Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03414 and CCNA_03415 are separated by 118 nucleotides CCNA_03415 and CCNA_03416 are separated by 63 nucleotides
CCNA_03414: CCNA_03414 - Rubrum transdehydrogenase NAD-binding, at 3,581,213 to 3,582,355
_03414
CCNA_03415: CCNA_03415 - aa3 type cytochrome c oxidase subunit IV-related protein, at 3,582,474 to 3,582,704
_03415
CCNA_03416: CCNA_03416 - ADP-heptose:LPS heptosyltransferase, at 3,582,768 to 3,583,769
_03416
Position (kb)
3582
3583 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3581.494 kb on + strand, within CCNA_03414 at 3581.527 kb on - strand, within CCNA_03414 at 3581.537 kb on - strand, within CCNA_03414 at 3581.537 kb on - strand, within CCNA_03414 at 3581.539 kb on + strand, within CCNA_03414 at 3581.561 kb on + strand, within CCNA_03414 at 3581.569 kb on - strand, within CCNA_03414 at 3581.574 kb on - strand, within CCNA_03414 at 3581.612 kb on - strand, within CCNA_03414 at 3581.630 kb on - strand, within CCNA_03414 at 3581.679 kb on + strand, within CCNA_03414 at 3581.681 kb on + strand, within CCNA_03414 at 3581.703 kb on + strand, within CCNA_03414 at 3581.711 kb on - strand, within CCNA_03414 at 3581.724 kb on + strand, within CCNA_03414 at 3581.738 kb on - strand, within CCNA_03414 at 3581.742 kb on - strand, within CCNA_03414 at 3581.801 kb on + strand, within CCNA_03414 at 3581.832 kb on - strand, within CCNA_03414 at 3581.868 kb on + strand, within CCNA_03414 at 3581.942 kb on - strand, within CCNA_03414 at 3581.944 kb on + strand, within CCNA_03414 at 3581.961 kb on - strand, within CCNA_03414 at 3581.966 kb on - strand, within CCNA_03414 at 3582.012 kb on + strand, within CCNA_03414 at 3582.018 kb on + strand, within CCNA_03414 at 3582.018 kb on + strand, within CCNA_03414 at 3582.018 kb on + strand, within CCNA_03414 at 3582.018 kb on + strand, within CCNA_03414 at 3582.018 kb on + strand, within CCNA_03414 at 3582.018 kb on + strand, within CCNA_03414 at 3582.026 kb on - strand, within CCNA_03414 at 3582.026 kb on - strand, within CCNA_03414 at 3582.026 kb on - strand, within CCNA_03414 at 3582.026 kb on - strand, within CCNA_03414 at 3582.026 kb on - strand, within CCNA_03414 at 3582.026 kb on - strand, within CCNA_03414 at 3582.026 kb on - strand, within CCNA_03414 at 3582.052 kb on + strand, within CCNA_03414 at 3582.057 kb on + strand, within CCNA_03414 at 3582.094 kb on - strand, within CCNA_03414 at 3582.101 kb on + strand, within CCNA_03414 at 3582.135 kb on - strand, within CCNA_03414 at 3582.215 kb on + strand, within CCNA_03414 at 3582.219 kb on - strand, within CCNA_03414 at 3582.223 kb on - strand, within CCNA_03414 at 3582.223 kb on - strand, within CCNA_03414 at 3582.237 kb on + strand, within CCNA_03414 at 3582.239 kb on - strand, within CCNA_03414 at 3582.245 kb on - strand at 3582.283 kb on + strand at 3582.333 