Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03276 and CCNA_R0075 are separated by 99 nucleotides CCNA_R0075 and CCNA_03277 are separated by 44 nucleotides CCNA_03277 and CCNA_03278 are separated by 105 nucleotides
CCNA_03276: CCNA_03276 - glycerophosphoryl diester phosphodiesterase, at 3,442,782 to 3,443,771
_03276
CCNA_R0075: CCNA_R0075 - tRNA-Met, at 3,443,871 to 3,443,947
_R0075
CCNA_03277: CCNA_03277 - glycosyltransferase, at 3,443,992 to 3,445,041
_03277
CCNA_03278: CCNA_03278 - aminobutyraldehyde dehydrogenase, at 3,445,147 to 3,446,265
_03278
Position (kb)
3443
3444
3445
3446 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3442.994 kb on + strand, within CCNA_03276 at 3443.001 kb on + strand, within CCNA_03276 at 3443.008 kb on - strand, within CCNA_03276 at 3443.013 kb on - strand, within CCNA_03276 at 3443.027 kb on + strand, within CCNA_03276 at 3443.030 kb on - strand, within CCNA_03276 at 3443.114 kb on + strand, within CCNA_03276 at 3443.166 kb on + strand, within CCNA_03276 at 3443.174 kb on - strand, within CCNA_03276 at 3443.211 kb on - strand, within CCNA_03276 at 3443.211 kb on - strand, within CCNA_03276 at 3443.287 kb on - strand, within CCNA_03276 at 3443.287 kb on - strand, within CCNA_03276 at 3443.287 kb on - strand, within CCNA_03276 at 3443.399 kb on + strand, within CCNA_03276 at 3443.400 kb on + strand, within CCNA_03276 at 3443.417 kb on - strand, within CCNA_03276 at 3443.450 kb on - strand, within CCNA_03276 at 3443.471 kb on - strand, within CCNA_03276 at 3443.519 kb on + strand, within CCNA_03276 at 3443.520 kb on + strand, within CCNA_03276 at 3443.527 kb on - strand, within CCNA_03276 at 3443.576 kb on - strand, within CCNA_03276 at 3443.599 kb on + strand, within CCNA_03276 at 3443.599 kb on + strand, within CCNA_03276 at 3443.599 kb on + strand, within CCNA_03276 at 3443.601 kb on + strand, within CCNA_03276 at 3443.601 kb on + strand, within CCNA_03276 at 3443.609 kb on - strand, within CCNA_03276 at 3443.620 kb on + strand, within CCNA_03276 at 3443.636 kb on + strand, within CCNA_03276 at 3443.644 kb on - strand, within CCNA_03276 at 3443.660 kb on + strand, within CCNA_03276 at 3443.697 kb on + strand at 3443.751 kb on + strand at 3443.756 kb on + strand at 3443.759 kb on - strand at 3443.759 kb on - strand at 3443.759 kb on - strand at 3443.769 kb on - strand at 3443.801 kb on - strand at 3443.802 kb on + strand at 3443.802 kb on + strand at 3443.802 kb on + strand at 3443.802 kb on + strand at 3443.802 kb on + strand at 3443.802 kb on + strand at 3443.803 kb on - strand at 3443.810 kb on - strand at 3443.810 kb on - strand at 3443.810 kb on - strand at 3443.810 kb on - strand at 3443.841 kb on - strand at 3443.922 kb on + strand, within CCNA_R0075 at 3443.922 kb on + strand, within CCNA_R0075 at 3443.935 kb on + strand, within CCNA_R0075 at 3443.953 kb on - strand at 3443.990 kb on + strand at 3444.023 kb on + strand at 3444.042 kb on + strand at 3444.042 kb on + strand at 3444.080 kb on - strand at 3444.094 kb on + strand at 