Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03160

Experiment: PYE no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_03159 and CCNA_03160 are separated by 117 nucleotidesCCNA_03160 and CCNA_03161 are separated by 88 nucleotides CCNA_03159: CCNA_03159 - sulfite reductase (NADPH) flavoprotein alpha-component, at 3,314,464 to 3,315,978 _03159 CCNA_03160: CCNA_03160 - molybdopterin-guanine dinucleotide biosynthesis protein A, at 3,316,096 to 3,316,611 _03160 CCNA_03161: CCNA_03161 - transcriptional regulator xylR, at 3,316,700 to 3,317,755 _03161 Position (kb) 3316 3317Strain fitness (log2 ratio) -2 -1 0 1 2at 3315.123 kb on - strand, within CCNA_03159at 3315.168 kb on + strand, within CCNA_03159at 3315.300 kb on - strand, within CCNA_03159at 3315.309 kb on + strand, within CCNA_03159at 3315.489 kb on - strand, within CCNA_03159at 3315.521 kb on + strand, within CCNA_03159at 3315.523 kb on + strand, within CCNA_03159at 3315.545 kb on + strand, within CCNA_03159at 3315.576 kb on + strand, within CCNA_03159at 3315.606 kb on - strand, within CCNA_03159at 3315.638 kb on + strand, within CCNA_03159at 3315.722 kb on + strand, within CCNA_03159at 3315.728 kb on + strand, within CCNA_03159at 3315.746 kb on + strand, within CCNA_03159at 3315.783 kb on + strand, within CCNA_03159at 3315.783 kb on + strand, within CCNA_03159at 3315.783 kb on + strand, within CCNA_03159at 3315.788 kb on + strand, within CCNA_03159at 3315.791 kb on - strand, within CCNA_03159at 3315.791 kb on - strand, within CCNA_03159at 3315.791 kb on - strand, within CCNA_03159at 3315.796 kb on - strand, within CCNA_03159at 3315.845 kb on - strandat 3315.877 kb on + strandat 3315.879 kb on - strandat 3315.980 kb on - strandat 3315.980 kb on - strandat 3316.010 kb on - strandat 3316.098 kb on + strandat 3316.106 kb on - strandat 3316.183 kb on + strand, within CCNA_03160at 3316.495 kb on + strand, within CCNA_03160at 3316.547 kb on + strand, within CCNA_03160at 3316.547 kb on + strand, within CCNA_03160at 3316.607 kb on + strandat 3316.671 kb on - strandat 3316.694 kb on - strandat 3316.707 kb on + strandat 3316.736 kb on + strandat 3316.744 kb on - strandat 3316.744 kb on - strandat 3316.844 kb on - strand, within CCNA_03161at 3316.941 kb on - strand, within CCNA_03161at 3317.042 kb on + strand, within CCNA_03161at 3317.057 kb on + strand, within CCNA_03161at 3317.099 kb on - strand, within CCNA_03161at 3317.232 kb on + strand, within CCNA_03161at 3317.251 kb on + strand, within CCNA_03161at 3317.272 kb on - strand, within CCNA_03161at 3317.272 kb on - strand, within CCNA_03161at 3317.284 kb on + strand, within CCNA_03161at 3317.318 kb on - strand, within CCNA_03161at 3317.322 kb on + strand, within CCNA_03161at 3317.340 kb on - strand, within CCNA_03161at 3317.389 kb on + strand, within CCNA_03161at 3317.411 kb on + strand, within CCNA_03161at 3317.411 kb on + strand, within CCNA_03161at 3317.411 kb on + strand, within CCNA_03161at 3317.411 kb on + strand, within CCNA_03161at 3317.411 kb on + strand, within CCNA_03161at 3317.447 kb on - strand, within CCNA_03161at 3317.527 kb on - strand, within CCNA_03161at 3317.573 kb on + strand, within CCNA_03161at 3317.589 kb on - strand, within CCNA_03161at 3317.591 kb on + strand, within CCNA_03161at 3317.591 kb on + strand, within CCNA_03161at 3317.591 kb on + strand, within CCNA_03161

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
remove
3,315,123 - CCNA_03159 0.43 -1.5
3,315,168 + CCNA_03159 0.46 +0.0
3,315,300 - CCNA_03159 0.55 -0.6
3,315,309 + CCNA_03159 0.56 +0.3
3,315,489 - CCNA_03159 0.68 -0.1
3,315,521 + CCNA_03159 0.70 -0.1
3,315,523 + CCNA_03159 0.70 +0.5
3,315,545 + CCNA_03159 0.71 +0.2
3,315,576 + CCNA_03159 0.73 +0.1
3,315,606 - CCNA_03159 0.75 +0.5
3,315,638 + CCNA_03159 0.77 +0.1
3,315,722 + CCNA_03159 0.83 +0.6
3,315,728 + CCNA_03159 0.83 -0.5
3,315,746 + CCNA_03159 0.85 +0.5
3,315,783 + CCNA_03159 0.87 +1.0
3,315,783 + CCNA_03159 0.87 +0.6
3,315,783 + CCNA_03159 0.87 -0.1
3,315,788 + CCNA_03159 0.87 +0.0
3,315,791 - CCNA_03159 0.88 -0.9
3,315,791 - CCNA_03159 0.88 -1.4
3,315,791 - CCNA_03159 0.88 -0.2
3,315,796 - CCNA_03159 0.88 -0.9
3,315,845 - -0.8
3,315,877 + +0.4
3,315,879 - +1.7
3,315,980 - +0.1
3,315,980 - +0.9
3,316,010 - -0.0
3,316,098 + -0.5
3,316,106 - +0.4
3,316,183 + CCNA_03160 0.17 -1.6
3,316,495 + CCNA_03160 0.77 +0.1
3,316,547 + CCNA_03160 0.87 -0.1
3,316,547 + CCNA_03160 0.87 -1.5
3,316,607 + -0.1
3,316,671 - -0.3
3,316,694 - +0.6
3,316,707 + -0.1
3,316,736 + +0.5
3,316,744 - -0.9
3,316,744 - +1.8
3,316,844 - CCNA_03161 0.14 +0.3
3,316,941 - CCNA_03161 0.23 -0.5
3,317,042 + CCNA_03161 0.32 -0.1
3,317,057 + CCNA_03161 0.34 -0.6
3,317,099 - CCNA_03161 0.38 +1.7
3,317,232 + CCNA_03161 0.50 +0.0
3,317,251 + CCNA_03161 0.52 -0.4
3,317,272 - CCNA_03161 0.54 -0.2
3,317,272 - CCNA_03161 0.54 -1.3
3,317,284 + CCNA_03161 0.55 +0.9
3,317,318 - CCNA_03161 0.59 +0.6
3,317,322 + CCNA_03161 0.59 +0.0
3,317,340 - CCNA_03161 0.61 +0.7
3,317,389 + CCNA_03161 0.65 -0.8
3,317,411 + CCNA_03161 0.67 -0.1
3,317,411 + CCNA_03161 0.67 -0.5
3,317,411 + CCNA_03161 0.67 -0.0
3,317,411 + CCNA_03161 0.67 +1.2
3,317,411 + CCNA_03161 0.67 +0.7
3,317,447 - CCNA_03161 0.71 -0.2
3,317,527 - CCNA_03161 0.78 +0.1
3,317,573 + CCNA_03161 0.83 -1.8
3,317,589 - CCNA_03161 0.84 +0.2
3,317,591 + CCNA_03161 0.84 -1.6
3,317,591 + CCNA_03161 0.84 +0.1
3,317,591 + CCNA_03161 0.84 +0.7

Or see this region's nucleotide sequence