kb on - strand at 3582.362 kb on + strand at 3582.370 kb on - strand at 3582.370 kb on - strand at 3582.370 kb on - strand at 3582.384 kb on - strand at 3582.435 kb on - strand at 3582.568 kb on + strand, within CCNA_03415 at 3582.568 kb on + strand, within CCNA_03415 at 3582.591 kb on - strand, within CCNA_03415 at 3582.599 kb on + strand, within CCNA_03415 at 3582.705 kb on + strand at 3582.774 kb on - strand at 3582.824 kb on - strand at 3582.918 kb on - strand, within CCNA_03416 at 3582.961 kb on + strand, within CCNA_03416 at 3582.962 kb on - strand, within CCNA_03416 at 3582.962 kb on - strand, within CCNA_03416 at 3583.058 kb on - strand, within CCNA_03416 at 3583.107 kb on + strand, within CCNA_03416 at 3583.170 kb on + strand, within CCNA_03416 at 3583.171 kb on + strand, within CCNA_03416 at 3583.178 kb on - strand, within CCNA_03416 at 3583.228 kb on + strand, within CCNA_03416 at 3583.247 kb on + strand, within CCNA_03416 at 3583.280 kb on + strand, within CCNA_03416 at 3583.288 kb on - strand, within CCNA_03416 at 3583.295 kb on + strand, within CCNA_03416 at 3583.295 kb on + strand, within CCNA_03416 at 3583.295 kb on + strand, within CCNA_03416 at 3583.303 kb on - strand, within CCNA_03416 at 3583.303 kb on - strand, within CCNA_03416 at 3583.303 kb on - strand, within CCNA_03416 at 3583.303 kb on - strand, within CCNA_03416 at 3583.350 kb on + strand, within CCNA_03416 at 3583.357 kb on + strand, within CCNA_03416 at 3583.362 kb on + strand, within CCNA_03416 at 3583.365 kb on - strand, within CCNA_03416 at 3583.365 kb on - strand, within CCNA_03416 at 3583.365 kb on - strand, within CCNA_03416 at 3583.365 kb on - strand, within CCNA_03416 at 3583.381 kb on - strand, within CCNA_03416 at 3583.399 kb on + strand, within CCNA_03416 at 3583.404 kb on + strand, within CCNA_03416 at 3583.407 kb on - strand, within CCNA_03416 at 3583.409 kb on + strand, within CCNA_03416 at 3583.417 kb on - strand, within CCNA_03416 at 3583.417 kb on - strand, within CCNA_03416 at 3583.417 kb on - strand, within CCNA_03416 at 3583.417 kb on - strand, within CCNA_03416 at 3583.417 kb on - strand, within CCNA_03416 at 3583.424 kb on + strand, within CCNA_03416 at 3583.424 kb on + strand, within CCNA_03416 at 3583.530 kb on - strand, within CCNA_03416 at 3583.532 kb on - strand, within CCNA_03416 at 3583.543 kb on + strand, within CCNA_03416 at 3583.551 kb on - strand, within CCNA_03416 at 3583.551 kb on - strand, within CCNA_03416 at 3583.551 kb on - strand, within CCNA_03416 at 3583.551 kb on - strand, within CCNA_03416 at 3583.551 kb on - strand, within CCNA_03416 at 3583.551 kb on - strand, within CCNA_03416 at 3583.551 kb on - strand, within CCNA_03416 at 3583.551 kb on - strand, within CCNA_03416 at 3583.551 kb on - strand, within CCNA_03416 at 3583.551 kb on - strand, within CCNA_03416 at 3583.551 kb on - strand, within