Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03020 and CCNA_03021 are separated by 9 nucleotides CCNA_03021 and CCNA_03022 overlap by 31 nucleotides
CCNA_03020: CCNA_03020 - phosphatidylinositol-specific phospholipase C1-like protein, at 3,174,508 to 3,175,635
_03020
CCNA_03021: CCNA_03021 - hypothetical protein, at 3,175,645 to 3,175,857
_03021
CCNA_03022: CCNA_03022 - PiuB-family transmembrane transporter, at 3,175,827 to 3,177,011
_03022
Position (kb)
3175
3176 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3174.649 kb on + strand, within CCNA_03020 at 3174.725 kb on - strand, within CCNA_03020 at 3174.740 kb on - strand, within CCNA_03020 at 3174.782 kb on - strand, within CCNA_03020 at 3174.816 kb on + strand, within CCNA_03020 at 3174.824 kb on - strand, within CCNA_03020 at 3174.831 kb on + strand, within CCNA_03020 at 3174.838 kb on + strand, within CCNA_03020 at 3174.868 kb on + strand, within CCNA_03020 at 3174.873 kb on + strand, within CCNA_03020 at 3174.876 kb on - strand, within CCNA_03020 at 3174.881 kb on - strand, within CCNA_03020 at 3174.881 kb on - strand, within CCNA_03020 at 3174.881 kb on - strand, within CCNA_03020 at 3174.902 kb on + strand, within CCNA_03020 at 3174.979 kb on + strand, within CCNA_03020 at 3174.986 kb on + strand, within CCNA_03020 at 3175.054 kb on + strand, within CCNA_03020 at 3175.054 kb on + strand, within CCNA_03020 at 3175.054 kb on + strand, within CCNA_03020 at 3175.059 kb on + strand, within CCNA_03020 at 3175.062 kb on - strand, within CCNA_03020 at 3175.077 kb on + strand, within CCNA_03020 at 3175.080 kb on - strand, within CCNA_03020 at 3175.084 kb on + strand, within CCNA_03020 at 3175.108 kb on + strand, within CCNA_03020 at 3175.149 kb on + strand, within CCNA_03020 at 3175.152 kb on - strand, within CCNA_03020 at 3175.155 kb on + strand, within CCNA_03020 at 3175.155 kb on + strand, within CCNA_03020 at 3175.155 kb on + strand, within CCNA_03020 at 3175.155 kb on + strand, within CCNA_03020 at 3175.157 kb on - strand, within CCNA_03020 at 3175.163 kb on - strand, within CCNA_03020 at 3175.163 kb on - strand, within CCNA_03020 at 3175.163 kb on - strand, within CCNA_03020 at 3175.163 kb on - strand, within CCNA_03020 at 3175.163 kb on - strand, within CCNA_03020 at 3175.163 kb on - strand, within CCNA_03020 at 3175.163 kb on - strand, within CCNA_03020 at 3175.163 kb on - strand, within CCNA_03020 at 3175.163 kb on - strand, within CCNA_03020 at 3175.170 kb on - strand, within CCNA_03020 at 3175.177 kb on + strand, within CCNA_03020 at 3175.201 kb on - strand, within CCNA_03020 at 3175.202 kb on - strand, within CCNA_03020 at 3175.260 kb on + strand, within CCNA_03020 at 3175.290 kb on + strand, within CCNA_03020 at 3175.339 kb on + strand, within CCNA_03020 at 3175.390 kb on + strand, within CCNA_03020 at 3175.397 kb on - strand, within CCNA_03020 at 3175.433 kb on - strand, within CCNA_03020 at 3175.479 kb on + strand, within CCNA_03020 at 3175.482 kb on - strand, within CCNA_03020 at 3175.489 kb on + strand, within CCNA_03020 at 3175.638 kb on + strand at 3175.667 kb on + strand, within CCNA_03021 at 3175.769 kb on - strand, within CCNA_03021 at 3175.812 kb on + strand, within CCNA_03021 at 3175.853 kb on + strand at 3175.896 kb on + strand at 3175.972 kb on + strand, within CCNA_03022 at 3175.973 kb on - strand, within CCNA_03022 at 3175.973 kb on - strand, within CCNA_03022 at 3175.974 kb on - strand, within CCNA_03022 at 3176.033 kb on + strand, within CCNA_03022 at 3176.041 kb on - strand, within CCNA_03022 at 3176.049 kb on - strand, within CCNA_03022 at 3176.076 kb on + strand, within CCNA_03022 at 3176.101 kb on + strand, within CCNA_03022 at 3176.193 kb on + strand, within CCNA_03022 at 3176.196 kb on - strand, within CCNA_03022 at 3176.206 kb on - strand, within CCNA_03022 at 3176.217 kb on + strand, within CCNA_03022 at 3176.217 kb on + strand, within CCNA_03022 at 3176.225 kb on - strand, within CCNA_03022 at 3176.225 kb on - strand, within CCNA_03022 at 3176.225 kb on - strand, within CCNA_03022 at 3176.354 kb on + strand, within CCNA_03022 at 3176.354 kb on + strand, within CCNA_03022 at 3176.360 kb on + strand, within CCNA_03022 at 3176.362 kb on - strand, within CCNA_03022 at 3176.385 kb on + strand, within CCNA_03022 at 3176.385 kb on + strand, within CCNA_03022 at 3176.448 kb on - strand, within CCNA_03022 at 3176.448 kb on - strand, within CCNA_03022 at 3176.466 kb on - strand, within CCNA_03022 at 3176.476 kb on - strand, within CCNA_03022 at 3176.479 kb on + strand, within CCNA_03022 at 3176.479 kb on + strand, within CCNA_03022 at 3176.605 kb on + strand, within CCNA_03022 at 3176.682 kb on + strand, within CCNA_03022 at 3176.682 kb on + strand, within CCNA_03022 at 3176.734 kb on + strand, within CCNA_03022 at 3176.734 kb on + strand, within CCNA_03022 at 3176.749 kb on - strand, within CCNA_03022 at 3176.749 kb on - strand, within CCNA_03022 at 3176.749 kb on - strand, within CCNA_03022 at 3176.775 kb on - strand, within CCNA_03022 at 3176.789 kb on - strand, within CCNA_03022
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,174,649 + CCNA_03020 0.12 -0.4 3,174,725 - CCNA_03020 0.19 -1.2 3,174,740 - CCNA_03020 0.21 -1.0 3,174,782 - CCNA_03020 0.24 -0.2 3,174,816 + CCNA_03020 0.27 +0.6 3,174,824 - CCNA_03020 0.28 -0.7 3,174,831 + CCNA_03020 0.29 +0.5 3,174,838 + CCNA_03020 0.29 +1.0 3,174,868 + CCNA_03020 0.32 -0.2 3,174,873 + CCNA_03020 0.32 -0.9 3,174,876 - CCNA_03020 0.33 +0.2 3,174,881 - CCNA_03020 0.33 +0.0 3,174,881 - CCNA_03020 0.33 -0.2 3,174,881 - CCNA_03020 0.33 -0.4 3,174,902 + CCNA_03020 