Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03651 and CCNA_03652 are separated by 130 nucleotides CCNA_03652 and CCNA_03653 are separated by 123 nucleotides CCNA_03653 and CCNA_03910 are separated by 212 nucleotides CCNA_03910 and CCNA_03655 are separated by 85 nucleotides
CCNA_03651: CCNA_03651 - ATP-dependent nuclease subunit B, at 3,808,728 to 3,811,718
_03651
CCNA_03652: CCNA_03652 - ATP-dependent nuclease subunit A, at 3,811,849 to 3,815,310
_03652
CCNA_03653: CCNA_03653 - thioredoxin, at 3,815,434 to 3,815,766
_03653
CCNA_03910: CCNA_03910 - hypothetical protein, at 3,815,979 to 3,816,086
_03910
CCNA_03655: CCNA_03655 - folylpolyglutamate synthase/dihydrofolate synthase, at 3,816,172 to 3,817,485
_03655
Position (kb)
3811
3812
3813
3814
3815
3816 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3811.040 kb on + strand, within CCNA_03651 at 3811.101 kb on + strand, within CCNA_03651 at 3811.209 kb on - strand, within CCNA_03651 at 3811.267 kb on + strand, within CCNA_03651 at 3811.310 kb on + strand, within CCNA_03651 at 3811.343 kb on - strand, within CCNA_03651 at 3811.458 kb on + strand at 3811.503 kb on + strand at 3811.717 kb on - strand at 3811.758 kb on - strand at 3811.821 kb on - strand at 3811.891 kb on + strand at 3811.997 kb on + strand at 3812.176 kb on - strand at 3812.539 kb on - strand, within CCNA_03652 at 3812.712 kb on - strand, within CCNA_03652 at 3812.805 kb on + strand, within CCNA_03652 at 3812.884 kb on + strand, within CCNA_03652 at 3813.316 kb on + strand, within CCNA_03652 at 3813.391 kb on - strand, within CCNA_03652 at 3813.391 kb on - strand, within CCNA_03652 at 3813.462 kb on + strand, within CCNA_03652 at 3813.532 kb on - strand, within CCNA_03652 at 3813.534 kb on + strand, within CCNA_03652 at 3813.694 kb on - strand, within CCNA_03652 at 3813.730 kb on + strand, within CCNA_03652 at 3813.911 kb on + strand, within CCNA_03652 at 3813.949 kb on + strand, within CCNA_03652 at 3813.957 kb on - strand, within CCNA_03652 at 3814.015 kb on + strand, within CCNA_03652 at 3814.023 kb on - strand, within CCNA_03652 at 3814.683 kb on + strand, within CCNA_03652 at 3814.695 kb on + strand, within CCNA_03652 at 3814.774 kb on + strand, within CCNA_03652 at 3814.774 kb on + strand, within CCNA_03652 at 3814.798 kb on + strand, within CCNA_03652 at 3814.911 kb on + strand, within CCNA_03652 at 3814.991 kb on - strand at 3814.996 kb on - strand at 3815.011 kb on + strand at 3815.027 kb on + strand at 3815.032 kb on + strand at 3815.052 kb on - strand at 3815.181 kb on + strand at 3815.196 kb on - strand at 3815.249 kb on + strand at 3815.257 kb on - strand at 3815.257 kb on - strand at 3815.257 kb on - strand at 3815.305 kb on + strand at 3815.312 kb on - strand at 3815.313 kb on - strand at 3815.336 kb on + strand at 3815.344 kb on - strand at 3815.363 kb on - strand at 3815.422 kb on - strand at 3815.819 kb on - strand at 3815.868 kb on - strand at 3815.873 kb on - strand at 3815.923 kb on + strand at 3815.923 kb on + strand at 3815.924 kb on - strand at 3815.931 kb on - strand at 3815.936 kb on - strand at 3815.975 kb on + strand at 3816.069 kb on + strand, within CCNA_03910 at 3816.070 kb on + strand, within CCNA_03910 at 3816.076 kb on + strand at 3816.084 kb on - strand at 3816.100 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,811,040 + CCNA_03651 0.77 +0.3 3,811,101 + CCNA_03651 0.79 +0.2 3,811,209 - CCNA_03651 0.83 -0.4 3,811,267 + CCNA_03651 0.85 +0.2 3,811,310 + CCNA_03651 0.86 +0.3 3,811,343 - CCNA_03651 0.87 -0.2 3,811,458 + -0.2 3,811,503 + +1.0 3,811,717 - -1.0 3,811,758 - +0.1 3,811,821 - -0.0 3,811,891 + -1.9 3,811,997 + +0.2 3,812,176 - +0.6 3,812,539 - CCNA_03652 0.20 -1.0 3,812,712 - CCNA_03652 0.25 -0.0 3,812,805 + CCNA_03652 0.28 -0.2 3,812,884 + CCNA_03652 0.30 -0.2 3,813,316 + CCNA_03652 0.42 -0.0 3,813,391 - CCNA_03652 0.45 +0.1 3,813,391 - CCNA_03652 0.45 -2.3 3,813,462 + CCNA_03652 0.47 -1.0 3,813,532 - CCNA_03652 0.49 +1.2 3,813,534 + CCNA_03652 0.49 +0.2 3,813,694 - CCNA_03652 0.53 +0.2 3,813,730 + CCNA_03652 0.54 -0.2 3,813,911 + CCNA_03652 0.60 -1.8 3,813,949 + CCNA_03652 0.61 -0.4 3,813,957 - CCNA_03652 0.61 -0.2 3,814,015 + CCNA_03652 0.63 -0.2 3,814,023 - CCNA_03652 0.63 +2.0 3,814,683 + CCNA_03652 0.82 -0.1 3,814,695 + CCNA_03652 0.82 -1.7 3,814,774 + CCNA_03652 0.84 -0.3 3,814,774 + CCNA_03652 0.84 +0.9 3,814,798 + CCNA_03652 0.85 -2.5 3,814,911 + CCNA_03652 0.88 -2.0 3,814,991 - -0.3 3,814,996 - -1.6 3,815,011 + -1.2 3,815,027 + +0.2 3,815,032 + -0.6 3,815,052 - -0.4 3,815,181 + -1.6 3,815,196 - -2.3 3,815,249 + +1.7 3,815,257 - -1.8 3,815,257 - +0.4 3,815,257 - -0.5 3,815,305 + +0.3 3,815,312 - -0.8 3,815,313 - -0.5 3,815,336 + +0.2 3,815,344 - -0.7 3,815,363 - -0.2 3,815,422 - -1.0 3,815,819 - -0.1 3,815,868 - +1.2 3,815,873 - +0.3 3,815,923 + -0.2 3,815,923 + +0.2 3,815,924 - -0.3 3,815,931 - +0.3 3,815,936 - +0.3 3,815,975 + +0.7 3,816,069 + CCNA_03910 0.83 -0.5 3,816,070 + CCNA_03910 0.84 -1.0 3,816,076 + -0.4 3,816,084 - +0.3 3,816,100 - +0.5
Or see this region's nucleotide sequence