Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02997

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02996 and CCNA_02997 are separated by 132 nucleotidesCCNA_02997 and CCNA_03904 are separated by 352 nucleotidesCCNA_03904 and CCNA_02999 are separated by 163 nucleotides CCNA_02996: CCNA_02996 - patatin family phospholipase domain protein, at 3,151,281 to 3,152,474 _02996 CCNA_02997: CCNA_02997 - cold shock protein CspA, at 3,152,607 to 3,152,816 _02997 CCNA_03904: CCNA_03904 - hypothetical protein, at 3,153,169 to 3,153,333 _03904 CCNA_02999: CCNA_02999 - hypothetical protein, at 3,153,497 to 3,154,282 _02999 Position (kb) 3152 3153Strain fitness (log2 ratio) -2 -1 0 1 2at 3151.637 kb on - strand, within CCNA_02996at 3151.660 kb on + strand, within CCNA_02996at 3151.670 kb on + strand, within CCNA_02996at 3151.694 kb on - strand, within CCNA_02996at 3151.699 kb on + strand, within CCNA_02996at 3151.699 kb on + strand, within CCNA_02996at 3151.758 kb on + strand, within CCNA_02996at 3151.820 kb on - strand, within CCNA_02996at 3151.867 kb on - strand, within CCNA_02996at 3151.876 kb on + strand, within CCNA_02996at 3151.878 kb on - strand, within CCNA_02996at 3151.899 kb on + strand, within CCNA_02996at 3151.941 kb on - strand, within CCNA_02996at 3151.957 kb on + strand, within CCNA_02996at 3151.962 kb on + strand, within CCNA_02996at 3151.993 kb on + strand, within CCNA_02996at 3152.011 kb on - strand, within CCNA_02996at 3152.034 kb on + strand, within CCNA_02996at 3152.039 kb on + strand, within CCNA_02996at 3152.039 kb on + strand, within CCNA_02996at 3152.083 kb on + strand, within CCNA_02996at 3152.083 kb on + strand, within CCNA_02996at 3152.091 kb on - strand, within CCNA_02996at 3152.103 kb on - strand, within CCNA_02996at 3152.106 kb on + strand, within CCNA_02996at 3152.114 kb on - strand, within CCNA_02996at 3152.115 kb on - strand, within CCNA_02996at 3152.115 kb on - strand, within CCNA_02996at 3152.127 kb on + strand, within CCNA_02996at 3152.205 kb on - strand, within CCNA_02996at 3152.224 kb on + strand, within CCNA_02996at 3152.232 kb on - strand, within CCNA_02996at 3152.233 kb on - strand, within CCNA_02996at 3152.242 kb on - strand, within CCNA_02996at 3152.262 kb on + strand, within CCNA_02996at 3152.272 kb on - strand, within CCNA_02996at 3152.289 kb on + strand, within CCNA_02996at 3152.297 kb on - strand, within CCNA_02996at 3152.297 kb on - strand, within CCNA_02996at 3152.308 kb on + strand, within CCNA_02996at 3152.310 kb on + strand, within CCNA_02996at 3152.318 kb on - strand, within CCNA_02996at 3152.318 kb on - strand, within CCNA_02996at 3152.335 kb on + strand, within CCNA_02996at 3152.343 kb on - strand, within CCNA_02996at 3152.343 kb on - strand, within CCNA_02996at 3152.397 kb on + strandat 3152.416 kb on - strandat 3152.429 kb on + strandat 3152.429 kb on + strandat 3152.429 kb on + strandat 3152.429 kb on + strandat 3152.437 kb on - strandat 3152.437 kb on - strandat 3152.437 kb on - strandat 3152.437 kb on - strandat 3152.437 kb on - strandat 3152.437 kb on - strandat 3152.530 kb on + strandat 3152.541 kb on + strandat 3152.549 kb on - strandat 3152.586 kb on + strandat 3152.604 kb on + strandat 3152.613 kb on - strandat 3152.676 kb on + strand, within CCNA_02997at 3152.676 kb on + strand, within CCNA_02997at 3152.684 kb on - strand, within CCNA_02997at 3152.684 kb on - strand, within CCNA_02997at 3152.697 kb on + strand, within CCNA_02997at 3152.705 kb on - strand, within CCNA_02997at 3152.705 kb on - strand, within CCNA_02997at 3152.705 kb on - strand, within CCNA_02997at 3152.705 kb on - strand, within CCNA_02997at 3152.769 kb on + strand, within CCNA_02997at 3152.777 kb on + strand, within CCNA_02997at 3152.783 kb on - strand, within CCNA_02997at 3152.785 kb on - strand, within CCNA_02997at 3153.081 kb on + strandat 3153.081 kb on + strandat 3153.084 kb on - strandat 3153.084 kb on - strandat 3153.084 kb on - strandat 3153.089 kb on - strandat 3153.107 kb on + strandat 3153.115 kb on - strandat 3153.129 kb on - strandat 3153.217 kb on + strand, within CCNA_03904at 3153.280 kb on + strand, within CCNA_03904at 3153.365 kb on - strandat 3153.482 kb on - strandat 3153.487 kb on + strandat 3153.487 kb on + strandat 3153.489 kb on + strandat 3153.495 kb on - strandat 3153.507 kb on + strandat 3153.512 kb on + strandat 3153.512 kb on + strandat 3153.546 kb on + strandat 3153.546 kb on + strandat 3153.554 kb on - strandat 3153.554 kb on - strandat 3153.564 kb on - strandat 3153.642 kb on - strand, within CCNA_02999at 3153.660 kb on + strand, within CCNA_02999at 3153.700 kb on + strand, within CCNA_02999at 3153.713 kb on + strand, within CCNA_02999at 3153.786 kb on + strand, within CCNA_02999at 3153.786 kb on + strand, within CCNA_02999

