Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03557 and CCNA_03558 are separated by 207 nucleotides CCNA_03558 and CCNA_03559 overlap by 1 nucleotides CCNA_03559 and CCNA_03560 overlap by 1 nucleotides CCNA_03560 and CCNA_03561 are separated by 47 nucleotides CCNA_03561 and CCNA_03562 are separated by 34 nucleotides
CCNA_03557: CCNA_03557 - hypothetical protein, at 3,713,085 to 3,713,810
_03557
CCNA_03558: CCNA_03558 - ATP synthase epsilon chain, at 3,714,018 to 3,714,278
_03558
CCNA_03559: CCNA_03559 - hypothetical protein, at 3,714,278 to 3,714,529
_03559
CCNA_03560: CCNA_03560 - ATP synthase beta chain, at 3,714,529 to 3,716,148
_03560
CCNA_03561: CCNA_03561 - ATP synthase gamma chain, at 3,716,196 to 3,717,071
_03561
CCNA_03562: CCNA_03562 - ATP synthase alpha chain, at 3,717,106 to 3,718,638
_03562
Position (kb)
3714
3715
3716
3717 Strain fitness (log2 ratio)
-1
0
1 at 3713.547 kb on - strand, within CCNA_03557 at 3713.547 kb on - strand, within CCNA_03557 at 3713.547 kb on - strand, within CCNA_03557 at 3713.578 kb on + strand, within CCNA_03557 at 3713.701 kb on + strand, within CCNA_03557 at 3713.706 kb on + strand, within CCNA_03557 at 3713.869 kb on - strand at 3713.881 kb on + strand at 3713.991 kb on - strand at 3713.991 kb on - strand at 3714.016 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,713,547 - CCNA_03557 0.64 -0.0 3,713,547 - CCNA_03557 0.64 +0.1 3,713,547 - CCNA_03557 0.64 -0.1 3,713,578 + CCNA_03557 0.68 -0.5 3,713,701 + CCNA_03557 0.85 -0.2 3,713,706 + CCNA_03557 0.86 -0.6 3,713,869 - +0.4 3,713,881 + -1.7 3,713,991 - -0.3 3,713,991 - +0.2 3,714,016 + -0.1
Or see this region's nucleotide sequence