0.35 -0.2 3,174,979 + CCNA_03020 0.42 -0.8 3,174,986 + CCNA_03020 0.42 -0.3 3,175,054 + CCNA_03020 0.48 -0.1 3,175,054 + CCNA_03020 0.48 -1.0 3,175,054 + CCNA_03020 0.48 -0.8 3,175,059 + CCNA_03020 0.49 +0.1 3,175,062 - CCNA_03020 0.49 -0.1 3,175,077 + CCNA_03020 0.50 -0.4 3,175,080 - CCNA_03020 0.51 -0.8 3,175,084 + CCNA_03020 0.51 -0.8 3,175,108 + CCNA_03020 0.53 -0.3 3,175,149 + CCNA_03020 0.57 -1.6 3,175,152 - CCNA_03020 0.57 +0.4 3,175,155 + CCNA_03020 0.57 +0.3 3,175,155 + CCNA_03020 0.57 -0.3 3,175,155 + CCNA_03020 0.57 -0.1 3,175,155 + CCNA_03020 0.57 +0.6 3,175,157 - CCNA_03020 0.58 +0.6 3,175,163 - CCNA_03020 0.58 +0.3 3,175,163 - CCNA_03020 0.58 +0.2 3,175,163 - CCNA_03020 0.58 +0.3 3,175,163 - CCNA_03020 0.58 +0.1 3,175,163 - CCNA_03020 0.58 +1.1 3,175,163 - CCNA_03020 0.58 +0.9 3,175,163 - CCNA_03020 0.58 +0.5 3,175,163 - CCNA_03020 0.58 +0.0 3,175,163 - CCNA_03020 0.58 -1.5 3,175,170 - CCNA_03020 0.59 +0.4 3,175,177 + CCNA_03020 0.59 -0.7 3,175,201 - CCNA_03020 0.61 -1.0 3,175,202 - CCNA_03020 0.62 +0.6 3,175,260 + CCNA_03020 0.67 +0.2 3,175,290 + CCNA_03020 0.69 +1.0 3,175,339 + CCNA_03020 0.74 +0.0 3,175,390 + CCNA_03020 0.78 -0.8 3,175,397 - CCNA_03020 0.79 +0.5 3,175,433 - CCNA_03020 0.82 +1.2 3,175,479 + CCNA_03020 0.86 +0.4 3,175,482 - CCNA_03020 0.86 +0.3 3,175,489 + CCNA_03020 0.87 +0.5 3,175,638 + +0.3 3,175,667 + CCNA_03021 0.10 -1.8 3,175,769 - CCNA_03021 0.58 -0.7 3,175,812 + CCNA_03021 0.78 +1.1 3,175,853 + -1.1 3,175,896 + +1.9 3,175,972 + CCNA_03022 0.12 +0.1 3,175,973 - CCNA_03022 0.12 -0.5 3,175,973 - CCNA_03022 0.12 +1.3 3,175,974 - CCNA_03022 0.12 +0.5 3,176,033 + CCNA_03022 0.17 -1.4 3,176,041 - CCNA_03022 0.18 +0.6 3,176,049 - CCNA_03022 0.19 +0.1 3,176,076 + CCNA_03022 0.21 -0.9 3,176,101 + CCNA_03022 0.23 -1.5 3,176,193 + CCNA_03022 0.31 +0.8 3,176,196 - CCNA_03022 0.31 -0.4 3,176,206 - CCNA_03022 0.32 +0.5 3,176,217 + CCNA_03022 0.33 -2.5 3,176,217 + CCNA_03022 0.33 -0.7 3,176,225 - CCNA_03022 0.34 +0.9 3,176,225 - CCNA_03022 0.34 +0.0 3,176,225 - CCNA_03022 0.34 +0.2 3,176,354 + CCNA_03022 0.44 +0.4 3,176,354 + CCNA_03022 0.44 -1.1 3,176,360 + CCNA_03022 0.45 -0.2 3,176,362 - CCNA_03022 0.45 +0.5 3,176,385 + CCNA_03022 0.47 -0.3 3,176,385 + CCNA_03022 0.47 -0.7 3,176,448 - CCNA_03022 0.52 +0.0 3,176,448 - CCNA_03022 0.52 +1.3 3,176,466 - CCNA_03022 0.54 +0.1 3,176,476 - CCNA_03022 0.55 -0.1 3,176,479 + CCNA_03022 0.55 -2.9 3,176,479 + CCNA_03022 0.55 -0.6 3,176,605 + CCNA_03022 0.66 +0.9 3,176,682 + CCNA_03022 0.72 -2.3 3,176,682 + CCNA_03022 0.72 +0.7 3,176,734 + CCNA_03022 0.77 -0.7 3,176,734 + CCNA_03022 0.77 -0.1 3,176,749 - CCNA_03022 0.78 -0.4 3,176,749 - CCNA_03022 0.78 -0.2 3,176,749 - CCNA_03022 0.78 +1.5 3,176,775 - CCNA_03022 0.80 -0.0 3,176,789 - CCNA_03022 0.81 +0.6
Or see this region's nucleotide sequence