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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3,151,637 - CCNA_02996 0.30 +0.9
3,151,660 + CCNA_02996 0.32 -0.6
3,151,670 + CCNA_02996 0.33 +0.4
3,151,694 - CCNA_02996 0.35 +0.8
3,151,699 + CCNA_02996 0.35 -0.2
3,151,699 + CCNA_02996 0.35 -1.0
3,151,758 + CCNA_02996 0.40 +0.2
3,151,820 - CCNA_02996 0.45 +1.0
3,151,867 - CCNA_02996 0.49 -2.3
3,151,876 + CCNA_02996 0.50 +0.0
3,151,878 - CCNA_02996 0.50 +0.3
3,151,899 + CCNA_02996 0.52 -0.0
3,151,941 - CCNA_02996 0.55 +0.4
3,151,957 + CCNA_02996 0.57 +0.0
3,151,962 + CCNA_02996 0.57 +0.4
3,151,993 + CCNA_02996 0.60 -0.1
3,152,011 - CCNA_02996 0.61 +0.4
3,152,034 + CCNA_02996 0.63 -1.2
3,152,039 + CCNA_02996 0.63 -0.1
3,152,039 + CCNA_02996 0.63 -0.1
3,152,083 + CCNA_02996 0.67 +1.0
3,152,083 + CCNA_02996 0.67 +1.1
3,152,091 - CCNA_02996 0.68 +0.0
3,152,103 - CCNA_02996 0.69 -0.8
3,152,106 + CCNA_02996 0.69 -0.5
3,152,114 - CCNA_02996 0.70 +0.1
3,152,115 - CCNA_02996 0.70 -1.0
3,152,115 - CCNA_02996 0.70 +0.7
3,152,127 + CCNA_02996 0.71 -0.3
3,152,205 - CCNA_02996 0.77 -0.2
3,152,224 + CCNA_02996 0.79 +0.5
3,152,232 - CCNA_02996 0.80 +1.1
3,152,233 - CCNA_02996 0.80 -0.3
3,152,242 - CCNA_02996 0.80 -0.6
3,152,262 + CCNA_02996 0.82 -0.1
3,152,272 - CCNA_02996 0.83 +0.3
3,152,289 + CCNA_02996 0.84 +1.0
3,152,297 - CCNA_02996 0.85 -1.2
3,152,297 - CCNA_02996 0.85 +0.1
3,152,308 + CCNA_02996 0.86 -0.9
3,152,310 + CCNA_02996 0.86 +0.2
3,152,318 - CCNA_02996 0.87 -0.9
3,152,318 - CCNA_02996 0.87 -0.3
3,152,335 + CCNA_02996 0.88 +0.7
3,152,343 - CCNA_02996 0.89 -0.6
3,152,343 - CCNA_02996 0.89 -0.0
3,152,397 + +0.2
3,152,416 - -0.2
3,152,429 + -0.3
3,152,429 + +1.5
3,152,429 + -0.2
3,152,429 + -0.3
3,152,437 - -0.1
3,152,437 - +0.5
3,152,437 - -0.4
3,152,437 - +0.3
3,152,437 - -0.1
3,152,437 - +1.3
3,152,530 + +0.7
3,152,541 + +1.1
3,152,549 - -0.5
3,152,586 + +0.1
3,152,604 + +0.2
3,152,613 - +0.7
3,152,676 + CCNA_02997 0.33 -1.0
3,152,676 + CCNA_02997 0.33 +0.4
3,152,684 - CCNA_02997 0.37 +0.3
3,152,684 - CCNA_02997 0.37 +0.3
3,152,697 + CCNA_02997 0.43 +0.9
3,152,705 - CCNA_02997 0.47 +0.0
3,152,705 - CCNA_02997 0.47 +0.0
3,152,705 - CCNA_02997 0.47 +0.6
3,152,705 - CCNA_02997 0.47 +0.1
3,152,769 + CCNA_02997 0.77 -0.1
3,152,777 + CCNA_02997 0.81 -0.8
3,152,783 - CCNA_02997 0.84 -0.1
3,152,785 - CCNA_02997 0.85 +0.2
3,153,081 + -0.5
3,153,081 + -2.4
3,153,084 - +1.9
3,153,084 - +0.0
3,153,084 - -0.4
3,153,089 - -0.3
3,153,107 + -0.3
3,153,115 - +1.7
3,153,129 - -1.2
3,153,217 + CCNA_03904 0.29 +0.1
3,153,280 + CCNA_03904 0.67 -0.0
3,153,365 - +1.4
3,153,482 - +0.4
3,153,487 + +0.5
3,153,487 + +0.7
3,153,489 + +0.3
3,153,495 - -0.2
3,153,507 + +0.5
3,153,512 + +0.1
3,153,512 + +0.2
3,153,546 + +1.0
3,153,546 + -0.2
3,153,554 - +0.1
3,153,554 - -1.3
3,153,564 - -0.2
3,153,642 - CCNA_02999 0.18 +0.2
3,153,660 + CCNA_02999 0.21 -0.1
3,153,700 + CCNA_02999 0.26 +0.2
3,153,713 + CCNA_02999 0.27 +0.7
3,153,786 + CCNA_02999 0.37 +0.0
3,153,786 + CCNA_02999 0.37 +0.6

Or see this region's nucleotide sequence