Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03857 and CCNA_03858 are separated by 145 nucleotides CCNA_03858 and CCNA_03859 are separated by 61 nucleotides CCNA_03859 and CCNA_03860 are separated by 73 nucleotides CCNA_03860 and CCNA_03861 overlap by 4 nucleotides
CCNA_03857: CCNA_03857 - Tim44-like domain protein, at 4,020,965 to 4,021,567
_03857
CCNA_03858: CCNA_03858 - protein translocase subunit secB, at 4,021,713 to 4,022,204
_03858
CCNA_03859: CCNA_03859 - two-component response regulator cenR, at 4,022,266 to 4,022,952
_03859
CCNA_03860: CCNA_03860 - hypothetical protein, at 4,023,026 to 4,023,535
_03860
CCNA_03861: CCNA_03861 - pyridoxal 5'-phosphate dependent enzyme class III, at 4,023,532 to 4,024,185
_03861
Position (kb)
4022
4023 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4021.296 kb on + strand, within CCNA_03857 at 4021.296 kb on + strand, within CCNA_03857 at 4021.304 kb on - strand, within CCNA_03857 at 4021.399 kb on - strand, within CCNA_03857 at 4021.413 kb on - strand, within CCNA_03857 at 4021.452 kb on + strand, within CCNA_03857 at 4021.502 kb on - strand, within CCNA_03857 at 4021.583 kb on + strand at 4021.591 kb on - strand at 4021.591 kb on - strand at 4021.616 kb on + strand at 4021.633 kb on - strand at 4021.650 kb on - strand at 4021.729 kb on + strand at 4021.749 kb on - strand at 4021.751 kb on + strand at 4021.782 kb on - strand, within CCNA_03858 at 4021.910 kb on + strand, within CCNA_03858 at 4021.910 kb on + strand, within CCNA_03858 at 4021.979 kb on + strand, within CCNA_03858 at 4021.987 kb on - strand, within CCNA_03858 at 4021.987 kb on - strand, within CCNA_03858 at 4021.987 kb on - strand, within CCNA_03858 at 4021.987 kb on - strand, within CCNA_03858 at 4022.000 kb on - strand, within CCNA_03858 at 4022.002 kb on - strand, within CCNA_03858 at 4022.143 kb on - strand, within CCNA_03858 at 4022.158 kb on - strand at 4022.158 kb on - strand at 4022.158 kb on - strand at 4022.158 kb on - strand at 4022.169 kb on + strand at 4022.177 kb on - strand at 4022.198 kb on + strand at 4022.264 kb on + strand at 4022.285 kb on - strand at 4022.404 kb on - strand, within CCNA_03859 at 4022.404 kb on - strand, within CCNA_03859 at 4022.420 kb on - strand, within CCNA_03859 at 4022.432 kb on + strand, within CCNA_03859 at 4022.432 kb on + strand, within CCNA_03859 at 4022.440 kb on - strand, within CCNA_03859 at 4022.449 kb on + strand, within CCNA_03859 at 4022.560 kb on - strand, within CCNA_03859 at 4022.560 kb on - strand, within CCNA_03859 at 4022.576 kb on - strand, within CCNA_03859 at 4022.799 kb on + strand, within CCNA_03859 at 4022.936 kb on - strand at 4022.954 kb on - strand at 4022.957 kb on - strand at 4022.970 kb on + strand at 4022.987 kb on - strand at 4022.992 kb on - strand at 4022.992 kb on - strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.031 