Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03834 and CCNA_03835 are separated by 12 nucleotides CCNA_03835 and CCNA_03836 are separated by 70 nucleotides CCNA_03836 and CCNA_03837 are separated by 70 nucleotides
CCNA_03834: CCNA_03834 - tetratricopeptide repeat family protein, at 3,998,875 to 4,000,665
_03834
CCNA_03835: CCNA_03835 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 4,000,678 to 4,001,889
_03835
CCNA_03836: CCNA_03836 - 3-hydroxydecanoyl-(acyl-carrier-protein) dehydratase, at 4,001,960 to 4,002,472
_03836
CCNA_03837: CCNA_03837 - bacterial SH3 domain protein, at 4,002,543 to 4,003,088
_03837
Position (kb)
4000
4001
4002 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3999.691 kb on + strand, within CCNA_03834 at 3999.767 kb on + strand, within CCNA_03834 at 3999.817 kb on - strand, within CCNA_03834 at 3999.837 kb on - strand, within CCNA_03834 at 3999.847 kb on + strand, within CCNA_03834 at 3999.854 kb on + strand, within CCNA_03834 at 3999.855 kb on - strand, within CCNA_03834 at 3999.855 kb on - strand, within CCNA_03834 at 3999.900 kb on + strand, within CCNA_03834 at 3999.920 kb on + strand, within CCNA_03834 at 3999.976 kb on - strand, within CCNA_03834 at 3999.995 kb on + strand, within CCNA_03834 at 3999.995 kb on - strand, within CCNA_03834 at 3999.995 kb on - strand, within CCNA_03834 at 4000.002 kb on + strand, within CCNA_03834 at 4000.008 kb on + strand, within CCNA_03834 at 4000.022 kb on + strand, within CCNA_03834 at 4000.025 kb on - strand, within CCNA_03834 at 4000.073 kb on - strand, within CCNA_03834 at 4000.076 kb on + strand, within CCNA_03834 at 4000.076 kb on + strand, within CCNA_03834 at 4000.084 kb on - strand, within CCNA_03834 at 4000.084 kb on - strand, within CCNA_03834 at 4000.084 kb on - strand, within CCNA_03834 at 4000.084 kb on - strand, within CCNA_03834 at 4000.084 kb on - strand, within CCNA_03834 at 4000.090 kb on + strand, within CCNA_03834 at 4000.090 kb on + strand, within CCNA_03834 at 4000.097 kb on + strand, within CCNA_03834 at 4000.098 kb on - strand, within CCNA_03834 at 4000.098 kb on - strand, within CCNA_03834 at 4000.120 kb on + strand, within CCNA_03834 at 4000.129 kb on - strand, within CCNA_03834 at 4000.144 kb on - strand, within CCNA_03834 at 4000.146 kb on + strand, within CCNA_03834 at 4000.146 kb on + strand, within CCNA_03834 at 4000.183 kb on - strand, within CCNA_03834 at 4000.195 kb on - strand, within CCNA_03834 at 4000.213 kb on - strand, within CCNA_03834 at 4000.239 kb on - strand, within CCNA_03834 at 4000.248 kb on + strand, within CCNA_03834 at 4000.286 kb on + strand, within CCNA_03834 at 4000.291 kb on + strand, within CCNA_03834 at 4000.349 kb on + strand, within CCNA_03834 at 4000.423 kb on + strand, within CCNA_03834 at 4000.423 kb on + strand, within CCNA_03834 at 4000.426 kb on - strand, within CCNA_03834 at 4000.432 kb on + strand, within CCNA_03834 at 4000.440 kb on - strand, within CCNA_03834 at 4000.453 kb on - strand, within CCNA_03834 at 4000.461 kb on + strand, within CCNA_03834 at 4000.483 kb on - strand, within CCNA_03834 at 4000.483 kb on - strand, within CCNA_03834 at 4000.484 kb on - strand, within CCNA_03834 at 4000.491 kb on - strand at 4000.491 kb on - strand at 4000.530 kb on + strand at 4000.530 kb on + strand at 4000.538 kb on - strand at 4000.552 kb on - strand at 4000.570 kb on + strand at 4000.578 kb on - strand at 4000.585 kb on + strand at 4000.609 kb on + strand at 4000.636 kb on - strand at 4000.647 kb on - strand at 4000.804 kb on - strand, within CCNA_03835 at 4000.819 kb on - strand, within CCNA_03835 at 4000.994 kb on - strand, within CCNA_03835 at 4001.127 kb on - strand, within CCNA_03835 at 4001.132 kb on + strand, within CCNA_03835 