Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03730 and CCNA_03731 overlap by 4 nucleotides CCNA_03731 and CCNA_03732 are separated by 98 nucleotides CCNA_03732 and CCNA_03733 overlap by 17 nucleotides
CCNA_03730: CCNA_03730 - dTDP-4-dehydrorhamnose reductase, at 3,897,870 to 3,898,751
_03730
CCNA_03731: CCNA_03731 - histidinol phosphatase-family protein, at 3,898,748 to 3,899,293
_03731
CCNA_03732: CCNA_03732 - N-acyl-D-glucosamine 2-epimerase, at 3,899,392 to 3,900,552
_03732
CCNA_03733: CCNA_03733 - mannose-1-phosphate guanylyltransferase, at 3,900,536 to 3,901,846
_03733
Position (kb)
3899
3900
3901 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3898.402 kb on - strand, within CCNA_03730 at 3898.420 kb on - strand, within CCNA_03730 at 3898.437 kb on + strand, within CCNA_03730 at 3898.445 kb on - strand, within CCNA_03730 at 3898.445 kb on - strand, within CCNA_03730 at 3898.499 kb on - strand, within CCNA_03730 at 3898.499 kb on - strand, within CCNA_03730 at 3898.549 kb on + strand, within CCNA_03730 at 3898.557 kb on - strand, within CCNA_03730 at 3898.566 kb on - strand, within CCNA_03730 at 3898.648 kb on - strand, within CCNA_03730 at 3898.657 kb on + strand, within CCNA_03730 at 3898.661 kb on - strand, within CCNA_03730 at 3898.665 kb on - strand at 3898.719 kb on - strand at 3898.772 kb on + strand at 3898.775 kb on - strand at 3898.780 kb on - strand at 3898.780 kb on - strand at 3899.228 kb on + strand, within CCNA_03731 at 3899.234 kb on - strand, within CCNA_03731 at 3899.259 kb on + strand at 3899.267 kb on - strand at 3899.267 kb on - strand at 3899.267 kb on - strand at 3899.331 kb on + strand at 3899.337 kb on + strand at 3899.347 kb on + strand at 3899.397 kb on - strand at 3899.433 kb on + strand at 3899.469 kb on - strand at 3899.471 kb on + strand at 3899.479 kb on - strand at 3899.577 kb on + strand, within CCNA_03732 at 3899.586 kb on - strand, within CCNA_03732 at 3899.620 kb on - strand, within CCNA_03732 at 3899.649 kb on + strand, within CCNA_03732 at 3899.650 kb on + strand, within CCNA_03732 at 3899.720 kb on + strand, within CCNA_03732 at 3899.818 kb on + strand, within CCNA_03732 at 3899.825 kb on + strand, within CCNA_03732 at 3899.825 kb on + strand, within CCNA_03732 at 3899.833 kb on - strand, within CCNA_03732 at 3899.916 kb on - strand, within CCNA_03732 at 3900.026 kb on - strand, within CCNA_03732 at 3900.051 kb on - strand, within CCNA_03732 at 3900.149 kb on + strand, within CCNA_03732 at 3900.211 kb on + strand, within CCNA_03732 at 3900.224 kb on + strand, within CCNA_03732 at 3900.224 kb on + strand, within CCNA_03732 at 3900.318 kb on + strand, within CCNA_03732 at 3900.326 kb on - strand, within CCNA_03732 at 3900.365 kb on + strand, within CCNA_03732 at 3900.567 kb on + strand at 3900.581 kb on + strand at 3900.589 kb on - strand at 3900.589 kb on - strand at 3900.589 kb on - strand at 3900.621 kb on + strand at 3900.621 kb on + strand at 3900.621 kb on + strand at 3900.629 kb on - strand at 3900.682 kb on + strand, within CCNA_03733 at 3900.721 kb on + strand, within CCNA_03733 at 3900.747 kb on - strand, within CCNA_03733 at 3900.781 kb on + strand, within CCNA_03733 at 3900.794 kb on + strand, within CCNA_03733 at 3900.795 kb on + strand, within CCNA_03733 at 3900.810 kb on + strand, within CCNA_03733 at 3900.815 kb on + strand, within CCNA_03733 at 3900.818 kb on - strand, within CCNA_03733 at 3900.829 kb on - strand, within CCNA_03733 at 3900.837 kb on - strand, within CCNA_03733 at 3900.862 kb on - strand, within CCNA_03733 at 3900.932 kb on + strand, within CCNA_03733 at 3900.932 kb on - strand, within CCNA_03733 at 3900.940 kb on - strand, within CCNA_03733 at 3900.953 kb on + strand, within CCNA_03733 at 3901.043 kb on + strand, within CCNA_03733 at 3901.067 kb on + strand, within CCNA_03733 at 3901.170 kb on - strand, within CCNA_03733 at 3901.181 kb on + strand, within CCNA_03733 at 3901.183 kb on + strand, within CCNA_03733 at 3901.191 kb on - strand, within CCNA_03733 at 3901.207 kb on + strand, within CCNA_03733 at 3901.229 kb on + strand, within CCNA_03733 at 3901.257 kb on + strand, within CCNA_03733 at 3901.273 kb on - strand, within CCNA_03733 at 3901.273 kb on - strand, within CCNA_03733 at 3901.273 kb on - strand, within CCNA_03733 at 3901.317 kb on - strand, within CCNA_03733 at 3901.325 kb on - strand, within CCNA_03733 at 3901.328 kb on + strand, within CCNA_03733 at 3901.352 kb on + strand, within CCNA_03733 at 3901.416 kb on - strand, within CCNA_03733 at 3901.428 kb on + strand, within CCNA_03733 at 3901.436 kb on - strand, within CCNA_03733 at 3901.487 kb on - strand, within CCNA_03733 at 3901.487 kb on - strand, within CCNA_03733 at 3901.535 kb on + strand, within CCNA_03733
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,898,402 - CCNA_03730 0.60 +0.0 3,898,420 - CCNA_03730 0.62 +0.1 3,898,437 + CCNA_03730 0.64 -0.3 3,898,445 - CCNA_03730 0.65 -0.4 3,898,445 - CCNA_03730 0.65 +1.6 3,898,499 - CCNA_03730 0.71 -0.3 3,898,499 - CCNA_03730 0.71 +0.4 3,898,549 + CCNA_03730 0.77 +0.4 3,898,557 - CCNA_03730 0.78 -0.2 3,898,566 - CCNA_03730 0.79 -0.2 3,898,648 - CCNA_03730 0.88 +0.5 3,898,657 + CCNA_03730 0.89 +0.0 3,898,661 - CCNA_03730 0.90 -1.3 3,898,665 - +0.1 3,898,719 - +0.2 3,898,772 + -3.1 3,898,775 - +0.5 3,898,780 - -0.8 3,898,780 - -0.3 3,899,228 + CCNA_03731 0.88 -0.0 3,899,234 - CCNA_03731 0.89 -0.2 3,899,259 + -1.3 3,899,267 - +0.9 3,899,267 - -0.6 3,899,267 - -0.3 3,899,331 + +0.0 3,899,337 + -0.2 3,899,347 + -0.7 3,899,397 - -0.6 3,899,433 + -1.3 3,899,469 - -0.9 3,899,471 + +0.1 3,899,479 - -0.4 3,899,577 + CCNA_03732 0.16 +2.1 3,899,586 - CCNA_03732 0.17 +0.6 3,899,620 - CCNA_03732 0.20 +0.2 3,899,649 + CCNA_03732 0.22 -0.6 3,899,650 + CCNA_03732 0.22 -0.4 3,899,720 + CCNA_03732 0.28 +0.2 3,899,818 + CCNA_03732 0.37 -0.8 3,899,825 + CCNA_03732 0.37 -0.4 3,899,825 + CCNA_03732 0.37 -0.6 3,899,833 - CCNA_03732 0.38 -0.4 3,899,916 - CCNA_03732 0.45 -2.3 3,900,026 - CCNA_03732 0.55 -0.2 3,900,051 - CCNA_03732 0.57 -0.0 3,900,149 + CCNA_03732 0.65 +0.2 3,900,211 + CCNA_03732 0.71 -1.3 3,900,224 + CCNA_03732 0.72 -1.1 3,900,224 + CCNA_03732 0.72 +0.3 3,900,318 + CCNA_03732 0.80 +0.2 3,900,326 - CCNA_03732 0.80 -0.3 3,900,365 + CCNA_03732 0.84 -0.0 3,900,567 + -0.2 3,900,581 + +0.1 3,900,589 - +0.3 3,900,589 - -1.2 3,900,589 - -0.1 3,900,621 + +0.1 3,900,621 + -0.2 3,900,621 + -0.6 3,900,629 - -0.6 3,900,682 + CCNA_03733 0.11 +0.2 3,900,721 + CCNA_03733 0.14 -0.8 3,900,747 - CCNA_03733 0.16 +0.3 3,900,781 + CCNA_03733 0.19 -0.3 3,900,794 + CCNA_03733 0.20 -1.0 3,900,795 + CCNA_03733 0.20 -0.4 3,900,810 + CCNA_03733 0.21 -1.2 3,900,815 + CCNA_03733 0.21 -0.4 3,900,818 - CCNA_03733 0.22 +0.1 3,900,829 - CCNA_03733 0.22 +0.6 3,900,837 - CCNA_03733 0.23 -0.3 3,900,862 - CCNA_03733 0.25 -1.1 3,900,932 + CCNA_03733 0.30 -0.7 3,900,932 - CCNA_03733 0.30 -1.1 3,900,940 - CCNA_03733 0.31 +0.4 3,900,953 + CCNA_03733 0.32 +0.6 3,901,043 + CCNA_03733 0.39 -0.8 3,901,067 + CCNA_03733 0.41 -0.7 3,901,170 - CCNA_03733 0.48 +0.1 3,901,181 + CCNA_03733 0.49 -1.3 3,901,183 + CCNA_03733 0.49 -1.4 3,901,191 - CCNA_03733 0.50 -0.4 3,901,207 + CCNA_03733 0.51 -1.6 3,901,229 + CCNA_03733 0.53 -0.5 3,901,257 + CCNA_03733 0.55 +0.2 3,901,273 - CCNA_03733 0.56 -2.1 3,901,273 - CCNA_03733 0.56 -0.1 3,901,273 - CCNA_03733 0.56 +0.6 3,901,317 - CCNA_03733 0.60 -0.4 3,901,325 - CCNA_03733 0.60 -0.8 3,901,328 + CCNA_03733 0.60 +0.5 3,901,352 + CCNA_03733 0.62 +0.5 3,901,416 - CCNA_03733 0.67 -0.6 3,901,428 + CCNA_03733 0.68 +0.2 3,901,436 - CCNA_03733 0.69 +0.0 3,901,487 - CCNA_03733 0.73 -1.0 3,901,487 - CCNA_03733 0.73 -0.2 3,901,535 + CCNA_03733 0.76 +1.2
Or see this region's nucleotide sequence