3444.113 kb on + strand, within CCNA_03277 at 3444.152 kb on + strand, within CCNA_03277 at 3444.233 kb on + strand, within CCNA_03277 at 3444.270 kb on - strand, within CCNA_03277 at 3444.270 kb on - strand, within CCNA_03277 at 3444.270 kb on - strand, within CCNA_03277 at 3444.275 kb on - strand, within CCNA_03277 at 3444.353 kb on - strand, within CCNA_03277 at 3444.433 kb on + strand, within CCNA_03277 at 3444.459 kb on - strand, within CCNA_03277 at 3444.491 kb on - strand, within CCNA_03277 at 3444.654 kb on - strand, within CCNA_03277 at 3444.669 kb on - strand, within CCNA_03277 at 3444.671 kb on - strand, within CCNA_03277 at 3444.797 kb on + strand, within CCNA_03277 at 3444.797 kb on + strand, within CCNA_03277 at 3444.797 kb on + strand, within CCNA_03277 at 3444.797 kb on + strand, within CCNA_03277 at 3444.805 kb on - strand, within CCNA_03277 at 3444.805 kb on - strand, within CCNA_03277 at 3444.805 kb on - strand, within CCNA_03277 at 3444.805 kb on - strand, within CCNA_03277 at 3444.842 kb on - strand, within CCNA_03277 at 3444.855 kb on + strand, within CCNA_03277 at 3444.878 kb on + strand, within CCNA_03277 at 3444.886 kb on - strand, within CCNA_03277 at 3444.963 kb on - strand at 3444.980 kb on + strand at 3444.990 kb on + strand at 3444.990 kb on + strand at 3444.990 kb on + strand at 3444.990 kb on + strand at 3444.990 kb on + strand at 3444.998 kb on - strand at 3445.044 kb on - strand at 3445.048 kb on + strand at 3445.048 kb on + strand at 3445.056 kb on - strand at 3445.090 kb on + strand at 3445.098 kb on - strand at 3445.098 kb on - strand at 3445.098 kb on - strand at 3445.117 kb on - strand at 3445.122 kb on + strand at 3445.128 kb on - strand at 3445.145 kb on + strand at 3445.157 kb on + strand at 3445.157 kb on + strand at 3445.157 kb on + strand at 3445.165 kb on - strand at 3445.165 kb on - strand at 3445.180 kb on - strand at 3445.201 kb on + strand at 3445.204 kb on - strand at 3445.209 kb on - strand at 3445.209 kb on - strand at 3445.214 kb on - strand at 3445.225 kb on + strand at 3445.228 kb on - strand at 3445.228 kb on - strand at 3445.233 kb on - strand at 3445.293 kb on + strand, within CCNA_03278 at 3445.308 kb on + strand, within CCNA_03278 at 3445.361 kb on + strand, within CCNA_03278 at 3445.369 kb on - strand, within CCNA_03278 at 3445.369 kb on - strand, within CCNA_03278 at 3445.410 kb on - strand, within CCNA_03278 at 3445.428 kb on - strand, within CCNA_03278 at 3445.428 kb on - strand, within CCNA_03278 at 3445.438 kb on + strand, within CCNA_03278 at 3445.438 kb on - strand, within CCNA_03278 at 3445.525 kb on - strand, within CCNA_03278 at 3445.525 kb on - strand, within CCNA_03278 at 3445.542 kb on - strand, within CCNA_03278 at 3445.543 kb on - strand, within CCNA_03278 at 3445.562 kb on - strand, within CCNA_03278 at 3445.617 kb on - strand, within CCNA_03278 at 3445.617 kb on - strand, within CCNA_03278 at 3445.667 kb on + strand, within CCNA_03278 at 3445.680 kb on - strand, within CCNA_03278 at 3445.680 kb on - strand, within