CCNA_03416 at 3583.555 kb on + strand, within CCNA_03416 at 3583.595 kb on + strand, within CCNA_03416 at 3583.600 kb on + strand, within CCNA_03416 at 3583.600 kb on + strand, within CCNA_03416 at 3583.600 kb on + strand, within CCNA_03416 at 3583.600 kb on + strand, within CCNA_03416 at 3583.608 kb on - strand, within CCNA_03416 at 3583.608 kb on - strand, within CCNA_03416 at 3583.608 kb on - strand, within CCNA_03416 at 3583.608 kb on - strand, within CCNA_03416 at 3583.608 kb on - strand, within CCNA_03416 at 3583.608 kb on - strand, within CCNA_03416 at 3583.608 kb on - strand, within CCNA_03416 at 3583.608 kb on - strand, within CCNA_03416 at 3583.612 kb on + strand, within CCNA_03416 at 3583.618 kb on - strand, within CCNA_03416 at 3583.646 kb on - strand, within CCNA_03416 at 3583.648 kb on + strand, within CCNA_03416 at 3583.648 kb on + strand, within CCNA_03416 at 3583.648 kb on + strand, within CCNA_03416 at 3583.648 kb on + strand, within CCNA_03416 at 3583.656 kb on - strand, within CCNA_03416 at 3583.656 kb on - strand, within CCNA_03416 at 3583.658 kb on + strand, within CCNA_03416 at 3583.704 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,581,494 + CCNA_03414 0.25 +0.3 3,581,527 - CCNA_03414 0.27 +0.4 3,581,537 - CCNA_03414 0.28 -0.3 3,581,537 - CCNA_03414 0.28 +1.0 3,581,539 + CCNA_03414 0.29 -1.7 3,581,561 + CCNA_03414 0.30 -1.1 3,581,569 - CCNA_03414 0.31 -0.8 3,581,574 - CCNA_03414 0.32 +1.4 3,581,612 - CCNA_03414 0.35 +0.9 3,581,630 - CCNA_03414 0.36 -0.4 3,581,679 + CCNA_03414 0.41 +0.3 3,581,681 + CCNA_03414 0.41 +1.9 3,581,703 + CCNA_03414 0.43 -0.2 3,581,711 - CCNA_03414 0.44 +0.9 3,581,724 + CCNA_03414 0.45 -0.3 3,581,738 - CCNA_03414 0.46 -1.0 3,581,742 - CCNA_03414 0.46 +0.0 3,581,801 + CCNA_03414 0.51 -2.0 3,581,832 - CCNA_03414 0.54 -0.6 3,581,868 + CCNA_03414 0.57 -0.3 3,581,942 - CCNA_03414 0.64 +0.8 3,581,944 + CCNA_03414 0.64 +0.2 3,581,961 - CCNA_03414 0.65 +1.3 3,581,966 - CCNA_03414 0.66 +0.6 3,582,012 + CCNA_03414 0.70 -1.7 3,582,018 + CCNA_03414 0.70 -0.7 3,582,018 + CCNA_03414 0.70 -0.3 3,582,018 + CCNA_03414 0.70 -0.4 3,582,018 + CCNA_03414 0.70 -0.5 3,582,018 + CCNA_03414 0.70 -1.2 3,582,018 + CCNA_03414 0.70 -1.5 3,582,026 - CCNA_03414 0.71 +0.2 3,582,026 - CCNA_03414 0.71 +0.4 3,582,026 - CCNA_03414 0.71 +0.1 3,582,026 - CCNA_03414 0.71 -0.0 3,582,026 - CCNA_03414 0.71 -0.5 3,582,026 - CCNA_03414 0.71 +0.6 3,582,026 - CCNA_03414 0.71 +2.0 3,582,052 + CCNA_03414 0.73 -0.4 3,582,057 + CCNA_03414 0.74 +0.7 3,582,094 - CCNA_03414 0.77 +0.2 3,582,101 + CCNA_03414 0.78 -0.4 3,582,135 - CCNA_03414 0.81 -0.2 3,582,215 + CCNA_03414 0.88 -1.8 3,582,219 - CCNA_03414 0.88 -0.2 3,582,223 - CCNA_03414 0.88 +0.5 3,582,223 - CCNA_03414 0.88 -0.2 3,582,237 + CCNA_03414 0.90 +0.5 3,582,239 - CCNA_03414 0.90 +0.4 3,582,245 - +0.6 3,582,283 + +0.1 3,582,333 - +1.2 3,582,362 + +0.6 