Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03927

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00711 and CCNA_00712 are separated by 4 nucleotidesCCNA_00712 and CCNA_03926 are separated by 39 nucleotidesCCNA_03926 and CCNA_00714 are separated by 16 nucleotidesCCNA_00714 and CCNA_03927 are separated by 88 nucleotidesCCNA_03927 and CCNA_03928 are separated by 41 nucleotidesCCNA_03928 and CCNA_00716 are separated by 63 nucleotidesCCNA_00716 and CCNA_03929 are separated by 153 nucleotidesCCNA_03929 and CCNA_00718 are separated by 52 nucleotides CCNA_00711: CCNA_00711 - hypothetical protein, at 768,833 to 769,933 _00711 CCNA_00712: CCNA_00712 - hypothetical protein, at 769,938 to 770,252 _00712 CCNA_03926: CCNA_03926 - hypothetical protein, at 770,292 to 770,423 _03926 CCNA_00714: CCNA_00714 - hypothetical protein, at 770,440 to 770,709 _00714 CCNA_03927: CCNA_03927 - hypothetical protein, at 770,798 to 771,094 _03927 CCNA_03928: CCNA_03928 - hypothetical protein, at 771,136 to 771,327 _03928 CCNA_00716: CCNA_00716 - hypothetical protein, at 771,391 to 771,567 _00716 CCNA_03929: CCNA_03929 - hypothetical protein, at 771,721 to 771,834 _03929 CCNA_00718: CCNA_00718 - abortive infection protein, at 771,887 to 772,783 _00718 Position (kb) 770 771 772Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 769.830 kb on - strandat 769.864 kb on + strandat 769.904 kb on + strandat 769.944 kb on - strandat 770.008 kb on - strand, within CCNA_00712at 770.027 kb on - strand, within CCNA_00712at 770.068 kb on + strand, within CCNA_00712at 770.130 kb on - strand, within CCNA_00712at 770.130 kb on - strand, within CCNA_00712at 770.131 kb on + strand, within CCNA_00712at 770.211 kb on + strand, within CCNA_00712at 770.219 kb on - strand, within CCNA_00712at 770.261 kb on - strandat 770.266 kb on - strandat 770.267 kb on - strandat 770.270 kb on + strandat 770.270 kb on + strandat 770.278 kb on - strandat 770.297 kb on - strandat 770.359 kb on - strand, within CCNA_03926at 770.374 kb on - strand, within CCNA_03926at 770.378 kb on - strand, within CCNA_03926at 770.393 kb on + strand, within CCNA_03926at 770.393 kb on + strand, within CCNA_03926at 770.428 kb on - strandat 770.428 kb on - strandat 770.437 kb on + strandat 770.438 kb on - strandat 770.457 kb on + strandat 770.497 kb on + strand, within CCNA_00714at 770.515 kb on - strand, within CCNA_00714at 770.526 kb on + strand, within CCNA_00714at 770.534 kb on - strand, within CCNA_00714at 770.539 kb on - strand, within CCNA_00714at 770.544 kb on - strand, within CCNA_00714at 770.548 kb on + strand, within CCNA_00714at 770.548 kb on + strand, within CCNA_00714at 770.549 kb on - strand, within CCNA_00714at 770.556 kb on - strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.580 kb on + strand, within CCNA_00714at 770.580 kb on + strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.588 kb on + strand, within CCNA_00714at 770.619 kb on + strand, within CCNA_00714at 770.619 kb on + strand, within CCNA_00714at 770.646 kb on - strand, within CCNA_00714at 770.646 kb on - strand, within CCNA_00714at 770.685 kb on + strandat 770.685 kb on + strandat 