CCNA_03278 at 3445.694 kb on - strand, within CCNA_03278 at 3445.788 kb on + strand, within CCNA_03278 at 3445.791 kb on - strand, within CCNA_03278 at 3445.796 kb on - strand, within CCNA_03278 at 3445.846 kb on - strand, within CCNA_03278 at 3445.846 kb on - strand, within CCNA_03278 at 3445.880 kb on + strand, within CCNA_03278 at 3445.880 kb on + strand, within CCNA_03278 at 3445.880 kb on + strand, within CCNA_03278 at 3445.880 kb on + strand, within CCNA_03278 at 3445.883 kb on - strand, within CCNA_03278 at 3445.888 kb on - strand, within CCNA_03278 at 3445.888 kb on - strand, within CCNA_03278 at 3445.888 kb on - strand, within CCNA_03278 at 3445.893 kb on - strand, within CCNA_03278 at 3445.893 kb on - strand, within CCNA_03278 at 3445.928 kb on + strand, within CCNA_03278 at 3445.938 kb on + strand, within CCNA_03278 at 3445.938 kb on + strand, within CCNA_03278 at 3445.949 kb on + strand, within CCNA_03278 at 3445.949 kb on + strand, within CCNA_03278 at 3445.949 kb on + strand, within CCNA_03278 at 3445.949 kb on + strand, within CCNA_03278 at 3445.957 kb on - strand, within CCNA_03278 at 3445.957 kb on - strand, within CCNA_03278 at 3445.986 kb on + strand, within CCNA_03278 at 3446.035 kb on + strand, within CCNA_03278 at 3446.035 kb on - strand, within CCNA_03278
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,442,994 + CCNA_03276 0.21 +0.4 3,443,001 + CCNA_03276 0.22 +0.6 3,443,008 - CCNA_03276 0.23 +0.3 3,443,013 - CCNA_03276 0.23 -1.5 3,443,027 + CCNA_03276 0.25 +2.5 3,443,030 - CCNA_03276 0.25 -0.4 3,443,114 + CCNA_03276 0.34 -0.8 3,443,166 + CCNA_03276 0.39 +0.2 3,443,174 - CCNA_03276 0.40 -0.4 3,443,211 - CCNA_03276 0.43 +0.8 3,443,211 - CCNA_03276 0.43 +0.3 3,443,287 - CCNA_03276 0.51 -0.3 3,443,287 - CCNA_03276 0.51 +0.1 3,443,287 - CCNA_03276 0.51 +0.4 3,443,399 + CCNA_03276 0.62 -0.1 3,443,400 + CCNA_03276 0.62 +0.1 3,443,417 - CCNA_03276 0.64 +0.9 3,443,450 - CCNA_03276 0.67 -1.1 3,443,471 - CCNA_03276 0.70 -0.6 3,443,519 + CCNA_03276 0.74 -0.8 3,443,520 + CCNA_03276 0.75 +0.7 3,443,527 - CCNA_03276 0.75 +0.4 3,443,576 - CCNA_03276 0.80 +0.5 3,443,599 + CCNA_03276 0.83 +0.2 3,443,599 + CCNA_03276 0.83 -1.7 3,443,599 + CCNA_03276 0.83 +0.0 3,443,601 + CCNA_03276 0.83 -0.4 3,443,601 + CCNA_03276 0.83 -0.2 3,443,609 - CCNA_03276 0.84 +0.0 3,443,620 + CCNA_03276 0.85 -0.5 3,443,636 + CCNA_03276 0.86 -0.1 3,443,644 - CCNA_03276 0.87 -0.2 3,443,660 + CCNA_03276 0.89 +0.7 3,443,697 + -1.7 3,443,751 + -0.6 3,443,756 + -0.5 3,443,759 - -0.0 3,443,759 - -0.0 3,443,759 - -0.0 3,443,769 - -0.5 3,443,801 - +0.2 3,443,802 + +0.0 3,443,802 + -1.4 3,443,802 + -0.3 3,443,802 + -0.3 3,443,802 + +0.9 3,443,802 + -0.7 3,443,803 - +0.6 3,443,810 - -0.4 3,443,810 - +0.7 3,443,810 - +0.2 3,443,810 - -0.0 3,443,841 - -0.7 3,443,922 + CCNA_R0075 0.66 +0.1 3,443,922 + CCNA_R0075 0.66 +0.1 3,443,935 + CCNA_R0075 0.83 -1.7 3,443,953 - -0.2 3,443,990 + -0.5 3,444,023 + +0.7 3,444,042 + -0.3 3,444,042 + +0.7 3,444,080 - -0.3 3,444,094 + -1.6 3,444,113 + CCNA_03277 0.12 -0.2 