.1 774,643 - CCNA_00719 0.20 +0.5 774,643 - CCNA_00719 0.20 +0.5 774,665 + CCNA_00719 0.22 -1.0 774,685 + CCNA_00719 0.23 +0.9 774,706 + CCNA_00719 0.25 -0.2 774,714 - CCNA_00719 0.26 -1.7
Or see this region's nucleotide sequence