Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03656 and CCNA_03657 are separated by 12 nucleotides CCNA_03657 and CCNA_03658 are separated by 12 nucleotides CCNA_03658 and CCNA_03659 are separated by 22 nucleotides CCNA_03659 and CCNA_03660 are separated by 49 nucleotides
CCNA_03656: CCNA_03656 - acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, at 3,817,495 to 3,818,418
_03656
CCNA_03657: CCNA_03657 - tryptophan synthase alpha chain, at 3,818,431 to 3,819,258
_03657
CCNA_03658: CCNA_03658 - tryptophan synthase beta chain, at 3,819,271 to 3,820,491
_03658
CCNA_03659: CCNA_03659 - N-(5'-phosphoribosyl)anthranilate isomerase, at 3,820,514 to 3,821,173
_03659
CCNA_03660: CCNA_03660 - Usg protein, at 3,821,223 to 3,821,492
_03660
Position (kb)
3819
3820
3821 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3818.430 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.598 kb on + strand, within CCNA_03657 at 3818.790 kb on - strand, within CCNA_03657 at 3818.790 kb on - strand, within CCNA_03657 at 3818.937 kb on - strand, within CCNA_03657 at 3819.073 kb on - strand, within CCNA_03657 at 3819.108 kb on - strand, within CCNA_03657 at 3819.145 kb on - strand, within CCNA_03657 at 3819.145 kb on - strand, within CCNA_03657 at 3819.215 kb on + strand at 3819.276 kb on - strand at 3819.308 kb on - strand at 3819.361 kb on - strand at 3819.363 kb on + strand at 3819.394 kb on + strand, within CCNA_03658 at 3819.440 kb on - strand, within CCNA_03658 at 3819.452 kb on - strand, within CCNA_03658 at 3819.452 kb on - strand, within CCNA_03658 at 3819.454 kb on + strand, within CCNA_03658 at 3819.460 kb on - strand, within CCNA_03658 at 3819.522 kb on - strand, within CCNA_03658 at 3819.549 kb on - strand, within CCNA_03658 at 3819.905 kb on - strand, within CCNA_03658 at 3820.025 kb on + strand, within CCNA_03658 at 3820.062 kb on - strand, within CCNA_03658 at 3820.064 kb on + strand, within CCNA_03658 at 3820.077 kb on - strand, within CCNA_03658 at 3820.082 kb on - strand, within CCNA_03658 at 3820.082 kb on - strand, within CCNA_03658 at 3820.124 kb on - strand, within CCNA_03658 at 3820.129 kb on - strand, within CCNA_03658 at 3820.146 kb on - strand, within CCNA_03658 at 3820.262 kb on + strand, within CCNA_03658 at 3820.282 kb on - strand, within CCNA_03658 at 3820.309 kb on - strand, within CCNA_03658 at 3820.318 kb on - strand, within CCNA_03658 at 3820.319 kb on + strand, within CCNA_03658 at 3820.349 kb on + strand, within CCNA_03658 at 3820.357 kb on - strand, within CCNA_03658 at 3820.357 kb on - strand, within CCNA_03658 at 3820.369 kb on - strand, within CCNA_03658 at 3820.369 kb on - strand, within CCNA_03658 at 3820.375 kb on - strand at 3820.553 kb on + strand at 3820.561 kb on - strand at 3820.561 kb on - strand at 3820.573 kb on + strand at 3820.623 kb on - strand, within CCNA_03659 at 3820.633 kb on - strand, within CCNA_03659 at 3820.716 kb on - strand, within CCNA_03659 at 3820.739 kb on - strand, within CCNA_03659 at 3820.781 kb on + strand, within CCNA_03659 at 3820.781 kb on + strand, within CCNA_03659 at 3820.796 kb on + strand, within CCNA_03659 at 3820.796 kb on + strand, within CCNA_03659 at 3820.796 kb on + strand, within CCNA_03659 at 3820.914 kb on + strand, within CCNA_03659 at 3820.988 kb on - strand, within CCNA_03659 at 3821.102 kb on + strand, within CCNA_03659 at 3821.110 kb on - strand at 3821.112 kb on + strand at 3821.120 