Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03781 and CCNA_03782 are separated by 183 nucleotides CCNA_03782 and CCNA_03783 overlap by 4 nucleotides CCNA_03783 and CCNA_03784 are separated by 57 nucleotides
CCNA_03781: CCNA_03781 - aconitate hydratase, at 3,947,320 to 3,950,007
_03781
CCNA_03782: CCNA_03782 - cytochrome c biogenesis ATP-binding export protein CcmA, at 3,950,191 to 3,950,805
_03782
CCNA_03783: CCNA_03783 - cytochrome c biogenesis ABC transporter permease component CcmB, at 3,950,802 to 3,951,467
_03783
CCNA_03784: CCNA_03784 - hypothetical protein, at 3,951,525 to 3,952,418
_03784
Position (kb)
3950
3951
3952 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3950.024 kb on - strand at 3950.034 kb on - strand at 3950.191 kb on - strand at 3950.322 kb on - strand, within CCNA_03782 at 3950.477 kb on + strand, within CCNA_03782 at 3950.482 kb on - strand, within CCNA_03782 at 3950.500 kb on + strand, within CCNA_03782 at 3950.609 kb on + strand, within CCNA_03782 at 3950.614 kb on + strand, within CCNA_03782 at 3950.622 kb on - strand, within CCNA_03782 at 3950.794 kb on - strand at 3950.806 kb on - strand at 3950.806 kb on - strand at 3950.838 kb on + strand at 3950.851 kb on - strand at 3950.868 kb on + strand at 3951.037 kb on + strand, within CCNA_03783 at 3951.333 kb on + strand, within CCNA_03783 at 3951.360 kb on + strand, within CCNA_03783 at 3951.461 kb on + strand at 3951.464 kb on - strand at 3951.501 kb on - strand at 3951.515 kb on - strand at 3951.546 kb on + strand at 3951.554 kb on - strand at 3951.554 kb on - strand at 3951.560 kb on - strand at 3951.565 kb on - strand at 3951.580 kb on + strand at 3951.588 kb on - strand at 3951.632 kb on + strand, within CCNA_03784 at 3951.652 kb on - strand, within CCNA_03784 at 3951.657 kb on + strand, within CCNA_03784 at 3951.707 kb on + strand, within CCNA_03784 at 3951.707 kb on + strand, within CCNA_03784 at 3951.721 kb on + strand, within CCNA_03784 at 3951.721 kb on + strand, within CCNA_03784 at 3951.729 kb on - strand, within CCNA_03784 at 3951.729 kb on - strand, within CCNA_03784 at 3951.729 kb on - strand, within CCNA_03784 at 3951.734 kb on - strand, within CCNA_03784 at 3951.734 kb on - strand, within CCNA_03784 at 3951.765 kb on - strand, within CCNA_03784 at 3951.769 kb on - strand, within CCNA_03784 at 3951.779 kb on - strand, within CCNA_03784 at 3951.799 kb on + strand, within CCNA_03784 at 3951.861 kb on + strand, within CCNA_03784 at 3951.880 kb on + strand, within CCNA_03784 at 3951.890 kb on - strand, within CCNA_03784 at 3951.975 kb on + strand, within CCNA_03784 at 3951.978 kb on - strand, within CCNA_03784 at 3951.982 kb on + strand, within CCNA_03784 at 3951.988 kb on - strand, within CCNA_03784 at 3952.031 kb on - strand, within CCNA_03784 at 3952.071 kb on + strand, within CCNA_03784 at 3952.072 kb on + strand, within