Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03335 and CCNA_03336 overlap by 10 nucleotides CCNA_03336 and CCNA_03337 are separated by 77 nucleotides CCNA_03337 and CCNA_03338 are separated by 196 nucleotides
CCNA_03335: CCNA_03335 - PP-loop family cell cycle control ATPase, at 3,516,491 to 3,517,717
_03335
CCNA_03336: CCNA_03336 - Tol system periplasmic component YbgF, at 3,517,708 to 3,518,562
_03336
CCNA_03337: CCNA_03337 - peptidoglycan-associated lipoprotein pal, at 3,518,640 to 3,519,206
_03337
CCNA_03338: CCNA_03338 - TolB protein, at 3,519,403 to 3,520,734
_03338
Position (kb)
3518
3519
3520 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3517.685 kb on + strand at 3517.693 kb on - strand at 3517.693 kb on - strand at 3517.693 kb on - strand at 3517.693 kb on - strand at 3517.703 kb on - strand at 3517.708 kb on - strand at 3517.708 kb on - strand at 3517.753 kb on + strand at 3517.756 kb on - strand at 3517.756 kb on - strand at 3517.767 kb on + strand at 3517.767 kb on + strand at 3517.780 kb on - strand at 3517.797 kb on + strand, within CCNA_03336 at 3517.807 kb on + strand, within CCNA_03336 at 3517.832 kb on + strand, within CCNA_03336 at 3517.832 kb on + strand, within CCNA_03336 at 3517.832 kb on + strand, within CCNA_03336 at 3517.832 kb on + strand, within CCNA_03336 at 3517.840 kb on - strand, within CCNA_03336 at 3517.847 kb on + strand, within CCNA_03336 at 3517.876 kb on + strand, within CCNA_03336 at 3517.925 kb on + strand, within CCNA_03336 at 3517.932 kb on - strand, within CCNA_03336 at 3518.023 kb on - strand, within CCNA_03336 at 3518.031 kb on - strand, within CCNA_03336 at 3518.128 kb on - strand, within CCNA_03336 at 3518.128 kb on - strand, within CCNA_03336 at 3518.135 kb on + strand, within CCNA_03336 at 3518.179 kb on + strand, within CCNA_03336 at 3518.249 kb on + strand, within CCNA_03336 at 3518.249 kb on + strand, within CCNA_03336 at 3518.257 kb on - strand, within CCNA_03336 at 3518.257 kb on - strand, within CCNA_03336 at 3518.257 kb on - strand, within CCNA_03336 at 3518.257 kb on - strand, within CCNA_03336 at 3518.267 kb on - strand, within CCNA_03336 at 3518.291 kb on + strand, within CCNA_03336 at 3518.344 kb on - strand, within CCNA_03336 at 3518.381 kb on - strand, within CCNA_03336 at 3518.416 kb on - strand, within CCNA_03336 at 3518.429 kb on + strand, within CCNA_03336 at 3518.535 kb on - strand at 3518.556 kb on - strand at 3518.635 kb on - strand at 3518.635 kb on - strand at 3518.635 kb on - strand at 3518.828 kb on + strand, within CCNA_03337 at 3518.834 kb on - strand, within CCNA_03337 at 3518.908 kb on - strand, within CCNA_03337 at 3518.953 kb on - strand, within CCNA_03337 at 3518.999 kb on - strand, within CCNA_03337 at 3519.004 kb on - strand, within CCNA_03337 