Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03836

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03835 and CCNA_03836 are separated by 70 nucleotidesCCNA_03836 and CCNA_03837 are separated by 70 nucleotidesCCNA_03837 and CCNA_03838 are separated by 72 nucleotides CCNA_03835: CCNA_03835 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 4,000,678 to 4,001,889 _03835 CCNA_03836: CCNA_03836 - 3-hydroxydecanoyl-(acyl-carrier-protein) dehydratase, at 4,001,960 to 4,002,472 _03836 CCNA_03837: CCNA_03837 - bacterial SH3 domain protein, at 4,002,543 to 4,003,088 _03837 CCNA_03838: CCNA_03838 - gluconate 2-dehydrogenase/glyoxylate reductase/hydroxypyruvate reductase, at 4,003,161 to 4,004,147 _03838 Position (kb) 4001 4002 4003Strain fitness (log2 ratio) -2 -1 0 1 2at 4000.994 kb on - strand, within CCNA_03835at 4001.127 kb on - strand, within CCNA_03835at 4001.132 kb on + strand, within CCNA_03835at 4001.250 kb on - strand, within CCNA_03835at 4001.266 kb on - strand, within CCNA_03835at 4001.314 kb on + strand, within CCNA_03835at 4001.330 kb on - strand, within CCNA_03835at 4001.486 kb on + strand, within CCNA_03835at 4001.494 kb on - strand, within CCNA_03835at 4001.673 kb on - strand, within CCNA_03835at 4001.673 kb on - strand, within CCNA_03835at 4001.934 kb on + strandat 4001.934 kb on + strandat 4001.934 kb on + strandat 4001.934 kb on + strandat 4001.934 kb on + strandat 4001.934 kb on + strandat 4001.934 kb on + strandat 4001.942 kb on - strandat 4001.942 kb on - strandat 4001.942 kb on - strandat 4001.942 kb on - strandat 4001.942 kb on - strandat 4001.942 kb on - strandat 4001.958 kb on + strandat 4002.459 kb on + strandat 4002.482 kb on - strandat 4002.509 kb on + strandat 4002.511 kb on - strandat 4002.540 kb on + strandat 4002.548 kb on - strandat 4003.044 kb on + strandat 4003.044 kb on + strandat 4003.044 kb on + strandat 4003.044 kb on + strandat 4003.044 kb on + strandat 4003.052 kb on - strandat 4003.052 kb on - strandat 4003.083 kb on - strandat 4003.100 kb on - strandat 4003.105 kb on - strandat 4003.105 kb on - strandat 4003.157 kb on + strandat 4003.157 kb on + strandat 4003.157 kb on + strandat 4003.165 kb on - strandat 4003.165 kb on - strandat 4003.165 kb on - strandat 4003.174 kb on + strandat 4003.200 kb on - strandat 4003.207 kb on + strandat 4003.233 kb on - strandat 4003.235 kb on + strandat 4003.241 kb on - strandat 4003.243 kb on - strandat 4003.243 kb on - strandat 4003.253 kb on - strandat 4003.265 kb on + strand, within CCNA_03838at 4003.273 kb on - strand, within CCNA_03838at 4003.372 kb on + strand, within CCNA_03838at 4003.372 kb on + strand, within CCNA_03838at 4003.372 kb on + strand, within CCNA_03838at 4003.373 kb on + strand, within CCNA_03838at 4003.380 kb on - strand, within CCNA_03838at 4003.380 kb on - strand, within CCNA_03838at 4003.380 kb on - strand, within CCNA_03838at 4003.381 kb on - strand, within CCNA_03838at 4003.428 kb on + strand, within CCNA_03838at 4003.436 kb on - strand, within CCNA_03838at 4003.467 kb on - strand, within CCNA_03838

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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4,000,994 - CCNA_03835 0.26 -0.4
4,001,127 - CCNA_03835 0.37 -0.0
4,001,132 + CCNA_03835 0.37 +0.6
4,001,250 - CCNA_03835 0.47 +0.6
4,001,266 - CCNA_03835 0.49 -0.0
4,001,314 + CCNA_03835 0.52 +2.0
4,001,330 - CCNA_03835 0.54 -0.9
4,001,486 + CCNA_03835 0.67 -0.2
4,001,494 - CCNA_03835 0.67 -0.0
4,001,673 - CCNA_03835 0.82 -0.0
4,001,673 - CCNA_03835 0.82 +0.2
4,001,934 + -0.2
4,001,934 + -1.6
4,001,934 + -2.6
4,001,934 + -1.0
4,001,934 + -0.6
4,001,934 + -1.5
4,001,934 + +0.8
4,001,942 - +0.3
4,001,942 - +0.2
4,001,942 - +0.1
4,001,942 - +0.3
4,001,942 - +0.3
4,001,942 - +0.2
4,001,958 + +0.3
4,002,459 + -0.6
4,002,482 - -1.1
4,002,509 + +1.6
4,002,511 - +1.1
4,002,540 + +0.8
4,002,548 - +0.8
4,003,044 + +0.5
4,003,044 + -0.8
4,003,044 + -1.0
4,003,044 + -1.3
4,003,044 + -0.3
4,003,052 - -0.3
4,003,052 - +0.3
4,003,083 - -0.2
4,003,100 - -1.0
4,003,105 - -1.7
4,003,105 - -0.8
4,003,157 + -0.2
4,003,157 + -0.4
4,003,157 + -0.4
4,003,165 - -0.7
4,003,165 - -0.2
4,003,165 - +0.2
4,003,174 + -0.2
4,003,200 - +0.9
4,003,207 + -0.0
4,003,233 - +0.1
4,003,235 + -0.6
4,003,241 - -0.7
4,003,243 - -0.1
4,003,243 - +0.1
4,003,253 - +0.4
4,003,265 + CCNA_03838 0.11 -0.1
4,003,273 - CCNA_03838 0.11 -0.1
4,003,372 + CCNA_03838 0.21 -0.4
4,003,372 + CCNA_03838 0.21 +0.7
4,003,372 + CCNA_03838 0.21 +0.2
4,003,373 + CCNA_03838 0.21 +0.1
4,003,380 - CCNA_03838 0.22 +0.1
4,003,380 - CCNA_03838 0.22 +0.3
4,003,380 - CCNA_03838 0.22 +0.2
4,003,381 - CCNA_03838 0.22 -0.6
4,003,428 + CCNA_03838 0.27 +0.3
4,003,436 - CCNA_03838 0.28 -0.9
4,003,467 - CCNA_03838 0.31 -0.0

Or see this region's nucleotide sequence