CCNA_03784 at 3952.080 kb on - strand, within CCNA_03784 at 3952.104 kb on + strand, within CCNA_03784 at 3952.116 kb on + strand, within CCNA_03784 at 3952.116 kb on + strand, within CCNA_03784 at 3952.131 kb on + strand, within CCNA_03784 at 3952.164 kb on + strand, within CCNA_03784 at 3952.172 kb on - strand, within CCNA_03784 at 3952.189 kb on - strand, within CCNA_03784 at 3952.195 kb on + strand, within CCNA_03784 at 3952.208 kb on - strand, within CCNA_03784 at 3952.208 kb on - strand, within CCNA_03784 at 3952.208 kb on - strand, within CCNA_03784 at 3952.311 kb on - strand, within CCNA_03784 at 3952.386 kb on - strand at 3952.396 kb on - strand at 3952.404 kb on + strand at 3952.467 kb on + strand at 3952.467 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,950,024 - -0.7 3,950,034 - -0.5 3,950,191 - +0.2 3,950,322 - CCNA_03782 0.21 +0.2 3,950,477 + CCNA_03782 0.47 -0.0 3,950,482 - CCNA_03782 0.47 +0.6 3,950,500 + CCNA_03782 0.50 +0.6 3,950,609 + CCNA_03782 0.68 -0.4 3,950,614 + CCNA_03782 0.69 +1.1 3,950,622 - CCNA_03782 0.70 +0.6 3,950,794 - -1.2 3,950,806 - -1.0 3,950,806 - -0.4 3,950,838 + -1.4 3,950,851 - +0.6 3,950,868 + -0.0 3,951,037 + CCNA_03783 0.35 -2.0 3,951,333 + CCNA_03783 0.80 +0.6 3,951,360 + CCNA_03783 0.84 -1.4 3,951,461 + +0.1 3,951,464 - -0.2 3,951,501 - -0.6 3,951,515 - +0.6 3,951,546 + +0.8 3,951,554 - +0.6 3,951,554 - -0.4 3,951,560 - +0.5 3,951,565 - +0.8 3,951,580 + +0.5 3,951,588 - +0.3 3,951,632 + CCNA_03784 0.12 +0.7 3,951,652 - CCNA_03784 0.14 +0.4 3,951,657 + CCNA_03784 0.15 +0.4 3,951,707 + CCNA_03784 0.20 -1.6 3,951,707 + CCNA_03784 0.20 -0.2 3,951,721 + CCNA_03784 0.22 -0.1 3,951,721 + CCNA_03784 0.22 -0.0 3,951,729 - CCNA_03784 0.23 -1.1 3,951,729 - CCNA_03784 0.23 -1.2 3,951,729 - CCNA_03784 0.23 +0.3 3,951,734 - CCNA_03784 0.23 +1.1 3,951,734 - CCNA_03784 0.23 +0.0 3,951,765 - CCNA_03784 0.27 +0.4 3,951,769 - CCNA_03784 0.27 +0.0 3,951,779 - CCNA_03784 0.28 +0.5 3,951,799 + CCNA_03784 0.31 -0.3 3,951,861 + CCNA_03784 0.38 -0.7 3,951,880 + CCNA_03784 0.40 +0.4 3,951,890 - CCNA_03784 0.41 +2.0 3,951,975 + CCNA_03784 0.50 +1.2 3,951,978 - CCNA_03784 0.51 +0.3 3,951,982 + CCNA_03784 0.51 -0.4 3,951,988 - CCNA_03784 0.52 -0.9 3,952,031 - CCNA_03784 0.57 +0.6 3,952,071 + CCNA_03784 0.61 -0.0 3,952,072 + CCNA_03784 0.61 +0.9 3,952,080 - CCNA_03784 0.62 +0.7 3,952,104 + CCNA_03784 0.65 +0.3 3,952,116 + CCNA_03784 0.66 -0.5 3,952,116 + CCNA_03784 0.66 -0.3 3,952,131 + CCNA_03784 0.68 -0.7 3,952,164 + CCNA_03784 0.71 -2.4 3,952,172 - CCNA_03784 0.72 +0.7 3,952,189 - CCNA_03784 0.74 +0.3 3,952,195 + CCNA_03784 0.75 +1.1 3,952,208 - CCNA_03784 0.76 -0.3 3,952,208 - CCNA_03784 0.76 +0.4 3,952,208 - CCNA_03784 0.76 +0.3 3,952,311 - CCNA_03784 0.88 -0.1 3,952,386 - +0.1 3,952,396 - +0.5 3,952,404 + +1.9 3,952,467 + +0.7 3,952,467 + +1.0
Or see this region's nucleotide sequence