Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03835 and CCNA_03836 are separated by 70 nucleotides CCNA_03836 and CCNA_03837 are separated by 70 nucleotides CCNA_03837 and CCNA_03838 are separated by 72 nucleotides
CCNA_03835: CCNA_03835 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 4,000,678 to 4,001,889
_03835
CCNA_03836: CCNA_03836 - 3-hydroxydecanoyl-(acyl-carrier-protein) dehydratase, at 4,001,960 to 4,002,472
_03836
CCNA_03837: CCNA_03837 - bacterial SH3 domain protein, at 4,002,543 to 4,003,088
_03837
CCNA_03838: CCNA_03838 - gluconate 2-dehydrogenase/glyoxylate reductase/hydroxypyruvate reductase, at 4,003,161 to 4,004,147
_03838
Position (kb)
4001
4002
4003 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4000.994 kb on - strand, within CCNA_03835 at 4001.127 kb on - strand, within CCNA_03835 at 4001.132 kb on + strand, within CCNA_03835 at 4001.250 kb on - strand, within CCNA_03835 at 4001.266 kb on - strand, within CCNA_03835 at 4001.314 kb on + strand, within CCNA_03835 at 4001.330 kb on - strand, within CCNA_03835 at 4001.486 kb on + strand, within CCNA_03835 at 4001.494 kb on - strand, within CCNA_03835 at 4001.673 kb on - strand, within CCNA_03835 at 4001.673 kb on - strand, within CCNA_03835 at 4001.934 kb on + strand at 4001.934 kb on + strand at 4001.934 kb on + strand at 4001.934 kb on + strand at 4001.934 kb on + strand at 4001.934 kb on + strand at 4001.934 kb on + strand at 4001.942 kb on - strand at 4001.942 kb on - strand at 4001.942 kb on - strand at 4001.942 kb on - strand at 4001.942 kb on - strand at 4001.942 kb on - strand at 4001.958 kb on + strand at 4002.459 kb on + strand at 4002.482 kb on - strand at 4002.509 kb on + strand at 4002.511 kb on - strand at 4002.540 kb on + strand at 4002.548 kb on - strand at 4003.044 kb on + strand at 4003.044 kb on + strand at 4003.044 kb on + strand at 4003.044 kb on + strand at 4003.044 kb on + strand at 4003.052 kb on - strand at 4003.052 kb on - strand at 4003.083 kb on - strand at 4003.100 kb on - strand at 4003.105 kb on - strand at 4003.105 kb on - strand at 4003.157 kb on + strand at 4003.157 kb on + strand at 4003.157 kb on + strand at 4003.165 kb on - strand at 4003.165 kb on - strand at 4003.165 kb on - strand at 4003.174 kb on + strand at 4003.200 kb on - strand at 4003.207 kb on + strand at 4003.233 kb on - strand at 4003.235 kb on + strand at 4003.241 kb on - strand at 4003.243 kb on - strand at 4003.243 kb on - strand at 4003.253 kb on - strand at 4003.265 kb on + strand, within CCNA_03838 at 4003.273 kb on - strand, within CCNA_03838 at 4003.372 kb on + strand, within CCNA_03838 at 4003.372 kb on + strand, within CCNA_03838 at 4003.372 kb on + strand, within CCNA_03838 at 4003.373 kb on + strand, within CCNA_03838 at 4003.380 kb on - strand, within CCNA_03838 at 4003.380 kb on - strand, within CCNA_03838 at 4003.380 kb on - strand, within CCNA_03838 at 4003.381 kb on - strand, within CCNA_03838 at 4003.428 kb on + strand, within CCNA_03838 at 4003.436 kb on - strand, within CCNA_03838 at 4003.467 kb on - strand, within CCNA_03838
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 4,000,994 - CCNA_03835 0.26 -0.4 4,001,127 - CCNA_03835 0.37 -0.0 4,001,132 + CCNA_03835 0.37 +0.6 4,001,250 - CCNA_03835 0.47 +0.6 4,001,266 - CCNA_03835 0.49 -0.0 4,001,314 + CCNA_03835 0.52 +2.0 4,001,330 - CCNA_03835 0.54 -0.9 4,001,486 + CCNA_03835 0.67 -0.2 4,001,494 - CCNA_03835 0.67 -0.0 4,001,673 - CCNA_03835 0.82 -0.0 4,001,673 - CCNA_03835 0.82 +0.2 4,001,934 + -0.2 4,001,934 + -1.6 4,001,934 + -2.6 4,001,934 + -1.0 4,001,934 + -0.6 4,001,934 + -1.5 4,001,934 + +0.8 4,001,942 - +0.3 4,001,942 - +0.2 4,001,942 - +0.1 4,001,942 - +0.3 4,001,942 - +0.3 4,001,942 - +0.2 4,001,958 + +0.3 4,002,459 + -0.6 4,002,482 - -1.1 4,002,509 + +1.6 4,002,511 - +1.1 4,002,540 + +0.8 4,002,548 - +0.8 4,003,044 + +0.5 4,003,044 + -0.8 4,003,044 + -1.0 4,003,044 + -1.3 4,003,044 + -0.3 4,003,052 - -0.3 4,003,052 - +0.3 4,003,083 - -0.2 4,003,100 - -1.0 4,003,105 - -1.7 4,003,105 - -0.8 4,003,157 + -0.2 4,003,157 + -0.4 4,003,157 + -0.4 4,003,165 - -0.7 4,003,165 - -0.2 4,003,165 - +0.2 4,003,174 + -0.2 4,003,200 - +0.9 4,003,207 + -0.0 4,003,233 - +0.1 4,003,235 + -0.6 4,003,241 - -0.7 4,003,243 - -0.1 4,003,243 - +0.1 4,003,253 - +0.4 4,003,265 + CCNA_03838 0.11 -0.1 4,003,273 - CCNA_03838 0.11 -0.1 4,003,372 + CCNA_03838 0.21 -0.4 4,003,372 + CCNA_03838 0.21 +0.7 4,003,372 + CCNA_03838 0.21 +0.2 4,003,373 + CCNA_03838 0.21 +0.1 4,003,380 - CCNA_03838 0.22 +0.1 4,003,380 - CCNA_03838 0.22 +0.3 4,003,380 - CCNA_03838 0.22 +0.2 4,003,381 - CCNA_03838 0.22 -0.6 4,003,428 + CCNA_03838 0.27 +0.3 4,003,436 - CCNA_03838 0.28 -0.9 4,003,467 - CCNA_03838 0.31 -0.0
Or see this region's nucleotide sequence