770.685 kb on + strandat 770.693 kb on - strandat 770.693 kb on - strandat 770.715 kb on + strandat 770.745 kb on + strandat 770.745 kb on + strandat 770.993 kb on - strand, within CCNA_03927at 771.033 kb on + strand, within CCNA_03927at 771.033 kb on + strand, within CCNA_03927at 771.117 kb on - strandat 771.126 kb on - strandat 771.135 kb on + strandat 771.141 kb on - strandat 771.141 kb on - strandat 771.143 kb on - strandat 771.143 kb on - strandat 771.152 kb on + strandat 771.160 kb on - strand, within CCNA_03928at 771.181 kb on + strand, within CCNA_03928at 771.205 kb on + strand, within CCNA_03928at 771.212 kb on - strand, within CCNA_03928at 771.213 kb on - strand, within CCNA_03928at 771.213 kb on - strand, within CCNA_03928at 771.213 kb on - strand, within CCNA_03928at 771.224 kb on + strand, within CCNA_03928at 771.232 kb on - strand, within CCNA_03928at 771.232 kb on - strand, within CCNA_03928at 771.260 kb on + strand, within CCNA_03928at 771.268 kb on - strand, within CCNA_03928at 771.269 kb on + strand, within CCNA_03928at 771.307 kb on + strand, within CCNA_03928at 771.307 kb on + strand, within CCNA_03928at 771.333 kb on - strandat 771.336 kb on + strandat 771.336 kb on + strandat 771.346 kb on - strandat 771.381 kb on - strandat 771.401 kb on - strandat 771.428 kb on + strand, within CCNA_00716at 771.539 kb on + strand, within CCNA_00716at 771.539 kb on + strand, within CCNA_00716at 771.544 kb on + strand, within CCNA_00716at 771.547 kb on - strand, within CCNA_00716at 771.547 kb on - strand, within CCNA_00716at 771.550 kb on + strandat 771.552 kb on - strandat 771.666 kb on + strandat 771.666 kb on + strandat 771.682 kb on + strandat 771.696 kb on - strandat 771.696 kb on - strandat 771.696 kb on - strandat 771.696 kb on - strandat 771.717 kb on - strandat 771.717 kb on - strandat 771.727 kb on - strandat 771.765 kb on + strand, within CCNA_03929at 771.773 kb on - strand, within CCNA_03929at 771.773 kb on - strand, within CCNA_03929at 771.785 kb on - strand, within CCNA_03929at 771.798 kb on - strand, within CCNA_03929at 771.861 kb on + strandat 771.885 kb on + strandat 771.893 kb on - strandat 771.963 kb on - strandat 771.976 kb on + strandat 771.976 kb on + strandat 772.005 kb on + strand, within CCNA_00718at 772.005 kb on + strand, within CCNA_00718at 772.012 kb on + strand, within CCNA_00718at 772.013 kb on - strand, within CCNA_00718at 772.013 kb on - strand, within CCNA_00718at 772.013 kb on - strand, within CCNA_00718at 772.015 kb on - strand, within CCNA_00718

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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769,830 - +0.3
769,864 + +0.1
769,904 + +0.3
769,944 - +1.3
770,008 - CCNA_00712 0.22 +0.2
770,027 - CCNA_00712 0.28 +0.3
770,068 + CCNA_00712 0.41 -1.3
770,130 - CCNA_00712 0.61 -0.3
770,130 - CCNA_00712 0.61 +0.1
770,131 + CCNA_00712 0.61 +0.0
770,211 + CCNA_00712 0.87 -0.8
770,219 - CCNA_00712 0.89 +0.4
770,261 - -0.2
770,266 - +0.0
770,267 - +0.4
770,270 + +0.2
770,270 + -0.3
770,278 - -2.0
770,297 - -1.3
770,359 - CCNA_03926 0.51 +2.5
770,374 - CCNA_03926 0.62 +0.5
770,378 - CCNA_03926 0.65 -0.8
