Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03871 and CCNA_03872 are separated by 170 nucleotides CCNA_03872 and CCNA_03873 overlap by 26 nucleotides CCNA_03873 and CCNA_03874 are separated by 126 nucleotides
CCNA_03871: CCNA_03871 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, at 4,032,935 to 4,034,791
_03871
CCNA_03872: CCNA_03872 - tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase, at 4,034,962 to 4,036,332
_03872
CCNA_03873: CCNA_03873 - hypothetical protein, at 4,036,307 to 4,036,564
_03873
CCNA_03874: CCNA_03874 - carboxymethylenebutenolidase, at 4,036,691 to 4,037,386
_03874
Position (kb)
4034
4035
4036
4037 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4034.592 kb on - strand, within CCNA_03871 at 4034.808 kb on - strand at 4035.068 kb on - strand at 4035.113 kb on + strand, within CCNA_03872 at 4035.172 kb on - strand, within CCNA_03872 at 4035.223 kb on - strand, within CCNA_03872 at 4035.264 kb on - strand, within CCNA_03872 at 4035.272 kb on - strand, within CCNA_03872 at 4035.342 kb on - strand, within CCNA_03872 at 4035.418 kb on - strand, within CCNA_03872 at 4035.437 kb on + strand, within CCNA_03872 at 4035.461 kb on + strand, within CCNA_03872 at 4035.467 kb on + strand, within CCNA_03872 at 4035.493 kb on - strand, within CCNA_03872 at 4035.494 kb on + strand, within CCNA_03872 at 4035.512 kb on + strand, within CCNA_03872 at 4035.527 kb on - strand, within CCNA_03872 at 4035.542 kb on - strand, within CCNA_03872 at 4035.606 kb on - strand, within CCNA_03872 at 4035.735 kb on - strand, within CCNA_03872 at 4035.738 kb on + strand, within CCNA_03872 at 4035.738 kb on + strand, within CCNA_03872 at 4035.738 kb on + strand, within CCNA_03872 at 4035.756 kb on + strand, within CCNA_03872 at 4035.780 kb on + strand, within CCNA_03872 at 4035.817 kb on + strand, within CCNA_03872 at 4035.855 kb on + strand, within CCNA_03872 at 4035.886 kb on - strand, within CCNA_03872 at 4035.932 kb on + strand, within CCNA_03872 at 4035.932 kb on + strand, within CCNA_03872 at 4035.932 kb on + strand, within CCNA_03872 at 4035.942 kb on - strand, within CCNA_03872 at 4036.114 kb on + strand, within CCNA_03872 at 4036.142 kb on + strand, within CCNA_03872 at 4036.158 kb on + strand, within CCNA_03872 at 4036.329 kb on + strand at 4036.331 kb on + strand at 4036.337 kb on - strand, within CCNA_03873 at 4036.467 kb on + strand, within CCNA_03873 at 4036.498 kb on + strand, within CCNA_03873 at 4036.498 kb on + strand, within CCNA_03873 at 4036.508 kb on + strand, within CCNA_03873 at 4036.578 kb on - strand at 4036.592 kb on - strand at 4036.610 kb on - strand at 4036.610 kb on - strand at 4036.616 kb on + strand at 4036.616 kb on + strand at 4036.616 kb on + strand at 4036.616 kb on + strand at 4036.621 kb on + strand at 4036.621 kb on + strand at 4036.621 kb on + strand at 4036.621 kb on + strand at 4036.621 kb on + strand at 4036.621 kb on + strand at 4036.621 kb on + strand at 4036.621 kb on + strand at 4036.621 kb on + strand at 4036.621 kb on + strand at 4036.621 kb on + strand at 4036.621 kb on + strand at 4036.624 