Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03869 and CCNA_03870 overlap by 11 nucleotides CCNA_03870 and CCNA_03871 overlap by 11 nucleotides CCNA_03871 and CCNA_03872 are separated by 170 nucleotides
CCNA_03869: CCNA_03869 - chromosome partitioning protein ParA, at 4,031,502 to 4,032,305
_03869
CCNA_03870: CCNA_03870 - methyltransferase GidB, at 4,032,295 to 4,032,945
_03870
CCNA_03871: CCNA_03871 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, at 4,032,935 to 4,034,791
_03871
CCNA_03872: CCNA_03872 - tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase, at 4,034,962 to 4,036,332
_03872
Position (kb)
4032
4033
4034
4035 Strain fitness (log2 ratio)
-2
-1
0
1 at 4032.292 kb on + strand at 4032.346 kb on + strand at 4032.368 kb on + strand, within CCNA_03870 at 4032.423 kb on - strand, within CCNA_03870 at 4032.425 kb on + strand, within CCNA_03870 at 4032.494 kb on + strand, within CCNA_03870 at 4032.522 kb on - strand, within CCNA_03870 at 4032.569 kb on - strand, within CCNA_03870 at 4032.602 kb on - strand, within CCNA_03870 at 4032.644 kb on - strand, within CCNA_03870 at 4032.655 kb on - strand, within CCNA_03870 at 4032.655 kb on - strand, within CCNA_03870 at 4032.655 kb on - strand, within CCNA_03870 at 4032.685 kb on - strand, within CCNA_03870 at 4032.695 kb on - strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.770 kb on + strand, within CCNA_03870 at 4032.826 kb on + strand, within CCNA_03870 at 4032.836 kb on + strand, within CCNA_03870 at 4032.881 kb on + strand at 4032.940 kb on - strand at 4033.004 kb on - strand at 4033.644 kb on + strand, within CCNA_03871 at 4033.794 kb on + strand, within CCNA_03871 at 4033.802 kb on - strand, within CCNA_03871 at 4034.592 kb on - strand, within CCNA_03871 at 4034.808 kb on - strand at 4035.068 kb on - strand at 4035.113 kb on + strand, within CCNA_03872 at 4035.172 kb on - strand, within CCNA_03872 at 4035.223 kb on - strand, within CCNA_03872 at 4035.264 kb on - strand, within CCNA_03872 at 4035.272 kb on - strand, within CCNA_03872 at 4035.342 kb on - strand, within CCNA_03872 at 4035.418 kb on - strand, within CCNA_03872 at 4035.437 kb on + strand, within CCNA_03872 at 4035.461 kb on + strand, within CCNA_03872 at 4035.467 kb on + strand, within CCNA_03872 at 4035.493 kb on - strand, within CCNA_03872 at 4035.494 kb on + strand, within CCNA_03872 at 4035.512 kb on + strand, within CCNA_03872 at 4035.527 kb on - strand, within CCNA_03872 at 4035.542 kb on - strand, within CCNA_03872 at 4035.606 kb on - strand, within CCNA_03872 at 4035.735 kb on - strand, within CCNA_03872 at 4035.738 kb on + strand, within CCNA_03872 at 4035.738 kb on + strand, within CCNA_03872 at 4035.738 kb on + strand, within CCNA_03872 at 4035.756 kb on + strand, within CCNA_03872 at 4035.780 kb on + strand, within CCNA_03872
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 4,032,292 + +0.3 4,032,346 + -0.1 4,032,368 + CCNA_03870 0.11 +0.4 4,032,423 - CCNA_03870 0.20 -0.2 4,032,425 + CCNA_03870 0.20 -0.0 4,032,494 + CCNA_03870 0.31 +0.6 4,032,522 - CCNA_03870 0.35 -0.3 4,032,569 - CCNA_03870 0.42 +0.2 4,032,602 - CCNA_03870 0.47 +0.1 4,032,644 - CCNA_03870 0.54 +0.8 4,032,655 - CCNA_03870 0.55 -0.1 4,032,655 - CCNA_03870 0.55 +0.2 4,032,655 - CCNA_03870 0.55 +0.1 4,032,685 - CCNA_03870 0.60 +0.3 4,032,695 - CCNA_03870 0.61 -1.0 4,032,754 + CCNA_03870 0.71 -0.5 4,032,754 + CCNA_03870 0.71 -0.6 4,032,754 + CCNA_03870 0.71 +0.9 4,032,754 + CCNA_03870 0.71 -0.6 4,032,754 + CCNA_03870 0.71 -0.5 4,032,754 + CCNA_03870 0.71 -0.8 4,032,754 + CCNA_03870 0.71 -0.5 4,032,754 + CCNA_03870 0.71 +0.4 4,032,762 - CCNA_03870 0.72 +0.4 4,032,762 - CCNA_03870 0.72 +0.4 4,032,762 - CCNA_03870 0.72 +0.2 4,032,762 - CCNA_03870 0.72 +0.2 4,032,762 - CCNA_03870 0.72 -0.4 4,032,762 - CCNA_03870 0.72 +0.6 4,032,770 + CCNA_03870 0.73 -0.6 4,032,826 + CCNA_03870 0.82 -0.3 4,032,836 + CCNA_03870 0.83 +0.2 4,032,881 + +0.3 4,032,940 - -0.7 4,033,004 - +0.6 4,033,644 + CCNA_03871 0.38 -2.0 4,033,794 + CCNA_03871 0.46 +0.5 4,033,802 - CCNA_03871 0.47 -1.0 4,034,592 - CCNA_03871 0.89 -1.2 4,034,808 - -0.0 4,035,068 - +1.0 4,035,113 + CCNA_03872 0.11 +1.6 4,035,172 - CCNA_03872 0.15 -0.1 4,035,223 - CCNA_03872 0.19 -1.2 4,035,264 - CCNA_03872 0.22 +1.1 4,035,272 - CCNA_03872 0.23 -1.9 4,035,342 - CCNA_03872 0.28 -1.1 4,035,418 - CCNA_03872 0.33 -1.8 4,035,437 + CCNA_03872 0.35 -0.6 4,035,461 + CCNA_03872 0.36 -0.6 4,035,467 + CCNA_03872 0.37 -1.0 4,035,493 - CCNA_03872 0.39 -0.9 4,035,494 + CCNA_03872 0.39 -0.3 4,035,512 + CCNA_03872 0.40 -0.2 4,035,527 - CCNA_03872 0.41 -0.4 4,035,542 - CCNA_03872 0.42 +0.6 4,035,606 - CCNA_03872 0.47 -1.2 4,035,735 - CCNA_03872 0.56 -1.2 4,035,738 + CCNA_03872 0.57 -1.1 4,035,738 + CCNA_03872 0.57 -1.0 4,035,738 + CCNA_03872 0.57 -0.3 4,035,756 + CCNA_03872 0.58 -1.0 4,035,780 + CCNA_03872 0.60 -1.1
Or see this region's nucleotide sequence