Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02996 and CCNA_02997 are separated by 132 nucleotides CCNA_02997 and CCNA_03904 are separated by 352 nucleotides CCNA_03904 and CCNA_02999 are separated by 163 nucleotides
CCNA_02996: CCNA_02996 - patatin family phospholipase domain protein, at 3,151,281 to 3,152,474
_02996
CCNA_02997: CCNA_02997 - cold shock protein CspA, at 3,152,607 to 3,152,816
_02997
CCNA_03904: CCNA_03904 - hypothetical protein, at 3,153,169 to 3,153,333
_03904
CCNA_02999: CCNA_02999 - hypothetical protein, at 3,153,497 to 3,154,282
_02999
Position (kb)
3152
3153 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3151.637 kb on - strand, within CCNA_02996 at 3151.660 kb on + strand, within CCNA_02996 at 3151.670 kb on + strand, within CCNA_02996 at 3151.694 kb on - strand, within CCNA_02996 at 3151.699 kb on + strand, within CCNA_02996 at 3151.699 kb on + strand, within CCNA_02996 at 3151.758 kb on + strand, within CCNA_02996 at 3151.820 kb on - strand, within CCNA_02996 at 3151.867 kb on - strand, within CCNA_02996 at 3151.876 kb on + strand, within CCNA_02996 at 3151.878 kb on - strand, within CCNA_02996 at 3151.899 kb on + strand, within CCNA_02996 at 3151.941 kb on - strand, within CCNA_02996 at 3151.957 kb on + strand, within CCNA_02996 at 3151.962 kb on + strand, within CCNA_02996 at 3151.993 kb on + strand, within CCNA_02996 at 3152.011 kb on - strand, within CCNA_02996 at 3152.034 kb on + strand, within CCNA_02996 at 3152.039 kb on + strand, within CCNA_02996 at 3152.039 kb on + strand, within CCNA_02996 at 3152.083 kb on + strand, within CCNA_02996 at 3152.083 kb on + strand, within CCNA_02996 at 3152.091 kb on - strand, within CCNA_02996 at 3152.103 kb on - strand, within CCNA_02996 at 3152.106 kb on + strand, within CCNA_02996 at 3152.114 kb on - strand, within CCNA_02996 at 3152.115 kb on - strand, within CCNA_02996 at 3152.115 kb on - strand, within CCNA_02996 at 3152.127 kb on + strand, within CCNA_02996 at 3152.205 kb on - strand, within CCNA_02996 at 3152.224 kb on + strand, within CCNA_02996 at 3152.232 kb on - strand, within CCNA_02996 at 3152.233 kb on - strand, within CCNA_02996 at 3152.242 kb on - strand, within CCNA_02996 at 3152.262 kb on + strand, within CCNA_02996 at 3152.272 kb on - strand, within CCNA_02996 at 3152.289 kb on + strand, within CCNA_02996 at 3152.297 kb on - strand, within CCNA_02996 at 3152.297 kb on - strand, within CCNA_02996 at 3152.308 kb on + strand, within CCNA_02996 at 3152.310 kb on + strand, within CCNA_02996 at 3152.318 kb on - strand, within CCNA_02996 at 3152.318 kb on - strand, within CCNA_02996 at 3152.335 kb on + strand, within CCNA_02996 at 3152.343 kb on - strand, within CCNA_02996 at 3152.343 kb on - strand, within CCNA_02996 at 3152.397 kb on + strand at 3152.416 kb on - strand at 3152.429 kb on + strand at 3152.429 kb on + strand at 3152.429 kb on + strand at 3152.429 kb on + strand at 3152.437 kb on - strand at 3152.437 kb on - strand at 3152.437 kb on - strand at 3152.437 kb on - strand at 3152.437 kb on - strand at 3152.437 kb on - strand at 3152.530 kb on + strand at 3152.541 kb on + strand at 3152.549 kb on - strand at 3152.586 kb on + strand at 3152.604 kb on + strand at 3152.613 kb on - strand at 3152.676 kb on + strand, within CCNA_02997 at 3152.676 kb on + strand, within CCNA_02997 at 3152.684 kb on - strand, within CCNA_02997 at 3152.684 kb on - strand, within CCNA_02997 at 3152.697 kb on + strand, within CCNA_02997 at 3152.705 kb on - strand, within CCNA_02997 at 3152.705 kb on - strand, within CCNA_02997 at 3152.705 kb on - strand, within CCNA_02997 at 3152.705 kb on - strand, within CCNA_02997 at 3152.769 kb on + strand, within CCNA_02997 at 3152.777 kb on + strand, within CCNA_02997 at 3152.783 kb on - strand, within CCNA_02997 at 3152.785 kb on - strand, within CCNA_02997 at 3153.081 kb on + strand at 3153.081 kb on + strand at 3153.084 kb on - strand at 3153.084 kb on - strand at 3153.084 kb on - strand at 3153.089 kb on - strand at 3153.107 kb on + strand at 3153.115 kb on - strand at 3153.129 kb on - strand at 3153.217 kb on + strand, within CCNA_03904 at 3153.280 kb on + strand, within CCNA_03904 at 3153.365 kb on - strand at 3153.482 kb on - strand at 3153.487 kb on + strand at 3153.487 kb on + strand at 3153.489 kb on + strand at 3153.495 kb on - strand at 3153.507 kb on + strand at 3153.512 kb on + strand at 3153.512 kb on + strand at 3153.546 kb on + strand at 3153.546 kb on + strand at 3153.554 kb on - strand at 3153.554 kb on - strand at 3153.564 kb on - strand at 3153.642 kb on - strand, within CCNA_02999 at 3153.660 kb on + strand, within CCNA_02999 at 3153.700 kb on + strand, within CCNA_02999 at 3153.713 kb on + strand, within CCNA_02999 at 3153.786 kb on + strand, within CCNA_02999 at 3153.786 kb on + strand, within CCNA_02999
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,151,637 - CCNA_02996 0.30 +0.9 3,151,660 + CCNA_02996 0.32 -0.6 3,151,670 + CCNA_02996 0.33 +0.4 3,151,694 - CCNA_02996 0.35 +0.8 3,151,699 + CCNA_02996 0.35 -0.2 3,151,699 + CCNA_02996 0.35 -1.0 3,151,758 + CCNA_02996 0.40 +0.2 3,151,820 - CCNA_02996 0.45 +1.0 3,151,867 - CCNA_02996 0.49 -2.3 3,151,876 + CCNA_02996 0.50 +0.0 3,151,878 - CCNA_02996 0.50 +0.3 3,151,899 + CCNA_02996 0.52 -0.0 3,151,941 - CCNA_02996 0.55 +0.4 3,151,957 + CCNA_02996 0.57 +0.0 3,151,962 + CCNA_02996 0.57 +0.4 3,151,993 + CCNA_02996 0.60 -0.1 3,152,011 - CCNA_02996 0.61 +0.4 3,152,034 + CCNA_02996 0.63 -1.2 3,152,039 + CCNA_02996 0.63 -0.1 3,152,039 + CCNA_02996 0.63 -0.1 3,152,083 + CCNA_02996 0.67 +1.0 3,152,083 + CCNA_02996 0.67 +1.1 3,152,091 - CCNA_02996 0.68 +0.0 3,152,103 - CCNA_02996 0.69 -0.8 3,152,106 + CCNA_02996 0.69 -0.5 3,152,114 - CCNA_02996 0.70 +0.1 3,152,115 - CCNA_02996 0.70 -1.0 3,152,115 - CCNA_02996 0.70 +0.7 3,152,127 + CCNA_02996 0.71 -0.3 3,152,205 - CCNA_02996 0.77 -0.2 3,152,224 + CCNA_02996 0.79 +0.5 3,152,232 - CCNA_02996 0.80 +1.1 3,152,233 - CCNA_02996 0.80 -0.3 3,152,242 - CCNA_02996 0.80 -0.6 3,152,262 + CCNA_02996 0.82 -0.1 3,152,272 - CCNA_02996 0.83 +0.3 3,152,289 + CCNA_02996 0.84 +1.0 3,152,297 - CCNA_02996 0.85 -1.2 3,152,297 - CCNA_02996 0.85 +0.1 3,152,308 + CCNA_02996 0.86 -0.9 3,152,310 + CCNA_02996 0.86 +0.2 3,152,318 - CCNA_02996 0.87 -0.9 3,152,318 - CCNA_02996 0.87 -0.3 3,152,335 + CCNA_02996 0.88 +0.7 3,152,343 - CCNA_02996 0.89 -0.6 3,152,343 - CCNA_02996 0.89 -0.0 3,152,397 + +0.2 3,152,416 - -0.2 3,152,429 + -0.3 3,152,429 + +1.5 3,152,429 + -0.2 3,152,429 + -0.3 3,152,437 - -0.1 3,152,437 - +0.5 3,152,437 - -0.4 3,152,437 - +0.3 3,152,437 - -0.1 3,152,437 - +1.3 3,152,530 + +0.7 3,152,541 + +1.1 3,152,549 - -0.5 3,152,586 + +0.1 3,152,604 + +0.2 3,152,613 - +0.7 3,152,676 + CCNA_02997 0.33 -1.0 3,152,676 + CCNA_02997 0.33 +0.4 3,152,684 - CCNA_02997 0.37 +0.3 3,152,684 - CCNA_02997 0.37 +0.3 3,152,697 + CCNA_02997 0.43 +0.9 3,152,705 - CCNA_02997 0.47 +0.0 3,152,705 - CCNA_02997 0.47 +0.0 3,152,705 - CCNA_02997 0.47 +0.6 3,152,705 - CCNA_02997 0.47 +0.1 3,152,769 + CCNA_02997 0.77 -0.1 3,152,777 + CCNA_02997 0.81 -0.8 3,152,783 - CCNA_02997 0.84 -0.1 3,152,785 - CCNA_02997 0.85 +0.2 3,153,081 + -0.5 3,153,081 + -2.4 3,153,084 - +1.9 3,153,084 - +0.0 3,153,084 - -0.4 3,153,089 - -0.3 3,153,107 + -0.3 3,153,115 - +1.7 3,153,129 - -1.2 3,153,217 + CCNA_03904 0.29 +0.1 3,153,280 + CCNA_03904 0.67 -0.0 3,153,365 - +1.4 3,153,482 - +0.4 3,153,487 + +0.5 3,153,487 + +0.7 3,153,489 + +0.3 3,153,495 - -0.2 3,153,507 + +0.5 3,153,512 + +0.1 3,153,512 + +0.2 3,153,546 + +1.0 3,153,546 + -0.2 3,153,554 - +0.1 3,153,554 - -1.3 3,153,564 - -0.2 3,153,642 - CCNA_02999 0.18 +0.2 3,153,660 + CCNA_02999 0.21 -0.1 3,153,700 + CCNA_02999 0.26 +0.2 3,153,713 + CCNA_02999 0.27 +0.7 3,153,786 + CCNA_02999 0.37 +0.0 3,153,786 + CCNA_02999 0.37 +0.6
Or see this region's nucleotide sequence