at 3519.011 kb on + strand, within CCNA_03337 at 3519.227 kb on + strand at 3519.227 kb on + strand at 3519.227 kb on + strand at 3519.227 kb on + strand at 3519.227 kb on + strand at 3519.227 kb on + strand at 3519.227 kb on + strand at 3519.235 kb on - strand at 3519.235 kb on - strand at 3519.235 kb on - strand at 3519.235 kb on - strand at 3519.235 kb on - strand at 3519.235 kb on - strand at 3519.245 kb on - strand at 3519.252 kb on - strand at 3519.258 kb on + strand at 3519.328 kb on + strand at 3519.329 kb on + strand at 3519.375 kb on + strand at 3519.383 kb on - strand at 3519.383 kb on - strand at 3519.383 kb on - strand at 3519.395 kb on + strand at 3519.406 kb on + strand at 3519.406 kb on + strand at 3519.414 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,517,685 + -0.6 3,517,693 - -0.6 3,517,693 - +0.2 3,517,693 - +0.3 3,517,693 - -0.1 3,517,703 - +0.3 3,517,708 - -0.2 3,517,708 - +0.2 3,517,753 + +0.7 3,517,756 - -0.8 3,517,756 - +0.1 3,517,767 + -1.5 3,517,767 + +0.3 3,517,780 - -0.9 3,517,797 + CCNA_03336 0.10 -0.9 3,517,807 + CCNA_03336 0.12 +1.8 3,517,832 + CCNA_03336 0.15 -0.3 3,517,832 + CCNA_03336 0.15 +0.7 3,517,832 + CCNA_03336 0.15 -1.3 3,517,832 + CCNA_03336 0.15 -0.7 3,517,840 - CCNA_03336 0.15 -0.3 3,517,847 + CCNA_03336 0.16 -0.3 3,517,876 + CCNA_03336 0.20 -1.6 3,517,925 + CCNA_03336 0.25 +0.5 3,517,932 - CCNA_03336 0.26 -2.4 3,518,023 - CCNA_03336 0.37 -1.6 3,518,031 - CCNA_03336 0.38 -1.8 3,518,128 - CCNA_03336 0.49 -0.4 3,518,128 - CCNA_03336 0.49 -0.0 3,518,135 + CCNA_03336 0.50 -2.0 3,518,179 + CCNA_03336 0.55 -2.2 3,518,249 + CCNA_03336 0.63 +0.7 3,518,249 + CCNA_03336 0.63 +0.7 3,518,257 - CCNA_03336 0.64 -0.3 3,518,257 - CCNA_03336 0.64 +0.7 3,518,257 - CCNA_03336 0.64 -1.7 3,518,257 - CCNA_03336 0.64 -1.3 3,518,267 - CCNA_03336 0.65 +0.1 3,518,291 + CCNA_03336 0.68 -2.0 3,518,344 - CCNA_03336 0.74 -1.0 3,518,381 - CCNA_03336 0.79 +0.7 3,518,416 - CCNA_03336 0.83 -1.0 3,518,429 + CCNA_03336 0.84 -2.3 3,518,535 - -1.6 3,518,556 - -0.6 3,518,635 - +0.8 3,518,635 - +0.2 3,518,635 - -0.2 3,518,828 + CCNA_03337 0.33 -1.9 3,518,834 - CCNA_03337 0.34 +0.1 3,518,908 - CCNA_03337 0.47 -0.8 3,518,953 - CCNA_03337 0.55 -0.7 3,518,999 - CCNA_03337 0.63 -1.8 3,519,004 - CCNA_03337 0.64 -2.3 3,519,011 + CCNA_03337 0.65 -0.9 3,519,227 + -0.3 3,519,227 + -0.5 3,519,227 + -1.3 3,519,227 + -1.6 3,519,227 + -0.0 3,519,227 + +1.2 3,519,227 + -0.8 3,519,235 - +0.4 3,519,235 - +1.0 3,519,235 - +2.1 3,519,235 - -0.4 3,519,235 - -1.2 3,519,235 - +0.1 3,519,245 - +0.1 3,519,252 - +0.2 3,519,258 + -0.6 3,519,328 + -1.0 3,519,329 + +0.9 3,519,375 + -1.3 3,519,383 - +0.3 3,519,383 - +0.4 3,519,383 - +0.7 3,519,395 + -0.8 3,519,406 + +0.8 3,519,406 + +0.3 3,519,414 - -0.3
Or see this region's nucleotide sequence