Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03360 and CCNA_03905 are separated by 49 nucleotides CCNA_03905 and CCNA_03273 are separated by 161 nucleotides CCNA_03273 and CCNA_03362 overlap by 14 nucleotides
CCNA_03360: CCNA_03360 - tagatose-1,6-bisphosphate aldolase, at 3,538,659 to 3,539,750
_03360
CCNA_03905: CCNA_03905 - hypothetical protein, at 3,539,800 to 3,540,480
_03905
CCNA_03273: CCNA_03273 - hypothetical protein, at 3,540,642 to 3,541,286
_03273
CCNA_03362: CCNA_03362 - ECF-family RNA polymerase sigma factor, at 3,541,273 to 3,541,812
_03362
Position (kb)
3539
3540
3541 Strain fitness (log2 ratio)
-2
-1
0
1 at 3539.714 kb on + strand at 3539.778 kb on + strand at 3539.791 kb on - strand at 3539.791 kb on - strand at 3539.791 kb on - strand at 3539.816 kb on + strand at 3539.821 kb on + strand at 3539.840 kb on + strand at 3539.840 kb on + strand at 3539.840 kb on + strand at 3539.848 kb on - strand at 3539.848 kb on - strand at 3539.864 kb on + strand at 3539.869 kb on + strand, within CCNA_03905 at 3539.885 kb on + strand, within CCNA_03905 at 3539.890 kb on + strand, within CCNA_03905 at 3539.893 kb on - strand, within CCNA_03905 at 3539.904 kb on + strand, within CCNA_03905 at 3539.918 kb on - strand, within CCNA_03905 at 3539.926 kb on + strand, within CCNA_03905 at 3539.934 kb on - strand, within CCNA_03905 at 3539.952 kb on + strand, within CCNA_03905 at 3540.008 kb on + strand, within CCNA_03905 at 3540.042 kb on - strand, within CCNA_03905 at 3540.066 kb on + strand, within CCNA_03905 at 3540.081 kb on + strand, within CCNA_03905 at 3540.097 kb on + strand, within CCNA_03905 at 3540.097 kb on + strand, within CCNA_03905 at 3540.105 kb on - strand, within CCNA_03905 at 3540.105 kb on - strand, within CCNA_03905 at 3540.115 kb on + strand, within CCNA_03905 at 3540.115 kb on + strand, within CCNA_03905 at 3540.137 kb on - strand, within CCNA_03905 at 3540.162 kb on + strand, within CCNA_03905 at 3540.170 kb on - strand, within CCNA_03905 at 3540.214 kb on - strand, within CCNA_03905 at 3540.255 kb on + strand, within CCNA_03905 at 3540.257 kb on - strand, within CCNA_03905 at 3540.263 kb on - strand, within CCNA_03905 at 3540.325 kb on + strand, within CCNA_03905 at 3540.330 kb on + strand, within CCNA_03905 at 3540.338 kb on - strand, within CCNA_03905 at 3540.352 kb on + strand, within CCNA_03905 at 3540.352 kb on + strand, within CCNA_03905 at 3540.360 kb on - strand, within CCNA_03905 at 3540.360 kb on - strand, within CCNA_03905 at 3540.395 kb on + strand, within CCNA_03905 at 3540.396 kb on + strand, within CCNA_03905 at 3540.415 kb on - strand at 3540.417 kb on - strand at 3540.464 kb on - strand at 3540.464 kb on - strand at 3540.498 kb on + strand at 3540.499 kb on - strand at 3540.526 kb on + strand at 3540.649 kb on - strand at 3540.673 kb on + strand at 3540.681 kb on - strand at 3540.706 kb on - strand at 3540.708 kb on + strand, within CCNA_03273 at 3540.716 kb on - strand, within CCNA_03273 at 3540.716 kb on - strand, within CCNA_03273 at 3540.727 kb on + strand, within CCNA_03273 at 3540.750 kb on - strand, within CCNA_03273 at 3540.762 kb on - strand, within CCNA_03273 at 3540.824 kb on + strand, within CCNA_03273 at 3540.827 kb on - strand, within CCNA_03273 at 3540.915 kb on - strand, within CCNA_03273 at 3540.949 kb on - strand, within CCNA_03273 at 3540.969 kb on - strand, within CCNA_03273 at 3540.970 kb on - strand, within CCNA_03273 at 3541.003 kb on - strand, within CCNA_03273 at 3541.025 kb on - strand, within CCNA_03273 at 3541.094 kb on - strand, within CCNA_03273 at 3541.110 kb on - strand, within CCNA_03273 at 3541.115 kb on - strand, within CCNA_03273 at 3541.116 kb on + strand, within CCNA_03273 at 3541.131 kb on + strand, within CCNA_03273 at 3541.161 kb on - strand, within CCNA_03273 at 3541.188 kb on + strand, within CCNA_03273 at 3541.196 kb on - strand, within CCNA_03273 at 3541.196 kb on - strand, within CCNA_03273 at 3541.196 kb on - strand, within CCNA_03273 at 3541.196 kb on - strand, within CCNA_03273 at 3541.295 kb on + strand at 3541.403 kb on - strand, within CCNA_03362 at 3541.438 kb on + strand, within CCNA_03362 at 3541.441 kb on - strand, within CCNA_03362 at 3541.446 kb on - strand, within CCNA_03362 at 3541.450 kb on + strand, within CCNA_03362 at 3541.453 kb on - strand, within CCNA_03362 at 3541.473 kb on + strand, within CCNA_03362
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,539,714 + -0.1 3,539,778 + +1.1 3,539,791 - +0.2 3,539,791 - +0.7 3,539,791 - -0.7 3,539,816 + +0.5 3,539,821 + -0.4 3,539,840 + -0.5 3,539,840 + +0.2 3,539,840 + -1.0 3,539,848 - +0.0 3,539,848 - +0.2 3,539,864 + +0.5 3,539,869 + CCNA_03905 0.10 +0.4 3,539,885 + CCNA_03905 0.12 -0.4 3,539,890 + CCNA_03905 0.13 +1.0 3,539,893 - CCNA_03905 0.14 +0.2 3,539,904 + CCNA_03905 0.15 +0.0 3,539,918 - CCNA_03905 0.17 -0.3 3,539,926 + CCNA_03905 0.19 -0.6 3,539,934 - CCNA_03905 0.20 -0.3 3,539,952 + CCNA_03905 0.22 -0.5 3,540,008 + CCNA_03905 0.31 -0.2 3,540,042 - CCNA_03905 0.36 +0.9 3,540,066 + CCNA_03905 0.39 +1.5 3,540,081 + CCNA_03905 0.41 +0.4 3,540,097 + CCNA_03905 0.44 -0.8 3,540,097 + CCNA_03905 0.44 -0.1 3,540,105 - CCNA_03905 0.45 -0.2 3,540,105 - CCNA_03905 0.45 +0.3 3,540,115 + CCNA_03905 0.46 -0.8 3,540,115 + CCNA_03905 0.46 +0.2 3,540,137 - CCNA_03905 0.49 -0.6 3,540,162 + CCNA_03905 0.53 -1.1 3,540,170 - CCNA_03905 0.54 +0.1 3,540,214 - CCNA_03905 0.61 +0.2 3,540,255 + CCNA_03905 0.67 +0.4 3,540,257 - CCNA_03905 0.67 +0.0 3,540,263 - CCNA_03905 0.68 -0.1 3,540,325 + CCNA_03905 0.77 +0.2 3,540,330 + CCNA_03905 0.78 -0.2 3,540,338 - CCNA_03905 0.79 -0.0 3,540,352 + CCNA_03905 0.81 -1.0 3,540,352 + CCNA_03905 0.81 +0.4 3,540,360 - CCNA_03905 0.82 +0.6 3,540,360 - CCNA_03905 0.82 -0.6 3,540,395 + CCNA_03905 0.87 -1.2 3,540,396 + CCNA_03905 0.88 +0.1 3,540,415 - +0.5 3,540,417 - +0.3 3,540,464 - -0.0 3,540,464 - +0.5 3,540,498 + +0.6 3,540,499 - +0.3 3,540,526 + +0.7 3,540,649 - -0.3 3,540,673 + -0.3 3,540,681 - -0.1 3,540,706 - -0.3 3,540,708 + CCNA_03273 0.10 -2.5 3,540,716 - CCNA_03273 0.11 +0.1 3,540,716 - CCNA_03273 0.11 +0.1 3,540,727 + CCNA_03273 0.13 -0.8 3,540,750 - CCNA_03273 0.17 +0.5 3,540,762 - CCNA_03273 0.19 -0.4 3,540,824 + CCNA_03273 0.28 -0.7 3,540,827 - CCNA_03273 0.29 +0.7 3,540,915 - CCNA_03273 0.42 +1.3 3,540,949 - CCNA_03273 0.48 +0.3 3,540,969 - CCNA_03273 0.51 +0.1 3,540,970 - CCNA_03273 0.51 -0.5 3,541,003 - CCNA_03273 0.56 -0.0 3,541,025 - CCNA_03273 0.59 -1.2 3,541,094 - CCNA_03273 0.70 +0.6 3,541,110 - CCNA_03273 0.73 -0.7 3,541,115 - CCNA_03273 0.73 +0.2 3,541,116 + CCNA_03273 0.73 -0.3 3,541,131 + CCNA_03273 0.76 +0.1 3,541,161 - CCNA_03273 0.80 +0.1 3,541,188 + CCNA_03273 0.85 +0.7 3,541,196 - CCNA_03273 0.86 +0.3 3,541,196 - CCNA_03273 0.86 -0.5 3,541,196 - CCNA_03273 0.86 -0.4 3,541,196 - CCNA_03273 0.86 +0.1 3,541,295 + -0.2 3,541,403 - CCNA_03362 0.24 +0.1 3,541,438 + CCNA_03362 0.31 +0.4 3,541,441 - CCNA_03362 0.31 -0.3 3,541,446 - CCNA_03362 0.32 +0.0 3,541,450 + CCNA_03362 0.33 +0.1 3,541,453 - CCNA_03362 0.33 -1.0 3,541,473 + CCNA_03362 0.37 -0.6
Or see this region's nucleotide sequence