Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03876 and CCNA_03877 are separated by 258 nucleotides CCNA_03877 and CCNA_03878 overlap by 52 nucleotides CCNA_03878 and CCNA_03879 overlap by 4 nucleotides
CCNA_03876: CCNA_03876 - transcription termination factor rho, at 4,038,433 to 4,039,866
_03876
CCNA_03877: CCNA_03877 - conserved hypothetical membrane spanning protein, at 4,040,125 to 4,040,640
_03877
CCNA_03878: CCNA_03878 - ferrochelatase, at 4,040,589 to 4,041,632
_03878
CCNA_03879: CCNA_03879 - uroporphyrinogen decarboxylase, at 4,041,629 to 4,042,684
_03879
Position (kb)
4040
4041
4042 Strain fitness (log2 ratio)
-2
-1
0
1 at 4039.966 kb on - strand at 4039.981 kb on + strand at 4040.060 kb on + strand at 4040.068 kb on - strand at 4040.102 kb on + strand at 4040.123 kb on + strand at 4040.602 kb on + strand at 4040.698 kb on + strand, within CCNA_03878 at 4040.698 kb on + strand, within CCNA_03878 at 4040.706 kb on - strand, within CCNA_03878 at 4040.706 kb on - strand, within CCNA_03878 at 4040.706 kb on - strand, within CCNA_03878 at 4040.706 kb on - strand, within CCNA_03878 at 4040.706 kb on - strand, within CCNA_03878 at 4041.648 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 4,039,966 - -0.7 4,039,981 + +0.4 4,040,060 + +0.5 4,040,068 - +0.3 4,040,102 + +1.0 4,040,123 + -0.2 4,040,602 + -0.4 4,040,698 + CCNA_03878 0.10 -0.2 4,040,698 + CCNA_03878 0.10 -0.9 4,040,706 - CCNA_03878 0.11 -0.6 4,040,706 - CCNA_03878 0.11 -0.9 4,040,706 - CCNA_03878 0.11 -2.4 4,040,706 - CCNA_03878 0.11 -1.4 4,040,706 - CCNA_03878 0.11 -0.9 4,041,648 - +0.7
Or see this region's nucleotide sequence