Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03700 and CCNA_03701 are separated by 81 nucleotides CCNA_03701 and CCNA_03702 are separated by 202 nucleotides CCNA_03702 and CCNA_03703 are separated by 148 nucleotides CCNA_03703 and CCNA_03704 are separated by 114 nucleotides
CCNA_03700: CCNA_03700 - large-conductance mechanosensitive channel, at 3,868,697 to 3,869,116
_03700
CCNA_03701: CCNA_03701 - integration host factor beta-subunit, at 3,869,198 to 3,869,488
_03701
CCNA_03702: CCNA_03702 - SSU ribosomal protein S1P, at 3,869,691 to 3,871,400
_03702
CCNA_03703: CCNA_03703 - cytidylate kinase, at 3,871,549 to 3,872,190
_03703
CCNA_03704: CCNA_03704 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 3,872,305 to 3,873,636
_03704
Position (kb)
3869
3870
3871
3872 Strain fitness (log2 ratio)
-1
0
1
2 at 3868.703 kb on - strand at 3868.814 kb on - strand, within CCNA_03700 at 3868.876 kb on - strand, within CCNA_03700 at 3868.946 kb on - strand, within CCNA_03700 at 3869.011 kb on + strand, within CCNA_03700 at 3869.015 kb on + strand, within CCNA_03700 at 3869.109 kb on + strand at 3869.135 kb on + strand at 3869.135 kb on + strand at 3869.136 kb on - strand at 3869.136 kb on - strand at 3869.136 kb on - strand at 3869.143 kb on - strand at 3869.168 kb on - strand at 3869.382 kb on - strand, within CCNA_03701 at 3869.503 kb on - strand at 3869.533 kb on + strand at 3869.564 kb on - strand at 3869.615 kb on - strand at 3869.657 kb on - strand at 3869.697 kb on - strand at 3869.704 kb on - strand at 3869.900 kb on + strand, within CCNA_03702 at 3870.236 kb on + strand, within CCNA_03702 at 3870.329 kb on + strand, within CCNA_03702 at 3870.337 kb on - strand, within CCNA_03702 at 3872.186 kb on + strand at 3872.186 kb on + strand at 3872.217 kb on - strand at 3872.225 kb on + strand at 3872.226 kb on + strand at 3872.231 kb on + strand at 3872.233 kb on - strand at 3872.234 kb on - strand at 3872.234 kb on - strand at 3872.234 kb on - strand at 3872.239 kb on - strand at 3872.239 kb on - strand at 3872.253 kb on - strand at 3872.273 kb on - strand at 3872.273 kb on - strand at 3872.273 kb on - strand at 3872.281 kb on + strand at 3872.281 kb on + strand at 3872.281 kb on + strand at 3872.289 kb on - strand at 3872.301 kb on - strand at 3872.303 kb on + strand at 3872.303 kb on + strand at 3872.303 kb on + strand at 3872.303 kb on + strand at 3872.311 kb on - strand at 3872.317 kb on - strand at 3872.319 kb on + strand at 3872.325 kb on + strand at 3872.346 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,868,703 - +0.4 3,868,814 - CCNA_03700 0.28 -0.0 3,868,876 - CCNA_03700 0.43 -0.4 3,868,946 - CCNA_03700 0.59 -0.5 3,869,011 + CCNA_03700 0.75 +0.3 3,869,015 + CCNA_03700 0.76 +2.0 3,869,109 + +0.8 3,869,135 + -0.4 3,869,135 + +1.8 3,869,136 - -0.3 3,869,136 - +0.4 3,869,136 - -0.7 3,869,143 - +0.3 3,869,168 - +0.6 3,869,382 - CCNA_03701 0.63 -0.5 3,869,503 - -0.4 3,869,533 + +0.6 3,869,564 - +1.3 3,869,615 - -0.0 3,869,657 - +0.4 3,869,697 - -0.6 3,869,704 - +0.0 3,869,900 + CCNA_03702 0.12 -0.3 3,870,236 + CCNA_03702 0.32 -0.0 3,870,329 + CCNA_03702 0.37 -0.7 3,870,337 - CCNA_03702 0.38 -1.1 3,872,186 + +0.1 3,872,186 + +0.6 3,872,217 - -0.1 3,872,225 + -0.3 3,872,226 + -0.0 3,872,231 + +0.9 3,872,233 - +0.1 3,872,234 - -0.4 3,872,234 - +0.2 3,872,234 - -0.3 3,872,239 - -0.3 3,872,239 - -0.2 3,872,253 - +0.6 3,872,273 - -0.3 3,872,273 - +0.6 3,872,273 - -0.0 3,872,281 + +0.2 3,872,281 + -0.3 3,872,281 + -0.2 3,872,289 - +0.8 3,872,301 - -0.2 3,872,303 + -0.1 3,872,303 + +0.6 3,872,303 + +0.4 3,872,303 + -0.2 3,872,311 - +0.4 3,872,317 - +0.7 3,872,319 + +0.2 3,872,325 + -0.1 3,872,346 - +0.2
Or see this region's nucleotide sequence