Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03583 and CCNA_03584 are separated by 139 nucleotides CCNA_03584 and CCNA_03585 are separated by 79 nucleotides CCNA_03585 and CCNA_03586 overlap by 4 nucleotides CCNA_03586 and CCNA_03587 are separated by 59 nucleotides
CCNA_03583: CCNA_03583 - hypothetical protein, at 3,739,668 to 3,739,859
_03583
CCNA_03584: CCNA_03584 - histidine phosphotransferase ChpT, at 3,739,999 to 3,740,676
_03584
CCNA_03585: CCNA_03585 - chemotaxis receiver domain protein CheYIV, at 3,740,756 to 3,741,133
_03585
CCNA_03586: CCNA_03586 - chemotaxis protein methyltransferase, at 3,741,130 to 3,741,960
_03586
CCNA_03587: CCNA_03587 - entericidin B-like protein, at 3,742,020 to 3,742,163
_03587
Position (kb)
3740
3741
3742 Strain fitness (log2 ratio)
-2
-1
0
1 at 3739.759 kb on + strand, within CCNA_03583 at 3739.785 kb on + strand, within CCNA_03583 at 3739.786 kb on + strand, within CCNA_03583 at 3739.788 kb on - strand, within CCNA_03583 at 3739.791 kb on + strand, within CCNA_03583 at 3739.799 kb on - strand, within CCNA_03583 at 3739.811 kb on + strand, within CCNA_03583 at 3739.819 kb on - strand, within CCNA_03583 at 3739.846 kb on - strand at 3739.896 kb on - strand at 3739.950 kb on + strand at 3739.950 kb on + strand at 3739.950 kb on + strand at 3739.953 kb on - strand at 3739.958 kb on - strand at 3739.963 kb on - strand at 3739.963 kb on - strand at 3739.980 kb on - strand at 3739.985 kb on - strand at 3740.015 kb on - strand at 3740.721 kb on + strand at 3740.721 kb on + strand at 3740.728 kb on - strand at 3740.753 kb on + strand at 3740.761 kb on - strand at 3740.761 kb on - strand at 3740.761 kb on - strand at 3740.768 kb on + strand at 3740.775 kb on + strand at 3740.776 kb on - strand at 3740.776 kb on - strand at 3740.840 kb on + strand, within CCNA_03585 at 3740.848 kb on - strand, within CCNA_03585 at 3740.907 kb on + strand, within CCNA_03585 at 3740.912 kb on + strand, within CCNA_03585 at 3740.944 kb on - strand, within CCNA_03585 at 3740.999 kb on + strand, within CCNA_03585 at 3741.007 kb on - strand, within CCNA_03585 at 3741.007 kb on - strand, within CCNA_03585 at 3741.007 kb on - strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.024 kb on + strand, within CCNA_03585 at 3741.024 kb on + strand, within CCNA_03585 at 3741.032 kb on - strand, within CCNA_03585 at 3741.032 kb on - strand, within CCNA_03585 at 3741.070 kb on - strand, within CCNA_03585 at 3741.079 kb on - strand, within CCNA_03585 at 3741.081 kb on - strand, within CCNA_03585 at 3741.127 kb on + strand at 3741.150 kb on - strand at 3741.151 kb on - strand at 3741.160 kb on + strand at 3741.168 kb on - strand at 3741.199 kb on + strand at 3741.258 kb on - strand, within CCNA_03586 at 3741.259 kb on - strand, within CCNA_03586 at 3741.273 kb on + strand, within CCNA_03586 at 3741.281 kb on - strand, within CCNA_03586 at 3741.309 kb on + strand, within CCNA_03586 at 3741.309 kb on + strand, within CCNA_03586 at 3741.317 kb on - strand, within CCNA_03586 at 3741.374 kb on + strand, within CCNA_03586 at 3741.508 kb on + strand, within CCNA_03586 at 