kb on - strand at 3821.129 kb on + strand at 3821.135 kb on - strand at 3821.145 kb on - strand at 3821.154 kb on - strand at 3821.221 kb on + strand at 3821.229 kb on - strand at 3821.229 kb on - strand at 3821.271 kb on + strand, within CCNA_03660 at 3821.271 kb on + strand, within CCNA_03660 at 3821.280 kb on + strand, within CCNA_03660 at 3821.301 kb on + strand, within CCNA_03660 at 3821.311 kb on + strand, within CCNA_03660 at 3821.313 kb on + strand, within CCNA_03660 at 3821.389 kb on + strand, within CCNA_03660 at 3821.390 kb on + strand, within CCNA_03660 at 3821.427 kb on - strand, within CCNA_03660 at 3821.458 kb on - strand, within CCNA_03660 at 3821.458 kb on - strand, within CCNA_03660 at 3821.491 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,818,430 - +0.0 3,818,470 - +0.1 3,818,470 - -2.3 3,818,470 - +0.6 3,818,470 - -0.6 3,818,470 - +1.2 3,818,470 - -0.5 3,818,470 - -0.6 3,818,470 - +0.8 3,818,470 - -0.0 3,818,470 - -0.2 3,818,470 - -0.8 3,818,470 - -0.4 3,818,470 - -0.5 3,818,470 - +0.2 3,818,470 - -0.8 3,818,470 - -0.2 3,818,470 - -0.2 3,818,598 + CCNA_03657 0.20 -0.1 3,818,790 - CCNA_03657 0.43 -0.0 3,818,790 - CCNA_03657 0.43 +0.0 3,818,937 - CCNA_03657 0.61 +0.6 3,819,073 - CCNA_03657 0.78 -0.5 3,819,108 - CCNA_03657 0.82 +1.0 3,819,145 - CCNA_03657 0.86 -0.5 3,819,145 - CCNA_03657 0.86 +0.4 3,819,215 + +2.6 3,819,276 - -0.1 3,819,308 - +0.6 3,819,361 - -0.3 3,819,363 + +0.2 3,819,394 + CCNA_03658 0.10 +0.6 3,819,440 - CCNA_03658 0.14 -0.2 3,819,452 - CCNA_03658 0.15 -0.3 3,819,452 - CCNA_03658 0.15 -0.3 3,819,454 + CCNA_03658 0.15 -0.4 3,819,460 - CCNA_03658 0.15 -0.6 3,819,522 - CCNA_03658 0.21 +0.8 3,819,549 - CCNA_03658 0.23 -0.3 3,819,905 - CCNA_03658 0.52 +0.4 3,820,025 + CCNA_03658 0.62 +0.6 3,820,062 - CCNA_03658 0.65 -1.5 3,820,064 + CCNA_03658 0.65 -0.2 3,820,077 - CCNA_03658 0.66 +0.1 3,820,082 - CCNA_03658 0.66 -0.0 3,820,082 - CCNA_03658 0.66 +1.1 3,820,124 - CCNA_03658 0.70 +0.2 3,820,129 - CCNA_03658 0.70 -1.9 3,820,146 - CCNA_03658 0.72 -0.0 3,820,262 + CCNA_03658 0.81 -1.4 3,820,282 - CCNA_03658 0.83 -0.3 3,820,309 - CCNA_03658 0.85 +0.1 3,820,318 - CCNA_03658 0.86 -0.2 3,820,319 + CCNA_03658 0.86 +0.6 3,820,349 + CCNA_03658 0.88 -0.1 3,820,357 - CCNA_03658 0.89 -0.5 3,820,357 - CCNA_03658 0.89 -1.0 3,820,369 - CCNA_03658 0.90 -1.1 3,820,369 - CCNA_03658 0.90 -0.6 3,820,375 - +0.2 3,820,553 + -0.8 3,820,561 - +0.5 3,820,561 - -0.1 3,820,573 + +0.1 3,820,623 - CCNA_03659 0.17 +0.7 3,820,633 - CCNA_03659 0.18 +1.2 3,820,716 - CCNA_03659 0.31 +0.5 3,820,739 - CCNA_03659 0.34 -0.2 3,820,781 + CCNA_03659 0.40 +0.8 3,820,781 + CCNA_03659 0.40 -0.7 3,820,796 + CCNA_03659 0.43 -0.2 3,820,796 + CCNA_03659 0.43 -0.5 3,820,796 + CCNA_03659 0.43 +0.7 3,820,914 + CCNA_03659 0.61 -0.0 3,820,988 - CCNA_03659 0.72 -0.8 3,821,102 + CCNA_03659 0.89 +0.1 3,821,110 - +0.0 3,821,112 + +1.0 3,821,120 - -0.5 3,821,129 + +1.2 3,821,135 - +0.0 3,821,145 - +0.6 3,821,154 - -0.6 3,821,221 + -0.4 3,821,229 - -1.3 3,821,229 - -0.2 3,821,271 + CCNA_03660 0.18 -1.6 3,821,271 + CCNA_03660 0.18 +0.2 3,821,280 + CCNA_03660 0.21 -0.7 3,821,301 + CCNA_03660 0.29 -0.1 3,821,311 + CCNA_03660 0.33 -0.2 3,821,313 + CCNA_03660 0.33 +0.6 3,821,389 + CCNA_03660 0.61 -0.3 3,821,390 + CCNA_03660 0.62 -0.5 3,821,427 - CCNA_03660 0.76 -0.5 3,821,458 - CCNA_03660 0.87 -0.5 3,821,458 - CCNA_03660 0.87 +0.8 3,821,491 + +0.2
Or see this region's nucleotide sequence