Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03753 and CCNA_03754 overlap by 20 nucleotides CCNA_03754 and CCNA_03755 are separated by 119 nucleotides CCNA_03755 and CCNA_03756 are separated by 62 nucleotides
CCNA_03753: CCNA_03753 - iron-sulfur cluster-binding protein, at 3,922,579 to 3,923,709
_03753
CCNA_03754: CCNA_03754 - FtsZ-binding protein FzlA, at 3,923,690 to 3,924,376
_03754
CCNA_03755: CCNA_03755 - bifunctional D-glycero-D-manno-heptose-7-phosphate 1-kinase/D-glycero-D-manno-heptose-1-phosphate adenylyltransferase, at 3,924,496 to 3,925,947
_03755
CCNA_03756: CCNA_03756 - cation efflux family transporter, at 3,926,010 to 3,926,939
_03756
Position (kb)
3924
3925
3926 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3923.517 kb on + strand, within CCNA_03753 at 3923.517 kb on + strand, within CCNA_03753 at 3923.522 kb on + strand, within CCNA_03753 at 3923.525 kb on - strand, within CCNA_03753 at 3923.530 kb on - strand, within CCNA_03753 at 3923.558 kb on + strand, within CCNA_03753 at 3923.576 kb on + strand, within CCNA_03753 at 3923.597 kb on - strand at 3923.608 kb on + strand at 3924.492 kb on + strand at 3924.537 kb on - strand at 3924.582 kb on - strand at 3924.582 kb on - strand at 3924.585 kb on + strand at 3924.590 kb on + strand at 3924.592 kb on - strand at 3924.631 kb on - strand at 3924.650 kb on + strand, within CCNA_03755 at 3924.650 kb on + strand, within CCNA_03755 at 3924.658 kb on - strand, within CCNA_03755 at 3924.658 kb on - strand, within CCNA_03755 at 3924.715 kb on + strand, within CCNA_03755 at 3924.741 kb on - strand, within CCNA_03755 at 3924.741 kb on - strand, within CCNA_03755 at 3924.741 kb on - strand, within CCNA_03755 at 3924.824 kb on + strand, within CCNA_03755 at 3924.830 kb on + strand, within CCNA_03755 at 3924.832 kb on - strand, within CCNA_03755 at 3924.832 kb on - strand, within CCNA_03755 at 3924.832 kb on - strand, within CCNA_03755 at 3924.838 kb on - strand, within CCNA_03755 at 3924.838 kb on - strand, within CCNA_03755 at 3924.867 kb on + strand, within CCNA_03755 at 3924.867 kb on + strand, within CCNA_03755 at 3924.875 kb on - strand, within CCNA_03755 at 3924.875 kb on - strand, within CCNA_03755 at 3924.896 kb on + strand, within CCNA_03755 at 3924.916 kb on + strand, within CCNA_03755 at 3924.916 kb on + strand, within CCNA_03755 at 3924.936 kb on - strand, within CCNA_03755 at 3924.981 kb on - strand, within CCNA_03755 at 3925.041 kb on + strand, within CCNA_03755 at 3925.084 kb on - strand, within CCNA_03755 at 3925.110 kb on + strand, within CCNA_03755 at 3925.111 kb on + strand, within CCNA_03755 at 3925.210 kb on + strand, within CCNA_03755 at 3925.218 kb on - strand, within CCNA_03755 at 3925.218 kb on - strand, within CCNA_03755 at 3925.234 kb on + strand, within CCNA_03755 at 3925.242 kb on - strand, within CCNA_03755 at 