Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03544 and CCNA_03545 are separated by 120 nucleotides CCNA_03545 and CCNA_03546 are separated by 47 nucleotides CCNA_03546 and CCNA_03547 are separated by 16 nucleotides
CCNA_03544: CCNA_03544 - nicotinate-nucleotide adenylyltransferase, at 3,701,306 to 3,701,956
_03544
CCNA_03545: CCNA_03545 - iojap protein family, at 3,702,077 to 3,702,508
_03545
CCNA_03546: CCNA_03546 - rRNA large subunit methyltransferase, at 3,702,556 to 3,703,077
_03546
CCNA_03547: CCNA_03547 - peptidoglycan-specific endopeptidase, M23 family, at 3,703,094 to 3,704,149
_03547
Position (kb)
3702
3703
3704 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3701.950 kb on + strand at 3701.955 kb on + strand at 3701.960 kb on + strand at 3702.001 kb on + strand at 3702.012 kb on + strand at 3702.031 kb on - strand at 3702.047 kb on + strand at 3702.055 kb on - strand at 3702.066 kb on + strand at 3702.075 kb on - strand at 3702.215 kb on + strand, within CCNA_03545 at 3702.539 kb on + strand at 3702.670 kb on + strand, within CCNA_03546 at 3702.670 kb on + strand, within CCNA_03546 at 3702.670 kb on + strand, within CCNA_03546 at 3702.670 kb on + strand, within CCNA_03546 at 3702.670 kb on + strand, within CCNA_03546 at 3702.670 kb on + strand, within CCNA_03546 at 3702.670 kb on + strand, within CCNA_03546 at 3702.675 kb on + strand, within CCNA_03546 at 3702.678 kb on - strand, within CCNA_03546 at 3702.697 kb on + strand, within CCNA_03546 at 3702.710 kb on + strand, within CCNA_03546 at 3702.712 kb on - strand, within CCNA_03546 at 3702.725 kb on - strand, within CCNA_03546 at 3702.764 kb on - strand, within CCNA_03546 at 3702.793 kb on + strand, within CCNA_03546 at 3702.793 kb on + strand, within CCNA_03546 at 3702.793 kb on + strand, within CCNA_03546 at 3702.793 kb on + strand, within CCNA_03546 at 3702.793 kb on + strand, within CCNA_03546 at 3702.809 kb on + strand, within CCNA_03546 at 3702.811 kb on + strand, within CCNA_03546 at 3702.817 kb on - strand, within CCNA_03546 at 3702.831 kb on + strand, within CCNA_03546 at 3702.839 kb on - strand, within CCNA_03546 at 3702.865 kb on + strand, within CCNA_03546 at 3702.886 kb on + strand, within CCNA_03546 at 3702.904 kb on - strand, within CCNA_03546 at 3702.979 kb on + strand, within CCNA_03546 at 3702.979 kb on + strand, within CCNA_03546 at 3702.979 kb on + strand, within CCNA_03546 at 3702.987 kb on - strand, within CCNA_03546 at 3703.005 kb on - strand, within CCNA_03546 at 3703.005 kb on - strand, within CCNA_03546 at 3703.010 kb on - strand, within CCNA_03546 at 3703.010 kb on - strand, within CCNA_03546 at 3703.010 kb on - strand, within CCNA_03546 at 3703.034 kb on - strand at 3703.034 kb on - strand at 3703.058 kb on + strand at 3703.058 kb on + strand at 3703.060 kb on + strand at 3703.060 kb on + strand at 3703.060 kb on + strand at 3703.060 kb on + strand at 3703.083 kb on + strand at 3703.099 kb on - strand at 3703.159 kb on - strand at 3703.266 kb on + strand, within CCNA_03547 at 3703.320 kb on + strand, within CCNA_03547 at 3703.651 kb on - strand, within CCNA_03547 at 3703.675 kb on + strand, within CCNA_03547 at 3703.710 kb on - strand, within CCNA_03547 at 3703.754 kb on + strand, within CCNA_03547 at 3703.759 kb on - strand, within CCNA_03547 at 3703.848 kb on + strand, within CCNA_03547 at 3703.940 kb on + strand, within CCNA_03547 at 3704.019 kb on + strand, within CCNA_03547 at 3704.048 kb on + strand at 3704.056 kb on + strand at 3704.057 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,701,950 + -0.3 3,701,955 + +0.6 3,701,960 + +0.2 3,702,001 + +0.1 3,702,012 + +1.4 3,702,031 - -1.1 3,702,047 + -0.4 3,702,055 - -0.0 3,702,066 + +0.2 3,702,075 - +1.6 3,702,215 + CCNA_03545 0.32 -1.5 3,702,539 + +0.6 3,702,670 + CCNA_03546 0.22 -0.6 3,702,670 + CCNA_03546 0.22 +0.3 3,702,670 + CCNA_03546 0.22 +0.2 3,702,670 + CCNA_03546 0.22 +0.5 3,702,670 + CCNA_03546 0.22 +0.3 3,702,670 + CCNA_03546 0.22 +0.2 3,702,670 + CCNA_03546 0.22 -0.3 3,702,675 + CCNA_03546 0.23 +0.1 3,702,678 - CCNA_03546 0.23 -0.6 3,702,697 + CCNA_03546 0.27 -0.4 3,702,710 + CCNA_03546 0.30 +1.6 3,702,712 - CCNA_03546 0.30 -0.0 3,702,725 - CCNA_03546 0.32 -0.4 3,702,764 - CCNA_03546 0.40 -0.7 3,702,793 + CCNA_03546 0.45 +0.2 3,702,793 + CCNA_03546 0.45 -0.2 3,702,793 + CCNA_03546 0.45 -1.2 3,702,793 + CCNA_03546 0.45 -0.5 3,702,793 + CCNA_03546 0.45 +0.8 3,702,809 + CCNA_03546 0.48 -0.5 3,702,811 + CCNA_03546 0.49 -0.0 3,702,817 - CCNA_03546 0.50 -0.0 3,702,831 + CCNA_03546 0.53 -0.1 3,702,839 - CCNA_03546 0.54 -0.5 3,702,865 + CCNA_03546 0.59 +0.3 3,702,886 + CCNA_03546 0.63 +0.2 3,702,904 - CCNA_03546 0.67 -0.2 3,702,979 + CCNA_03546 0.81 +0.7 3,702,979 + CCNA_03546 0.81 +0.3 3,702,979 + CCNA_03546 0.81 +0.3 3,702,987 - CCNA_03546 0.83 -0.1 3,703,005 - CCNA_03546 0.86 -0.2 3,703,005 - CCNA_03546 0.86 -1.0 3,703,010 - CCNA_03546 0.87 +1.9 3,703,010 - CCNA_03546 0.87 -2.3 3,703,010 - CCNA_03546 0.87 -0.2 3,703,034 - -0.5 3,703,034 - +0.5 3,703,058 + +0.8 3,703,058 + -0.3 3,703,060 + -0.1 3,703,060 + +0.3 3,703,060 + +0.3 3,703,060 + -0.1 3,703,083 + -0.9 3,703,099 - -1.6 3,703,159 - -0.0 3,703,266 + CCNA_03547 0.16 -1.0 3,703,320 + CCNA_03547 0.21 -0.4 3,703,651 - CCNA_03547 0.53 -2.5 3,703,675 + CCNA_03547 0.55 -0.4 3,703,710 - CCNA_03547 0.58 +0.1 3,703,754 + CCNA_03547 0.62 +0.3 3,703,759 - CCNA_03547 0.63 -0.7 3,703,848 + CCNA_03547 0.71 +0.9 3,703,940 + CCNA_03547 0.80 -0.6 3,704,019 + CCNA_03547 0.88 +0.1 3,704,048 + +0.7 3,704,056 + -2.2 3,704,057 + +0.8
Or see this region's nucleotide sequence