Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03859 and CCNA_03860 are separated by 73 nucleotides CCNA_03860 and CCNA_03861 overlap by 4 nucleotides CCNA_03861 and CCNA_03862 are separated by 12 nucleotides CCNA_03862 and CCNA_03863 are separated by 6 nucleotides
CCNA_03859: CCNA_03859 - two-component response regulator cenR, at 4,022,266 to 4,022,952
_03859
CCNA_03860: CCNA_03860 - hypothetical protein, at 4,023,026 to 4,023,535
_03860
CCNA_03861: CCNA_03861 - pyridoxal 5'-phosphate dependent enzyme class III, at 4,023,532 to 4,024,185
_03861
CCNA_03862: CCNA_03862 - thiamine monophosphate synthase TenI, at 4,024,198 to 4,024,818
_03862
CCNA_03863: CCNA_03863 - hypothetical protein, at 4,024,825 to 4,025,235
_03863
Position (kb)
4023
4024
4025 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4022.560 kb on - strand, within CCNA_03859 at 4022.560 kb on - strand, within CCNA_03859 at 4022.576 kb on - strand, within CCNA_03859 at 4022.799 kb on + strand, within CCNA_03859 at 4022.936 kb on - strand at 4022.954 kb on - strand at 4022.957 kb on - strand at 4022.970 kb on + strand at 4022.987 kb on - strand at 4022.992 kb on - strand at 4022.992 kb on - strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.031 kb on + strand at 4023.181 kb on - strand, within CCNA_03860 at 4023.181 kb on - strand, within CCNA_03860 at 4023.203 kb on + strand, within CCNA_03860 at 4023.203 kb on + strand, within CCNA_03860 at 4023.211 kb on - strand, within CCNA_03860 at 4023.216 kb on + strand, within CCNA_03860 at 4023.238 kb on + strand, within CCNA_03860 at 4023.306 kb on - strand, within CCNA_03860 at 4023.341 kb on + strand, within CCNA_03860 at 4023.349 kb on - strand, within CCNA_03860 at 4023.416 kb on + strand, within CCNA_03860 at 4023.424 kb on - strand, within CCNA_03860 at 4023.523 kb on - strand at 4023.548 kb on + strand at 4023.823 kb on - strand, within CCNA_03861 at 4023.986 kb on - strand, within CCNA_03861 at 4024.021 kb on - strand, within CCNA_03861 at 4024.030 kb on + strand, within CCNA_03861 at 4024.052 kb on - strand, within CCNA_03861 at 4024.085 kb on + strand, within CCNA_03861 at 4024.085 kb on + strand, within CCNA_03861 at 4024.086 kb on - strand, within CCNA_03861 at 4024.093 kb on - strand, within CCNA_03861 at 4024.093 kb on - strand, within CCNA_03861 at 4024.112 kb on - strand, within CCNA_03861 at 4024.143 kb on - strand at 4024.182 kb on + strand at 4024.195 kb on + strand at 4024.195 kb on + strand at 4024.195 kb on + strand at 4024.195 kb on + strand at 4024.195 kb on + strand at 4024.205 kb on - strand at 4024.232 kb on - strand at 4024.235 kb on - strand at 4024.813 kb on + strand at 4024.917 kb on + strand, within CCNA_03863 at 4024.925 kb on - strand, within CCNA_03863 at 4024.953 kb on + strand, within CCNA_03863 at 4024.961 kb on - strand, within CCNA_03863 at 4024.970 kb on + strand, within CCNA_03863 at 4024.978 kb on - strand, within CCNA_03863 at 4025.023 kb on - strand, within CCNA_03863 at 4025.111 kb on + strand, within CCNA_03863 at 4025.158 kb on - strand, within CCNA_03863
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 4,022,560 - CCNA_03859 0.43 -0.4 4,022,560 - CCNA_03859 0.43 +0.6 4,022,576 - CCNA_03859 0.45 -0.0 4,022,799 + CCNA_03859 0.78 -0.0 4,022,936 - -0.2 4,022,954 - +0.2 4,022,957 - +0.1 4,022,970 + -0.8 4,022,987 - +0.6 4,022,992 - +0.6 4,022,992 - -0.5 4,023,001 + -1.0 4,023,001 + -0.3 4,023,001 + -0.2 4,023,001 + -0.2 4,023,001 + +0.4 4,023,001 + +0.2 4,023,001 + -0.1 4,023,001 + -1.3 4,023,009 - +0.5 4,023,009 - +0.5 4,023,009 - -1.2 4,023,009 - +0.4 4,023,009 - -1.8 4,023,009 - +0.8 4,023,031 + -0.0 4,023,181 - CCNA_03860 0.30 -0.3 4,023,181 - CCNA_03860 0.30 -2.9 4,023,203 + CCNA_03860 0.35 -1.3 4,023,203 + CCNA_03860 0.35 +0.2 4,023,211 - CCNA_03860 0.36 +0.0 4,023,216 + CCNA_03860 0.37 -0.8 4,023,238 + CCNA_03860 0.42 -0.1 4,023,306 - CCNA_03860 0.55 -0.3 4,023,341 + CCNA_03860 0.62 +0.1 4,023,349 - CCNA_03860 0.63 +0.1 4,023,416 + CCNA_03860 0.76 +0.5 4,023,424 - CCNA_03860 0.78 +0.6 4,023,523 - -0.4 4,023,548 + +0.6 4,023,823 - CCNA_03861 0.44 -0.7 4,023,986 - CCNA_03861 0.69 -0.3 4,024,021 - CCNA_03861 0.75 -0.0 4,024,030 + CCNA_03861 0.76 +0.3 4,024,052 - CCNA_03861 0.80 +0.1 4,024,085 + CCNA_03861 0.85 -2.2 4,024,085 + CCNA_03861 0.85 -1.4 4,024,086 - CCNA_03861 0.85 -1.0 4,024,093 - CCNA_03861 0.86 -1.1 4,024,093 - CCNA_03861 0.86 -2.3 4,024,112 - CCNA_03861 0.89 +0.3 4,024,143 - -0.2 4,024,182 + +0.4 4,024,195 + +0.5 4,024,195 + -0.2 4,024,195 + -0.9 4,024,195 + +1.6 4,024,195 + -0.1 4,024,205 - -0.8 4,024,232 - +0.4 4,024,235 - -0.5 4,024,813 + +0.5 4,024,917 + CCNA_03863 0.22 -0.5 4,024,925 - CCNA_03863 0.24 +0.4 4,024,953 + CCNA_03863 0.31 -1.4 4,024,961 - CCNA_03863 0.33 +0.2 4,024,970 + CCNA_03863 0.35 -0.2 4,024,978 - CCNA_03863 0.37 +0.2 4,025,023 - CCNA_03863 0.48 +0.2 4,025,111 + CCNA_03863 0.70 -0.4 4,025,158 - CCNA_03863 0.81 +0.1
Or see this region's nucleotide sequence