kb on - strand at 4036.629 kb on - strand at 4036.629 kb on - strand at 4036.629 kb on - strand at 4036.629 kb on - strand at 4036.629 kb on - strand at 4036.629 kb on - strand at 4036.629 kb on - strand at 4036.629 kb on - strand at 4036.629 kb on - strand at 4036.629 kb on - strand at 4036.657 kb on + strand at 4036.683 kb on - strand at 4036.716 kb on - strand at 4036.750 kb on + strand at 4036.812 kb on - strand, within CCNA_03874 at 4036.841 kb on + strand, within CCNA_03874 at 4036.953 kb on - strand, within CCNA_03874 at 4037.032 kb on + strand, within CCNA_03874 at 4037.042 kb on + strand, within CCNA_03874 at 4037.120 kb on + strand, within CCNA_03874 at 4037.284 kb on + strand, within CCNA_03874 at 4037.287 kb on - strand, within CCNA_03874 at 4037.317 kb on - strand at 4037.325 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 4,034,592 - CCNA_03871 0.89 -1.2 4,034,808 - -0.0 4,035,068 - +1.0 4,035,113 + CCNA_03872 0.11 +1.6 4,035,172 - CCNA_03872 0.15 -0.1 4,035,223 - CCNA_03872 0.19 -1.2 4,035,264 - CCNA_03872 0.22 +1.1 4,035,272 - CCNA_03872 0.23 -1.9 4,035,342 - CCNA_03872 0.28 -1.1 4,035,418 - CCNA_03872 0.33 -1.8 4,035,437 + CCNA_03872 0.35 -0.6 4,035,461 + CCNA_03872 0.36 -0.6 4,035,467 + CCNA_03872 0.37 -1.0 4,035,493 - CCNA_03872 0.39 -0.9 4,035,494 + CCNA_03872 0.39 -0.3 4,035,512 + CCNA_03872 0.40 -0.2 4,035,527 - CCNA_03872 0.41 -0.4 4,035,542 - CCNA_03872 0.42 +0.6 4,035,606 - CCNA_03872 0.47 -1.2 4,035,735 - CCNA_03872 0.56 -1.2 4,035,738 + CCNA_03872 0.57 -1.1 4,035,738 + CCNA_03872 0.57 -1.0 4,035,738 + CCNA_03872 0.57 -0.3 4,035,756 + CCNA_03872 0.58 -1.0 4,035,780 + CCNA_03872 0.60 -1.1 4,035,817 + CCNA_03872 0.62 -2.1 4,035,855 + CCNA_03872 0.65 -1.4 4,035,886 - CCNA_03872 0.67 -0.7 4,035,932 + CCNA_03872 0.71 -0.2 4,035,932 + CCNA_03872 0.71 -1.3 4,035,932 + CCNA_03872 0.71 +2.1 4,035,942 - CCNA_03872 0.71 -0.9 4,036,114 + CCNA_03872 0.84 -1.5 4,036,142 + CCNA_03872 0.86 +0.2 4,036,158 + CCNA_03872 0.87 -1.5 4,036,329 + -1.8 4,036,331 + -0.8 4,036,337 - CCNA_03873 0.12 +0.4 4,036,467 + CCNA_03873 0.62 +0.2 4,036,498 + CCNA_03873 0.74 -0.2 4,036,498 + CCNA_03873 0.74 -0.8 4,036,508 + CCNA_03873 0.78 -1.0 4,036,578 - +0.2 4,036,592 - +0.2 4,036,610 - +1.6 4,036,610 - +0.4 4,036,616 + +0.4 4,036,616 + +0.1 4,036,616 + -0.2 4,036,616 + +0.3 4,036,621 + +0.9 4,036,621 + +0.8 4,036,621 + -0.8 4,036,621 + +1.1 4,036,621 + +0.3 4,036,621 + -0.2 4,036,621 + -1.1 4,036,621 + -0.2 4,036,621 + -1.1 4,036,621 + +1.0 4,036,621 + +0.5 4,036,621 + -0.2 4,036,624 - -0.1 4,036,629 - +0.5 4,036,629 - +0.9 4,036,629 - -0.3 4,036,629 - +0.4 4,036,629 - -0.3 4,036,629 - +1.2 4,036,629 - +0.6 4,036,629 - +0.1 4,036,629 - -0.7 4,036,629 - +0.3 4,036,657 + -0.1 4,036,683 - +0.5 4,036,716 - -0.1 4,036,750 + -0.2 4,036,812 - CCNA_03874 0.17 -0.2 4,036,841 + CCNA_03874 0.22 +0.2 4,036,953 - CCNA_03874 0.38 -0.2 4,037,032 + CCNA_03874 0.49 +0.4 4,037,042 + CCNA_03874 0.50 +0.4 4,037,120 + CCNA_03874 0.62 -0.1 4,037,284 + CCNA_03874 0.85 +0.0 4,037,287 - CCNA_03874 0.86 -0.6 4,037,317 - -0.4 4,037,325 - +1.2
Or see this region's nucleotide sequence