Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03159 and CCNA_03160 are separated by 117 nucleotides CCNA_03160 and CCNA_03161 are separated by 88 nucleotides
CCNA_03159: CCNA_03159 - sulfite reductase (NADPH) flavoprotein alpha-component, at 3,314,464 to 3,315,978
_03159
CCNA_03160: CCNA_03160 - molybdopterin-guanine dinucleotide biosynthesis protein A, at 3,316,096 to 3,316,611
_03160
CCNA_03161: CCNA_03161 - transcriptional regulator xylR, at 3,316,700 to 3,317,755
_03161
Position (kb)
3316
3317 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3315.123 kb on - strand, within CCNA_03159 at 3315.168 kb on + strand, within CCNA_03159 at 3315.300 kb on - strand, within CCNA_03159 at 3315.309 kb on + strand, within CCNA_03159 at 3315.489 kb on - strand, within CCNA_03159 at 3315.521 kb on + strand, within CCNA_03159 at 3315.523 kb on + strand, within CCNA_03159 at 3315.545 kb on + strand, within CCNA_03159 at 3315.576 kb on + strand, within CCNA_03159 at 3315.606 kb on - strand, within CCNA_03159 at 3315.638 kb on + strand, within CCNA_03159 at 3315.722 kb on + strand, within CCNA_03159 at 3315.728 kb on + strand, within CCNA_03159 at 3315.746 kb on + strand, within CCNA_03159 at 3315.783 kb on + strand, within CCNA_03159 at 3315.783 kb on + strand, within CCNA_03159 at 3315.783 kb on + strand, within CCNA_03159 at 3315.788 kb on + strand, within CCNA_03159 at 3315.791 kb on - strand, within CCNA_03159 at 3315.791 kb on - strand, within CCNA_03159 at 3315.791 kb on - strand, within CCNA_03159 at 3315.796 kb on - strand, within CCNA_03159 at 3315.845 kb on - strand at 3315.877 kb on + strand at 3315.879 kb on - strand at 3315.980 kb on - strand at 3315.980 kb on - strand at 3316.010 kb on - strand at 3316.098 kb on + strand at 3316.106 kb on - strand at 3316.183 kb on + strand, within CCNA_03160 at 3316.495 kb on + strand, within CCNA_03160 at 3316.547 kb on + strand, within CCNA_03160 at 3316.547 kb on + strand, within CCNA_03160 at 3316.607 kb on + strand at 3316.671 kb on - strand at 3316.694 kb on - strand at 3316.707 kb on + strand at 3316.736 kb on + strand at 3316.744 kb on - strand at 3316.744 kb on - strand at 3316.844 kb on - strand, within CCNA_03161 at 3316.941 kb on - strand, within CCNA_03161 at 3317.042 kb on + strand, within CCNA_03161 at 3317.057 kb on + strand, within CCNA_03161 at 3317.099 kb on - strand, within CCNA_03161 at 3317.232 kb on + strand, within CCNA_03161 at 3317.251 kb on + strand, within CCNA_03161 at 3317.272 kb on - strand, within CCNA_03161 at 3317.272 kb on - strand, within CCNA_03161 at 3317.284 kb on + strand, within CCNA_03161 at 3317.318 kb on - strand, within CCNA_03161 at 3317.322 kb on + strand, within CCNA_03161 