Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03831 and CCNA_03832 are separated by 16 nucleotides CCNA_03832 and CCNA_03833 are separated by 17 nucleotides CCNA_03833 and CCNA_03834 are separated by 65 nucleotides
CCNA_03831: CCNA_03831 - major facilitator superfamily transporter, at 3,995,750 to 3,997,351
_03831
CCNA_03832: CCNA_03832 - TetR-family transcriptional regulator, at 3,997,368 to 3,997,976
_03832
CCNA_03833: CCNA_03833 - enoyl-(acyl-carrier protein) reductase FabI, at 3,997,994 to 3,998,809
_03833
CCNA_03834: CCNA_03834 - tetratricopeptide repeat family protein, at 3,998,875 to 4,000,665
_03834
Position (kb)
3997
3998 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3996.399 kb on - strand, within CCNA_03831 at 3996.467 kb on + strand, within CCNA_03831 at 3996.468 kb on + strand, within CCNA_03831 at 3996.473 kb on + strand, within CCNA_03831 at 3996.476 kb on - strand, within CCNA_03831 at 3996.559 kb on + strand, within CCNA_03831 at 3996.620 kb on + strand, within CCNA_03831 at 3996.628 kb on - strand, within CCNA_03831 at 3996.642 kb on + strand, within CCNA_03831 at 3996.645 kb on - strand, within CCNA_03831 at 3996.645 kb on - strand, within CCNA_03831 at 3996.679 kb on + strand, within CCNA_03831 at 3996.718 kb on + strand, within CCNA_03831 at 3996.726 kb on - strand, within CCNA_03831 at 3996.729 kb on + strand, within CCNA_03831 at 3996.730 kb on + strand, within CCNA_03831 at 3996.842 kb on - strand, within CCNA_03831 at 3996.844 kb on + strand, within CCNA_03831 at 3996.851 kb on + strand, within CCNA_03831 at 3996.868 kb on + strand, within CCNA_03831 at 3996.868 kb on + strand, within CCNA_03831 at 3996.884 kb on - strand, within CCNA_03831 at 3996.901 kb on + strand, within CCNA_03831 at 3996.987 kb on - strand, within CCNA_03831 at 3996.990 kb on + strand, within CCNA_03831 at 3997.064 kb on - strand, within CCNA_03831 at 3997.103 kb on - strand, within CCNA_03831 at 3997.106 kb on + strand, within CCNA_03831 at 3997.106 kb on + strand, within CCNA_03831 at 3997.114 kb on - strand, within CCNA_03831 at 3997.251 kb on + strand at 3997.259 kb on - strand at 3997.312 kb on + strand at 3997.312 kb on + strand at 3997.320 kb on - strand at 3997.360 kb on - strand at 3997.378 kb on + strand at 3997.386 kb on - strand at 3997.386 kb on - strand at 3997.416 kb on - strand at 3997.483 kb on + strand, within CCNA_03832 at 3997.492 kb on + strand, within CCNA_03832 at 3997.500 kb on - strand, within CCNA_03832 at 3997.514 kb on - strand, within CCNA_03832 at 3997.538 kb on + strand, within CCNA_03832 at 3997.538 kb on + strand, within CCNA_03832 at 3997.629 kb on + strand, within CCNA_03832 at 3997.797 kb on + strand, within CCNA_03832 at 3997.805 kb on - strand, within CCNA_03832 at 3997.884 kb on + strand, within CCNA_03832 at 3997.892 kb on - strand, within CCNA_03832 at 3997.941 kb on - strand at 3997.958 kb on - strand at 3997.961 kb on + strand at 3997.961 kb on + strand at 3997.976 kb on + strand at 3997.986 kb on + strand at 3997.991 kb on + strand at 3997.992 kb on + strand at 3998.000 kb on - strand at 3998.000 kb on - strand at 3998.831 kb on + strand at 3998.873 kb on + strand at 3998.881 kb on - strand at 3998.901 kb on - strand at 3998.902 kb on - strand at 3998.948 kb on - strand at 3998.969 kb on - strand at 3998.969 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,996,399 - CCNA_03831 0.41 +0.2 3,996,467 + CCNA_03831 0.45 -1.2 3,996,468 + CCNA_03831 0.45 +1.3 3,996,473 + CCNA_03831 0.45 +0.4 3,996,476 - CCNA_03831 0.45 -1.0 3,996,559 + CCNA_03831 0.50 -1.2 3,996,620 + CCNA_03831 0.54 -0.1 3,996,628 - CCNA_03831 0.55 -0.9 3,996,642 + CCNA_03831 0.56 -0.4 3,996,645 - CCNA_03831 0.56 +0.2 3,996,645 - CCNA_03831 0.56 -1.8 3,996,679 + CCNA_03831 0.58 +0.4 3,996,718 + CCNA_03831 0.60 +0.4 3,996,726 - CCNA_03831 0.61 -0.5 3,996,729 + CCNA_03831 0.61 -0.4 3,996,730 + CCNA_03831 0.61 +0.7 3,996,842 - CCNA_03831 0.68 -0.4 3,996,844 + CCNA_03831 0.68 +0.2 3,996,851 + CCNA_03831 0.69 -0.1 3,996,868 + CCNA_03831 0.70 -0.4 3,996,868 + CCNA_03831 0.70 -0.7 3,996,884 - CCNA_03831 0.71 +0.3 3,996,901 + CCNA_03831 0.72 +0.5 3,996,987 - CCNA_03831 0.77 -0.8 3,996,990 + CCNA_03831 0.77 -0.4 3,997,064 - CCNA_03831 0.82 +1.0 3,997,103 - CCNA_03831 0.84 +0.1 3,997,106 + CCNA_03831 0.85 +0.1 3,997,106 + CCNA_03831 0.85 -1.4 3,997,114 - CCNA_03831 0.85 -1.5 3,997,251 + +0.5 3,997,259 - +0.1 3,997,312 + +1.9 3,997,312 + +0.2 3,997,320 - +0.1 3,997,360 - -0.4 3,997,378 + -0.1 3,997,386 - +0.7 3,997,386 - -0.1 3,997,416 - -0.3 3,997,483 + CCNA_03832 0.19 -1.6 3,997,492 + CCNA_03832 0.20 +0.1 3,997,500 - CCNA_03832 0.22 +1.8 3,997,514 - CCNA_03832 0.24 -1.4 3,997,538 + CCNA_03832 0.28 -0.2 3,997,538 + CCNA_03832 0.28 -0.0 3,997,629 + CCNA_03832 0.43 -0.3 3,997,797 + CCNA_03832 0.70 +0.1 3,997,805 - CCNA_03832 0.72 -0.3 3,997,884 + CCNA_03832 0.85 +0.3 3,997,892 - CCNA_03832 0.86 -0.9 3,997,941 - +0.2 3,997,958 - -0.1 3,997,961 + -0.1 3,997,961 + +0.3 3,997,976 + +0.3 3,997,986 + -0.0 3,997,991 + -0.6 3,997,992 + -0.6 3,998,000 - -0.2 3,998,000 - -0.0 3,998,831 + -0.5 3,998,873 + +0.4 3,998,881 - -0.8 3,998,901 - -0.3 3,998,902 - -0.4 3,998,948 - +0.4 3,998,969 - -0.5 3,998,969 - +0.6
Or see this region's nucleotide sequence