kb on + strand at 4023.181 kb on - strand, within CCNA_03860 at 4023.181 kb on - strand, within CCNA_03860 at 4023.203 kb on + strand, within CCNA_03860 at 4023.203 kb on + strand, within CCNA_03860 at 4023.211 kb on - strand, within CCNA_03860 at 4023.216 kb on + strand, within CCNA_03860 at 4023.238 kb on + strand, within CCNA_03860 at 4023.306 kb on - strand, within CCNA_03860 at 4023.341 kb on + strand, within CCNA_03860 at 4023.349 kb on - strand, within CCNA_03860 at 4023.416 kb on + strand, within CCNA_03860 at 4023.424 kb on - strand, within CCNA_03860 at 4023.523 kb on - strand at 4023.548 kb on + strand at 4023.823 kb on - strand, within CCNA_03861
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 4,021,296 + CCNA_03857 0.55 -0.3 4,021,296 + CCNA_03857 0.55 +1.2 4,021,304 - CCNA_03857 0.56 -0.5 4,021,399 - CCNA_03857 0.72 +0.1 4,021,413 - CCNA_03857 0.74 -1.3 4,021,452 + CCNA_03857 0.81 +1.0 4,021,502 - CCNA_03857 0.89 -0.1 4,021,583 + -0.2 4,021,591 - +0.0 4,021,591 - +0.2 4,021,616 + -0.1 4,021,633 - -0.1 4,021,650 - +0.6 4,021,729 + +0.3 4,021,749 - -1.2 4,021,751 + +0.3 4,021,782 - CCNA_03858 0.14 +0.8 4,021,910 + CCNA_03858 0.40 +0.2 4,021,910 + CCNA_03858 0.40 -0.2 4,021,979 + CCNA_03858 0.54 -0.1 4,021,987 - CCNA_03858 0.56 +0.0 4,021,987 - CCNA_03858 0.56 -1.6 4,021,987 - CCNA_03858 0.56 +0.0 4,021,987 - CCNA_03858 0.56 +0.6 4,022,000 - CCNA_03858 0.58 -0.5 4,022,002 - CCNA_03858 0.59 +0.6 4,022,143 - CCNA_03858 0.87 +0.4 4,022,158 - +0.2 4,022,158 - +0.9 4,022,158 - +0.1 4,022,158 - -0.2 4,022,169 + +1.0 4,022,177 - +0.8 4,022,198 + +0.6 4,022,264 + +0.0 4,022,285 - -0.8 4,022,404 - CCNA_03859 0.20 +0.2 4,022,404 - CCNA_03859 0.20 -1.1 4,022,420 - CCNA_03859 0.22 -1.3 4,022,432 + CCNA_03859 0.24 -1.2 4,022,432 + CCNA_03859 0.24 +0.6 4,022,440 - CCNA_03859 0.25 -1.0 4,022,449 + CCNA_03859 0.27 -1.0 4,022,560 - CCNA_03859 0.43 -0.4 4,022,560 - CCNA_03859 0.43 +0.6 4,022,576 - CCNA_03859 0.45 -0.0 4,022,799 + CCNA_03859 0.78 -0.0 4,022,936 - -0.2 4,022,954 - +0.2 4,022,957 - +0.1 4,022,970 + -0.8 4,022,987 - +0.6 4,022,992 - +0.6 4,022,992 - -0.5 4,023,001 + -1.0 4,023,001 + -0.3 4,023,001 + -0.2 4,023,001 + -0.2 4,023,001 + +0.4 4,023,001 + +0.2 4,023,001 + -0.1 4,023,001 + -1.3 4,023,009 - +0.5 4,023,009 - +0.5 4,023,009 - -1.2 4,023,009 - +0.4 4,023,009 - -1.8 4,023,009 - +0.8 4,023,031 + -0.0 4,023,181 - CCNA_03860 0.30 -0.3 4,023,181 - CCNA_03860 0.30 -2.9 4,023,203 + CCNA_03860 0.35 -1.3 4,023,203 + CCNA_03860 0.35 +0.2 4,023,211 - CCNA_03860 0.36 +0.0 4,023,216 + CCNA_03860 0.37 -0.8 4,023,238 + CCNA_03860 0.42 -0.1 4,023,306 - CCNA_03860 0.55 -0.3 4,023,341 + CCNA_03860 0.62 +0.1 4,023,349 - CCNA_03860 0.63 +0.1 4,023,416 + CCNA_03860 0.76 +0.5 4,023,424 - CCNA_03860 0.78 +0.6 4,023,523 - -0.4 4,023,548 + +0.6 4,023,823 - CCNA_03861 0.44 -0.7
Or see this region's nucleotide sequence