3,444,152 + CCNA_03277 0.15 -0.2 3,444,233 + CCNA_03277 0.23 +0.1 3,444,270 - CCNA_03277 0.26 +0.5 3,444,270 - CCNA_03277 0.26 -0.2 3,444,270 - CCNA_03277 0.26 +0.7 3,444,275 - CCNA_03277 0.27 -0.3 3,444,353 - CCNA_03277 0.34 -0.7 3,444,433 + CCNA_03277 0.42 +0.7 3,444,459 - CCNA_03277 0.44 -0.8 3,444,491 - CCNA_03277 0.48 +0.6 3,444,654 - CCNA_03277 0.63 +0.1 3,444,669 - CCNA_03277 0.64 -1.6 3,444,671 - CCNA_03277 0.65 -2.0 3,444,797 + CCNA_03277 0.77 +0.7 3,444,797 + CCNA_03277 0.77 +0.3 3,444,797 + CCNA_03277 0.77 -1.2 3,444,797 + CCNA_03277 0.77 -2.0 3,444,805 - CCNA_03277 0.77 +1.8 3,444,805 - CCNA_03277 0.77 -0.3 3,444,805 - CCNA_03277 0.77 -2.3 3,444,805 - CCNA_03277 0.77 +0.1 3,444,842 - CCNA_03277 0.81 +0.7 3,444,855 + CCNA_03277 0.82 -0.2 3,444,878 + CCNA_03277 0.84 +0.7 3,444,886 - CCNA_03277 0.85 +0.1 3,444,963 - -0.3 3,444,980 + +0.7 3,444,990 + -2.0 3,444,990 + +0.7 3,444,990 + -0.3 3,444,990 + +1.1 3,444,990 + +0.3 3,444,998 - +0.5 3,445,044 - +0.7 3,445,048 + -0.7 3,445,048 + -0.1 3,445,056 - +0.1 3,445,090 + +2.3 3,445,098 - +0.2 3,445,098 - +0.2 3,445,098 - +0.3 3,445,117 - -0.1 3,445,122 + +0.1 3,445,128 - -0.3 3,445,145 + +0.2 3,445,157 + +0.7 3,445,157 + +0.2 3,445,157 + -0.0 3,445,165 - +0.1 3,445,165 - -0.3 3,445,180 - +0.7 3,445,201 + +1.1 3,445,204 - +0.2 3,445,209 - +0.5 3,445,209 - -0.4 3,445,214 - +0.2 3,445,225 + +0.7 3,445,228 - +0.3 3,445,228 - +0.7 3,445,233 - -0.9 3,445,293 + CCNA_03278 0.13 -1.1 3,445,308 + CCNA_03278 0.14 +0.0 3,445,361 + CCNA_03278 0.19 -0.4 3,445,369 - CCNA_03278 0.20 -0.7 3,445,369 - CCNA_03278 0.20 -0.4 3,445,410 - CCNA_03278 0.24 -1.3 3,445,428 - CCNA_03278 0.25 +0.2 3,445,428 - CCNA_03278 0.25 +0.5 3,445,438 + CCNA_03278 0.26 +0.2 3,445,438 - CCNA_03278 0.26 -0.1 3,445,525 - CCNA_03278 0.34 -0.0 3,445,525 - CCNA_03278 0.34 -0.1 3,445,542 - CCNA_03278 0.35 -0.7 3,445,543 - CCNA_03278 0.35 +0.7 3,445,562 - CCNA_03278 0.37 -1.3 3,445,617 - CCNA_03278 0.42 -0.4 3,445,617 - CCNA_03278 0.42 -0.3 3,445,667 + CCNA_03278 0.46 +0.7 3,445,680 - CCNA_03278 0.48 +0.4 3,445,680 - CCNA_03278 0.48 +0.4 3,445,694 - CCNA_03278 0.49 -0.6 3,445,788 + CCNA_03278 0.57 +0.2 3,445,791 - CCNA_03278 0.58 +0.3 3,445,796 - CCNA_03278 0.58 +0.7 3,445,846 - CCNA_03278 0.62 +0.0 3,445,846 - CCNA_03278 0.62 +0.6 3,445,880 + CCNA_03278 0.66 -0.3 3,445,880 + CCNA_03278 0.66 -1.2 3,445,880 + CCNA_03278 0.66 +0.6 3,445,880 + CCNA_03278 0.66 -2.3 3,445,883 - CCNA_03278 0.66 +0.7 3,445,888 - CCNA_03278 0.66 +0.9 3,445,888 - CCNA_03278 0.66 +1.1 3,445,888 - CCNA_03278 0.66 -0.0 3,445,893 - CCNA_03278 0.67 +0.0 3,445,893 - CCNA_03278 0.67 +0.2 3,445,928 + CCNA_03278 0.70 -1.2 3,445,938 + CCNA_03278 0.71 +0.8 3,445,938 + CCNA_03278 0.71 +1.7 3,445,949 + CCNA_03278 0.72 +0.2 3,445,949 + CCNA_03278 0.72 +0.3 3,445,949 + CCNA_03278 0.72 +0.2 3,445,949 + CCNA_03278 0.72 +0.0 3,445,957 - CCNA_03278 0.72 -0.7 3,445,957 - CCNA_03278 0.72 +0.2 3,445,986 + CCNA_03278 0.75 -0.8 3,446,035 + CCNA_03278 0.79 -0.5 3,446,035 - CCNA_03278 0.79 +0.0
Or see this region's nucleotide sequence