at 3317.340 kb on - strand, within CCNA_03161 at 3317.389 kb on + strand, within CCNA_03161 at 3317.411 kb on + strand, within CCNA_03161 at 3317.411 kb on + strand, within CCNA_03161 at 3317.411 kb on + strand, within CCNA_03161 at 3317.411 kb on + strand, within CCNA_03161 at 3317.411 kb on + strand, within CCNA_03161 at 3317.447 kb on - strand, within CCNA_03161 at 3317.527 kb on - strand, within CCNA_03161 at 3317.573 kb on + strand, within CCNA_03161 at 3317.589 kb on - strand, within CCNA_03161 at 3317.591 kb on + strand, within CCNA_03161 at 3317.591 kb on + strand, within CCNA_03161 at 3317.591 kb on + strand, within CCNA_03161
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,315,123 - CCNA_03159 0.43 -1.5 3,315,168 + CCNA_03159 0.46 +0.0 3,315,300 - CCNA_03159 0.55 -0.6 3,315,309 + CCNA_03159 0.56 +0.3 3,315,489 - CCNA_03159 0.68 -0.1 3,315,521 + CCNA_03159 0.70 -0.1 3,315,523 + CCNA_03159 0.70 +0.5 3,315,545 + CCNA_03159 0.71 +0.2 3,315,576 + CCNA_03159 0.73 +0.1 3,315,606 - CCNA_03159 0.75 +0.5 3,315,638 + CCNA_03159 0.77 +0.1 3,315,722 + CCNA_03159 0.83 +0.6 3,315,728 + CCNA_03159 0.83 -0.5 3,315,746 + CCNA_03159 0.85 +0.5 3,315,783 + CCNA_03159 0.87 +1.0 3,315,783 + CCNA_03159 0.87 +0.6 3,315,783 + CCNA_03159 0.87 -0.1 3,315,788 + CCNA_03159 0.87 +0.0 3,315,791 - CCNA_03159 0.88 -0.9 3,315,791 - CCNA_03159 0.88 -1.4 3,315,791 - CCNA_03159 0.88 -0.2 3,315,796 - CCNA_03159 0.88 -0.9 3,315,845 - -0.8 3,315,877 + +0.4 3,315,879 - +1.7 3,315,980 - +0.1 3,315,980 - +0.9 3,316,010 - -0.0 3,316,098 + -0.5 3,316,106 - +0.4 3,316,183 + CCNA_03160 0.17 -1.6 3,316,495 + CCNA_03160 0.77 +0.1 3,316,547 + CCNA_03160 0.87 -0.1 3,316,547 + CCNA_03160 0.87 -1.5 3,316,607 + -0.1 3,316,671 - -0.3 3,316,694 - +0.6 3,316,707 + -0.1 3,316,736 + +0.5 3,316,744 - -0.9 3,316,744 - +1.8 3,316,844 - CCNA_03161 0.14 +0.3 3,316,941 - CCNA_03161 0.23 -0.5 3,317,042 + CCNA_03161 0.32 -0.1 3,317,057 + CCNA_03161 0.34 -0.6 3,317,099 - CCNA_03161 0.38 +1.7 3,317,232 + CCNA_03161 0.50 +0.0 3,317,251 + CCNA_03161 0.52 -0.4 3,317,272 - CCNA_03161 0.54 -0.2 3,317,272 - CCNA_03161 0.54 -1.3 3,317,284 + CCNA_03161 0.55 +0.9 3,317,318 - CCNA_03161 0.59 +0.6 3,317,322 + CCNA_03161 0.59 +0.0 3,317,340 - CCNA_03161 0.61 +0.7 3,317,389 + CCNA_03161 0.65 -0.8 3,317,411 + CCNA_03161 0.67 -0.1 3,317,411 + CCNA_03161 0.67 -0.5 3,317,411 + CCNA_03161 0.67 -0.0 3,317,411 + CCNA_03161 0.67 +1.2 3,317,411 + CCNA_03161 0.67 +0.7 3,317,447 - CCNA_03161 0.71 -0.2 3,317,527 - CCNA_03161 0.78 +0.1 3,317,573 + CCNA_03161 0.83 -1.8 3,317,589 - CCNA_03161 0.84 +0.2 3,317,591 + CCNA_03161 0.84 -1.6 3,317,591 + CCNA_03161 0.84 +0.1 3,317,591 + CCNA_03161 0.84 +0.7
Or see this region's nucleotide sequence