3741.528 kb on + strand, within CCNA_03586 at 3741.541 kb on + strand, within CCNA_03586 at 3741.744 kb on + strand, within CCNA_03586 at 3741.759 kb on + strand, within CCNA_03586 at 3741.793 kb on + strand, within CCNA_03586 at 3741.897 kb on - strand at 3741.934 kb on + strand at 3741.987 kb on + strand at 3741.987 kb on + strand at 3742.005 kb on + strand at 3742.011 kb on + strand at 3742.013 kb on - strand at 3742.019 kb on - strand at 3742.107 kb on - strand, within CCNA_03587
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,739,759 + CCNA_03583 0.47 +0.3 3,739,785 + CCNA_03583 0.61 -1.0 3,739,786 + CCNA_03583 0.61 -0.3 3,739,788 - CCNA_03583 0.62 +0.6 3,739,791 + CCNA_03583 0.64 -2.1 3,739,799 - CCNA_03583 0.68 -0.4 3,739,811 + CCNA_03583 0.74 -0.7 3,739,819 - CCNA_03583 0.79 -0.8 3,739,846 - -0.3 3,739,896 - +0.1 3,739,950 + -1.2 3,739,950 + +1.6 3,739,950 + -0.0 3,739,953 - -1.3 3,739,958 - -1.4 3,739,963 - -0.7 3,739,963 - -0.2 3,739,980 - -0.3 3,739,985 - +0.7 3,740,015 - +0.6 3,740,721 + +0.2 3,740,721 + +0.3 3,740,728 - +0.5 3,740,753 + -0.0 3,740,761 - +0.2 3,740,761 - -2.5 3,740,761 - +0.8 3,740,768 + -0.9 3,740,775 + +0.1 3,740,776 - -1.1 3,740,776 - -0.8 3,740,840 + CCNA_03585 0.22 +0.9 3,740,848 - CCNA_03585 0.24 +0.1 3,740,907 + CCNA_03585 0.40 +0.7 3,740,912 + CCNA_03585 0.41 +0.0 3,740,944 - CCNA_03585 0.50 -0.2 3,740,999 + CCNA_03585 0.64 -0.2 3,741,007 - CCNA_03585 0.66 -0.4 3,741,007 - CCNA_03585 0.66 -0.9 3,741,007 - CCNA_03585 0.66 +0.7 3,741,014 + CCNA_03585 0.68 -0.4 3,741,014 + CCNA_03585 0.68 +0.3 3,741,014 + CCNA_03585 0.68 -0.2 3,741,014 + CCNA_03585 0.68 +0.1 3,741,014 + CCNA_03585 0.68 +0.4 3,741,014 + CCNA_03585 0.68 +0.0 3,741,014 + CCNA_03585 0.68 -0.5 3,741,014 + CCNA_03585 0.68 -0.4 3,741,014 + CCNA_03585 0.68 -0.6 3,741,014 + CCNA_03585 0.68 -0.2 3,741,022 - CCNA_03585 0.70 -0.2 3,741,022 - CCNA_03585 0.70 +0.1 3,741,022 - CCNA_03585 0.70 -2.5 3,741,022 - CCNA_03585 0.70 +0.5 3,741,022 - CCNA_03585 0.70 -1.9 3,741,022 - CCNA_03585 0.70 +1.2 3,741,022 - CCNA_03585 0.70 -1.2 3,741,022 - CCNA_03585 0.70 -1.0 3,741,022 - CCNA_03585 0.70 +0.3 3,741,024 + CCNA_03585 0.71 -0.1 3,741,024 + CCNA_03585 0.71 +0.4 3,741,032 - CCNA_03585 0.73 -0.7 3,741,032 - CCNA_03585 0.73 +1.6 3,741,070 - CCNA_03585 0.83 -0.5 3,741,079 - CCNA_03585 0.85 -0.6 3,741,081 - CCNA_03585 0.86 +0.1 3,741,127 + -0.3 3,741,150 - +1.0 3,741,151 - +0.1 3,741,160 + -0.0 3,741,168 - -0.0 3,741,199 + -0.0 3,741,258 - CCNA_03586 0.15 +0.5 3,741,259 - CCNA_03586 0.16 -0.4 3,741,273 + CCNA_03586 0.17 -0.0 3,741,281 - CCNA_03586 0.18 +1.3 3,741,309 + CCNA_03586 0.22 -0.6 3,741,309 + CCNA_03586 0.22 -0.1 3,741,317 - CCNA_03586 0.23 +0.9 3,741,374 + CCNA_03586 0.29 +0.1 3,741,508 + CCNA_03586 0.45 +1.3 3,741,528 + CCNA_03586 0.48 +0.5 3,741,541 + CCNA_03586 0.49 +0.6 3,741,744 + CCNA_03586 0.74 +0.1 3,741,759 + CCNA_03586 0.76 +0.3 3,741,793 + CCNA_03586 0.80 +0.1 3,741,897 - -0.7 3,741,934 + +0.2 3,741,987 + -0.1 3,741,987 + +0.4 3,742,005 + +1.4 3,742,011 + -0.4 3,742,013 - -0.1 3,742,019 - +0.5 3,742,107 - CCNA_03587 0.60 +0.3
Or see this region's nucleotide sequence