Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03702 and CCNA_03703 are separated by 148 nucleotides CCNA_03703 and CCNA_03704 are separated by 114 nucleotides CCNA_03704 and CCNA_03705 are separated by 118 nucleotides CCNA_03705 and CCNA_R0089 are separated by 215 nucleotides
CCNA_03702: CCNA_03702 - SSU ribosomal protein S1P, at 3,869,691 to 3,871,400
_03702
CCNA_03703: CCNA_03703 - cytidylate kinase, at 3,871,549 to 3,872,190
_03703
CCNA_03704: CCNA_03704 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 3,872,305 to 3,873,636
_03704
CCNA_03705: CCNA_03705 - hypothetical protein, at 3,873,755 to 3,874,225
_03705
CCNA_R0089: CCNA_R0089 - tRNA-Ala, at 3,874,441 to 3,874,516
_R0089
Position (kb)
3872
3873
3874 Strain fitness (log2 ratio)
-2
-1
0
1 at 3872.186 kb on + strand at 3872.186 kb on + strand at 3872.217 kb on - strand at 3872.225 kb on + strand at 3872.226 kb on + strand at 3872.231 kb on + strand at 3872.233 kb on - strand at 3872.234 kb on - strand at 3872.234 kb on - strand at 3872.234 kb on - strand at 3872.239 kb on - strand at 3872.239 kb on - strand at 3872.253 kb on - strand at 3872.273 kb on - strand at 3872.273 kb on - strand at 3872.273 kb on - strand at 3872.281 kb on + strand at 3872.281 kb on + strand at 3872.281 kb on + strand at 3872.289 kb on - strand at 3872.301 kb on - strand at 3872.303 kb on + strand at 3872.303 kb on + strand at 3872.303 kb on + strand at 3872.303 kb on + strand at 3872.311 kb on - strand at 3872.317 kb on - strand at 3872.319 kb on + strand at 3872.325 kb on + strand at 3872.346 kb on - strand at 3873.317 kb on - strand, within CCNA_03704 at 3873.616 kb on + strand at 3873.616 kb on + strand at 3873.624 kb on - strand at 3873.650 kb on + strand at 3873.658 kb on - strand at 3873.787 kb on - strand at 3873.851 kb on + strand, within CCNA_03705 at 3873.883 kb on - strand, within CCNA_03705 at 3873.951 kb on + strand, within CCNA_03705 at 3874.109 kb on + strand, within CCNA_03705 at 3874.117 kb on - strand, within CCNA_03705 at 3874.273 kb on - strand at 3874.584 kb on - strand at 3874.584 kb on - strand at 3874.613 kb on - strand at 3874.615 kb on + strand at 3874.623 kb on - strand at 3874.623 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,872,186 + +0.1 3,872,186 + +0.6 3,872,217 - -0.1 3,872,225 + -0.3 3,872,226 + -0.0 3,872,231 + +0.9 3,872,233 - +0.1 3,872,234 - -0.4 3,872,234 - +0.2 3,872,234 - -0.3 3,872,239 - -0.3 3,872,239 - -0.2 3,872,253 - +0.6 3,872,273 - -0.3 3,872,273 - +0.6 3,872,273 - -0.0 3,872,281 + +0.2 3,872,281 + -0.3 3,872,281 + -0.2 3,872,289 - +0.8 3,872,301 - -0.2 3,872,303 + -0.1 3,872,303 + +0.6 3,872,303 + +0.4 3,872,303 + -0.2 3,872,311 - +0.4 3,872,317 - +0.7 3,872,319 + +0.2 3,872,325 + -0.1 3,872,346 - +0.2 3,873,317 - CCNA_03704 0.76 -2.1 3,873,616 + +0.2 3,873,616 + -0.3 3,873,624 - +0.7 3,873,650 + +0.2 3,873,658 - +0.7 3,873,787 - -0.3 3,873,851 + CCNA_03705 0.20 +0.2 3,873,883 - CCNA_03705 0.27 -0.0 3,873,951 + CCNA_03705 0.42 -1.8 3,874,109 + CCNA_03705 0.75 +0.5 3,874,117 - CCNA_03705 0.77 +0.7 3,874,273 - -0.0 3,874,584 - -0.5 3,874,584 - +0.1 3,874,613 - +0.6 3,874,615 + +0.1 3,874,623 - -0.6 3,874,623 - -0.5
Or see this region's nucleotide sequence