3,582,370 - +0.3 3,582,370 - -0.1 3,582,370 - -0.1 3,582,384 - +0.1 3,582,435 - +0.2 3,582,568 + CCNA_03415 0.41 -1.4 3,582,568 + CCNA_03415 0.41 -0.9 3,582,591 - CCNA_03415 0.51 -0.2 3,582,599 + CCNA_03415 0.54 -1.8 3,582,705 + -0.4 3,582,774 - +0.3 3,582,824 - +0.5 3,582,918 - CCNA_03416 0.15 +2.2 3,582,961 + CCNA_03416 0.19 -0.6 3,582,962 - CCNA_03416 0.19 +1.0 3,582,962 - CCNA_03416 0.19 +0.0 3,583,058 - CCNA_03416 0.29 -0.2 3,583,107 + CCNA_03416 0.34 -0.9 3,583,170 + CCNA_03416 0.40 -1.5 3,583,171 + CCNA_03416 0.40 +0.8 3,583,178 - CCNA_03416 0.41 -0.6 3,583,228 + CCNA_03416 0.46 -0.4 3,583,247 + CCNA_03416 0.48 +0.3 3,583,280 + CCNA_03416 0.51 +1.1 3,583,288 - CCNA_03416 0.52 +0.0 3,583,295 + CCNA_03416 0.53 -0.4 3,583,295 + CCNA_03416 0.53 -0.3 3,583,295 + CCNA_03416 0.53 +0.1 3,583,303 - CCNA_03416 0.53 +0.3 3,583,303 - CCNA_03416 0.53 -0.9 3,583,303 - CCNA_03416 0.53 -0.6 3,583,303 - CCNA_03416 0.53 +0.3 3,583,350 + CCNA_03416 0.58 -0.4 3,583,357 + CCNA_03416 0.59 -0.3 3,583,362 + CCNA_03416 0.59 -0.9 3,583,365 - CCNA_03416 0.60 +0.2 3,583,365 - CCNA_03416 0.60 -1.2 3,583,365 - CCNA_03416 0.60 +0.1 3,583,365 - CCNA_03416 0.60 +0.3 3,583,381 - CCNA_03416 0.61 +0.3 3,583,399 + CCNA_03416 0.63 +0.7 3,583,404 + CCNA_03416 0.63 +0.4 3,583,407 - CCNA_03416 0.64 -1.5 3,583,409 + CCNA_03416 0.64 +0.7 3,583,417 - CCNA_03416 0.65 +0.1 3,583,417 - CCNA_03416 0.65 +1.1 3,583,417 - CCNA_03416 0.65 -0.8 3,583,417 - CCNA_03416 0.65 +0.2 3,583,417 - CCNA_03416 0.65 +0.1 3,583,424 + CCNA_03416 0.65 -0.3 3,583,424 + CCNA_03416 0.65 +0.1 3,583,530 - CCNA_03416 0.76 -0.1 3,583,532 - CCNA_03416 0.76 +0.2 3,583,543 + CCNA_03416 0.77 +0.2 3,583,551 - CCNA_03416 0.78 -0.0 3,583,551 - CCNA_03416 0.78 -0.5 3,583,551 - CCNA_03416 0.78 +0.2 3,583,551 - CCNA_03416 0.78 -0.4 3,583,551 - CCNA_03416 0.78 +0.1 3,583,551 - CCNA_03416 0.78 +1.2 3,583,551 - CCNA_03416 0.78 +0.0 3,583,551 - CCNA_03416 0.78 +0.0 3,583,551 - CCNA_03416 0.78 -0.4 3,583,551 - CCNA_03416 0.78 +1.2 3,583,551 - CCNA_03416 0.78 +0.7 3,583,555 + CCNA_03416 0.79 -0.1 3,583,595 + CCNA_03416 0.83 -2.9 3,583,600 + CCNA_03416 0.83 -0.8 3,583,600 + CCNA_03416 0.83 -0.9 3,583,600 + CCNA_03416 0.83 -0.3 3,583,600 + CCNA_03416 0.83 -0.7 3,583,608 - CCNA_03416 0.84 -0.0 3,583,608 - CCNA_03416 0.84 +0.0 3,583,608 - CCNA_03416 0.84 +0.5 3,583,608 - CCNA_03416 0.84 +0.1 3,583,608 - CCNA_03416 0.84 +0.2 3,583,608 - CCNA_03416 0.84 +0.8 3,583,608 - CCNA_03416 0.84 -0.1 3,583,608 - CCNA_03416 0.84 +0.6 3,583,612 + CCNA_03416 0.84 -0.5 3,583,618 - CCNA_03416 0.85 -0.5 3,583,646 - CCNA_03416 0.88 +0.2 3,583,648 + CCNA_03416 0.88 +0.5 3,583,648 + CCNA_03416 0.88 -1.8 3,583,648 + CCNA_03416 0.88 -0.9 3,583,648 + CCNA_03416 0.88 -0.3 3,583,656 - CCNA_03416 0.89 +2.2 3,583,656 - CCNA_03416 0.89 +0.2 3,583,658 + CCNA_03416 0.89 +0.3 3,583,704 - +0.7
Or see this region's nucleotide sequence