770,393 + CCNA_03926 0.77 +0.2
770,393 + CCNA_03926 0.77 -0.6
770,428 - +1.0
770,428 - +0.1
770,437 + +0.2
770,438 - -1.1
770,457 + +0.1
770,497 + CCNA_00714 0.21 -0.1
770,515 - CCNA_00714 0.28 +0.4
770,526 + CCNA_00714 0.32 -0.5
770,534 - CCNA_00714 0.35 +0.3
770,539 - CCNA_00714 0.37 -1.0
770,544 - CCNA_00714 0.39 +0.3
770,548 + CCNA_00714 0.40 +1.1
770,548 + CCNA_00714 0.40 -0.2
770,549 - CCNA_00714 0.40 -0.3
770,556 - CCNA_00714 0.43 +0.4
770,574 + CCNA_00714 0.50 -0.7
770,574 + CCNA_00714 0.50 +1.8
770,574 + CCNA_00714 0.50 +0.0
770,574 + CCNA_00714 0.50 +0.3
770,574 + CCNA_00714 0.50 +0.1
770,574 + CCNA_00714 0.50 -0.2
770,574 + CCNA_00714 0.50 +0.9
770,574 + CCNA_00714 0.50 -0.0
770,574 + CCNA_00714 0.50 -1.2
770,574 + CCNA_00714 0.50 -0.0
770,574 + CCNA_00714 0.50 -1.9
770,574 + CCNA_00714 0.50 -0.3
770,574 + CCNA_00714 0.50 -2.9
770,574 + CCNA_00714 0.50 -1.2
770,574 + CCNA_00714 0.50 +1.5
770,580 + CCNA_00714 0.52 -2.1
770,580 + CCNA_00714 0.52 -1.2
770,582 - CCNA_00714 0.53 -0.2
770,582 - CCNA_00714 0.53 -0.9
770,582 - CCNA_00714 0.53 -1.3
770,582 - CCNA_00714 0.53 -0.4
770,582 - CCNA_00714 0.53 -0.3
770,582 - CCNA_00714 0.53 -0.3
770,582 - CCNA_00714 0.53 -1.2
770,582 - CCNA_00714 0.53 +0.2
770,582 - CCNA_00714 0.53 -0.3
770,588 + CCNA_00714 0.55 -2.4
770,619 + CCNA_00714 0.66 -1.3
770,619 + CCNA_00714 0.66 +0.5
770,646 - CCNA_00714 0.76 -1.0
770,646 - CCNA_00714 0.76 +0.4
770,685 + -1.0
770,685 + -0.7
770,685 + -0.1
770,693 - -0.0
770,693 - +1.6
770,715 + -0.4
770,745 + +0.7
770,745 + +0.9
770,993 - CCNA_03927 0.66 +0.8
771,033 + CCNA_03927 0.79 -0.5
771,033 + CCNA_03927 0.79 -0.4
771,117 - -0.4
771,126 - -0.8
771,135 + -0.5
771,141 - -0.2
771,141 - +0.6
771,143 - +0.1
771,143 - -1.3
771,152 + +0.1
771,160 - CCNA_03928 0.12 -0.1
771,181 + CCNA_03928 0.23 -0.4
771,205 + CCNA_03928 0.36 -1.1
771,212 - CCNA_03928 0.40 -0.1
771,213 - CCNA_03928 0.40 +0.2
771,213 - CCNA_03928 0.40 -0.8
771,213 - CCNA_03928 0.40 -0.7
771,224 + CCNA_03928 0.46 -0.1
771,232 - CCNA_03928 0.50 +1.5
771,232 - CCNA_03928 0.50 -0.5
771,260 + CCNA_03928 0.65 -2.0
771,268 - CCNA_03928 0.69 +0.8
771,269 + CCNA_03928 0.69 +0.8
771,307 + CCNA_03928 0.89 +0.5
771,307 + CCNA_03928 0.89 -1.2
771,333 - +0.7
771,336 + -0.4
771,336 + -0.1
771,346 - -0.4
771,381 - +0.3
771,401 - -0.4
771,428 + CCNA_00716 0.21 +1.3
771,539 + CCNA_00716 0.84 -1.1
771,539 + CCNA_00716 0.84 -0.2
771,544 + CCNA_00716 0.86 -0.5
771,547 - CCNA_00716 0.88 +0.3
771,547 - CCNA_00716 0.88 +0.9
771,550 + +0.9
771,552 - +0.3
771,666 + -0.1
771,666 + +0.4
771,682 + +0.1
771,696 - +0.1
771,696 - +0.7
771,696 - -0.8
771,696 - -0.1
771,717 - +0.9
771,717 - +0.5
771,727 - -0.8
771,765 + CCNA_03929 0.39 -1.0
771,773 - CCNA_03929 0.46 -0.5
771,773 - CCNA_03929 0.46 -0.1
771,785 - CCNA_03929 0.56 -0.3
771,798 - CCNA_03929 0.68 +0.0
771,861 + -0.3
771,885 + -0.3
771,893 - +0.6
771,963 - -1.8
771,976 + -0.5
771,976 + -1.6
772,005 + CCNA_00718 0.13 +0.1
772,005 + CCNA_00718 0.13 +0.5
772,012 + CCNA_00718 0.14 -1.0
772,013 - CCNA_00718 0.14 +0.9
772,013 - CCNA_00718 0.14 +0.1
772,013 - CCNA_00718 0.14 -1.1
772,015 - CCNA_00718 0.14 -0.3

Or see this region's nucleotide sequence