3925.319 kb on + strand, within CCNA_03755 at 3925.354 kb on + strand, within CCNA_03755 at 3925.367 kb on - strand, within CCNA_03755 at 3925.500 kb on + strand, within CCNA_03755 at 3925.518 kb on - strand, within CCNA_03755 at 3925.614 kb on - strand, within CCNA_03755 at 3925.622 kb on + strand, within CCNA_03755 at 3925.630 kb on - strand, within CCNA_03755 at 3925.645 kb on - strand, within CCNA_03755 at 3925.663 kb on - strand, within CCNA_03755 at 3925.690 kb on - strand, within CCNA_03755 at 3925.711 kb on - strand, within CCNA_03755 at 3925.816 kb on - strand at 3925.832 kb on - strand at 3925.843 kb on - strand at 3925.921 kb on + strand at 3925.921 kb on + strand at 3925.929 kb on - strand at 3925.936 kb on + strand at 3925.942 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,923,517 + CCNA_03753 0.83 -0.8 3,923,517 + CCNA_03753 0.83 +0.6 3,923,522 + CCNA_03753 0.83 +0.2 3,923,525 - CCNA_03753 0.84 -1.0 3,923,530 - CCNA_03753 0.84 -1.1 3,923,558 + CCNA_03753 0.87 +0.7 3,923,576 + CCNA_03753 0.88 -1.6 3,923,597 - +1.2 3,923,608 + -0.6 3,924,492 + -0.0 3,924,537 - +0.2 3,924,582 - -0.4 3,924,582 - -1.0 3,924,585 + -0.0 3,924,590 + +0.6 3,924,592 - +0.2 3,924,631 - +1.0 3,924,650 + CCNA_03755 0.11 -1.8 3,924,650 + CCNA_03755 0.11 -1.3 3,924,658 - CCNA_03755 0.11 -2.1 3,924,658 - CCNA_03755 0.11 -2.7 3,924,715 + CCNA_03755 0.15 -0.2 3,924,741 - CCNA_03755 0.17 +0.6 3,924,741 - CCNA_03755 0.17 -1.1 3,924,741 - CCNA_03755 0.17 -0.6 3,924,824 + CCNA_03755 0.23 -0.2 3,924,830 + CCNA_03755 0.23 -0.8 3,924,832 - CCNA_03755 0.23 -1.9 3,924,832 - CCNA_03755 0.23 -1.0 3,924,832 - CCNA_03755 0.23 -0.6 3,924,838 - CCNA_03755 0.24 -0.8 3,924,838 - CCNA_03755 0.24 -0.0 3,924,867 + CCNA_03755 0.26 -0.6 3,924,867 + CCNA_03755 0.26 -0.6 3,924,875 - CCNA_03755 0.26 -1.3 3,924,875 - CCNA_03755 0.26 +1.4 3,924,896 + CCNA_03755 0.28 -1.3 3,924,916 + CCNA_03755 0.29 +0.2 3,924,916 + CCNA_03755 0.29 +0.6 3,924,936 - CCNA_03755 0.30 -0.0 3,924,981 - CCNA_03755 0.33 +0.2 3,925,041 + CCNA_03755 0.38 -0.2 3,925,084 - CCNA_03755 0.40 +0.2 3,925,110 + CCNA_03755 0.42 -0.1 3,925,111 + CCNA_03755 0.42 +0.6 3,925,210 + CCNA_03755 0.49 -2.4 3,925,218 - CCNA_03755 0.50 -1.5 3,925,218 - CCNA_03755 0.50 +0.2 3,925,234 + CCNA_03755 0.51 -1.5 3,925,242 - CCNA_03755 0.51 -0.4 3,925,319 + CCNA_03755 0.57 +0.2 3,925,354 + CCNA_03755 0.59 +0.2 3,925,367 - CCNA_03755 0.60 -1.8 3,925,500 + CCNA_03755 0.69 +0.1 3,925,518 - CCNA_03755 0.70 +0.6 3,925,614 - CCNA_03755 0.77 -1.5 3,925,622 + CCNA_03755 0.78 -0.6 3,925,630 - CCNA_03755 0.78 -3.0 3,925,645 - CCNA_03755 0.79 -1.0 3,925,663 - CCNA_03755 0.80 -0.2 3,925,690 - CCNA_03755 0.82 -2.0 3,925,711 - CCNA_03755 0.84 +2.1 3,925,816 - -0.0 3,925,832 - -0.6 3,925,843 - -0.8 3,925,921 + -0.0 3,925,921 + -0.7 3,925,929 - +1.0 3,925,936 + +0.6 3,925,942 + +0.4
Or see this region's nucleotide sequence