at 4001.250 kb on - strand, within CCNA_03835 at 4001.266 kb on - strand, within CCNA_03835 at 4001.314 kb on + strand, within CCNA_03835 at 4001.330 kb on - strand, within CCNA_03835 at 4001.486 kb on + strand, within CCNA_03835 at 4001.494 kb on - strand, within CCNA_03835 at 4001.673 kb on - strand, within CCNA_03835 at 4001.673 kb on - strand, within CCNA_03835 at 4001.934 kb on + strand at 4001.934 kb on + strand at 4001.934 kb on + strand at 4001.934 kb on + strand at 4001.934 kb on + strand at 4001.934 kb on + strand at 4001.934 kb on + strand at 4001.942 kb on - strand at 4001.942 kb on - strand at 4001.942 kb on - strand at 4001.942 kb on - strand at 4001.942 kb on - strand at 4001.942 kb on - strand at 4001.958 kb on + strand at 4002.459 kb on + strand at 4002.482 kb on - strand at 4002.509 kb on + strand at 4002.511 kb on - strand at 4002.540 kb on + strand at 4002.548 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,999,691 + CCNA_03834 0.46 +0.6 3,999,767 + CCNA_03834 0.50 -0.3 3,999,817 - CCNA_03834 0.53 -0.0 3,999,837 - CCNA_03834 0.54 -0.3 3,999,847 + CCNA_03834 0.54 -0.1 3,999,854 + CCNA_03834 0.55 -0.0 3,999,855 - CCNA_03834 0.55 -1.9 3,999,855 - CCNA_03834 0.55 +0.4 3,999,900 + CCNA_03834 0.57 +0.7 3,999,920 + CCNA_03834 0.58 +0.1 3,999,976 - CCNA_03834 0.61 +0.2 3,999,995 + CCNA_03834 0.63 -1.2 3,999,995 - CCNA_03834 0.63 +0.1 3,999,995 - CCNA_03834 0.63 +0.1 4,000,002 + CCNA_03834 0.63 +0.1 4,000,008 + CCNA_03834 0.63 +0.0 4,000,022 + CCNA_03834 0.64 -0.0 4,000,025 - CCNA_03834 0.64 -0.4 4,000,073 - CCNA_03834 0.67 +2.0 4,000,076 + CCNA_03834 0.67 -0.5 4,000,076 + CCNA_03834 0.67 -0.0 4,000,084 - CCNA_03834 0.68 +0.9 4,000,084 - CCNA_03834 0.68 +2.6 4,000,084 - CCNA_03834 0.68 -0.8 4,000,084 - CCNA_03834 0.68 -0.2 4,000,084 - CCNA_03834 0.68 -0.0 4,000,090 + CCNA_03834 0.68 +0.9 4,000,090 + CCNA_03834 0.68 +0.1 4,000,097 + CCNA_03834 0.68 +0.1 4,000,098 - CCNA_03834 0.68 -2.0 4,000,098 - CCNA_03834 0.68 -0.5 4,000,120 + CCNA_03834 0.70 +0.4 4,000,129 - CCNA_03834 0.70 +0.6 4,000,144 - CCNA_03834 0.71 +0.2 4,000,146 + CCNA_03834 0.71 +0.6 4,000,146 + CCNA_03834 0.71 -0.8 4,000,183 - CCNA_03834 0.73 -0.3 4,000,195 - CCNA_03834 0.74 +0.4 4,000,213 - CCNA_03834 0.75 +0.2 4,000,239 - CCNA_03834 0.76 -0.2 4,000,248 + CCNA_03834 0.77 +0.1 4,000,286 + CCNA_03834 0.79 -0.5 4,000,291 + CCNA_03834 0.79 +0.5 4,000,349 + CCNA_03834 0.82 -0.1 4,000,423 + CCNA_03834 0.86 +0.7 4,000,423 + CCNA_03834 0.86 +0.3 4,000,426 - CCNA_03834 0.87 -0.6 4,000,432 + CCNA_03834 0.87 +0.2 4,000,440 - CCNA_03834 0.87 -0.2 4,000,453 - CCNA_03834 0.88 -0.9 4,000,461 + CCNA_03834 0.89 -0.1 4,000,483 - CCNA_03834 0.90 +0.1 4,000,483 - CCNA_03834 0.90 +0.5 4,000,484 - CCNA_03834 0.90 +0.6 4,000,491 - +0.6 4,000,491 - +0.4 4,000,530 + -0.4 4,000,530 + +0.4 4,000,538 - +0.7 4,000,552 - -0.1 4,000,570 + -0.2 4,000,578 - +0.1 4,000,585 + +0.1 4,000,609 + +0.3 4,000,636 - +0.1 4,000,647 - -0.7 4,000,804 - CCNA_03835 0.10 -0.4 4,000,819 - CCNA_03835 0.12 -1.2 4,000,994 - CCNA_03835 0.26 -0.4 4,001,127 - CCNA_03835 0.37 -0.0 4,001,132 + CCNA_03835 0.37 +0.6 4,001,250 - CCNA_03835 0.47 +0.6 4,001,266 - CCNA_03835 0.49 -0.0 4,001,314 + CCNA_03835 0.52 +2.0 4,001,330 - CCNA_03835 0.54 -0.9 4,001,486 + CCNA_03835 0.67 -0.2 4,001,494 - CCNA_03835 0.67 -0.0 4,001,673 - CCNA_03835 0.82 -0.0 4,001,673 - CCNA_03835 0.82 +0.2 4,001,934 + -0.2 4,001,934 + -1.6 4,001,934 + -2.6 4,001,934 + -1.0 4,001,934 + -0.6 4,001,934 + -1.5 4,001,934 + +0.8 4,001,942 - +0.3 4,001,942 - +0.2 4,001,942 - +0.1 4,001,942 - +0.3 4,001,942 - +0.3 4,001,942 - +0.2 4,001,958 + +0.3 4,002,459 + -0.6 4,002,482 - -1.1 4,002,509 + +1.6 4,002,511 - +1.1 4,002,540 + +0.8 4,002,548 - +0.8
Or see this region's nucleotide sequence