Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02940 and CCNA_02941 are separated by 154 nucleotides CCNA_02941 and CCNA_02942 are separated by 113 nucleotides
CCNA_02940: CCNA_02940 - methyl-accepting chemotaxis protein, at 3,099,784 to 3,101,388
_02940
CCNA_02941: CCNA_02941 - transcription elongation factor greA, at 3,101,543 to 3,102,016
_02941
CCNA_02942: CCNA_02942 - nucleoside-diphosphate-sugar epimerase, at 3,102,130 to 3,103,299
_02942
Position (kb)
3101
3102
3103 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3100.544 kb on - strand, within CCNA_02940 at 3100.546 kb on - strand, within CCNA_02940 at 3100.546 kb on - strand, within CCNA_02940 at 3100.558 kb on + strand, within CCNA_02940 at 3100.560 kb on + strand, within CCNA_02940 at 3100.560 kb on + strand, within CCNA_02940 at 3100.560 kb on + strand, within CCNA_02940 at 3100.566 kb on - strand, within CCNA_02940 at 3100.614 kb on + strand, within CCNA_02940 at 3100.622 kb on - strand, within CCNA_02940 at 3100.642 kb on - strand, within CCNA_02940 at 3100.647 kb on - strand, within CCNA_02940 at 3100.691 kb on + strand, within CCNA_02940 at 3100.697 kb on + strand, within CCNA_02940 at 3100.697 kb on + strand, within CCNA_02940 at 3100.697 kb on + strand, within CCNA_02940 at 3100.701 kb on + strand, within CCNA_02940 at 3100.705 kb on - strand, within CCNA_02940 at 3100.851 kb on - strand, within CCNA_02940 at 3100.873 kb on - strand, within CCNA_02940 at 3100.924 kb on - strand, within CCNA_02940 at 3101.008 kb on + strand, within CCNA_02940 at 3101.009 kb on - strand, within CCNA_02940 at 3101.045 kb on + strand, within CCNA_02940 at 3101.068 kb on + strand, within CCNA_02940 at 3101.085 kb on - strand, within CCNA_02940 at 3101.089 kb on - strand, within CCNA_02940 at 3101.117 kb on + strand, within CCNA_02940 at 3101.155 kb on + strand, within CCNA_02940 at 3101.193 kb on + strand, within CCNA_02940 at 3101.193 kb on + strand, within CCNA_02940 at 3101.206 kb on + strand, within CCNA_02940 at 3101.214 kb on + strand, within CCNA_02940 at 3101.219 kb on - strand, within CCNA_02940 at 3101.231 kb on + strand at 3101.255 kb on + strand at 3101.266 kb on + strand at 3101.274 kb on - strand at 3101.274 kb on - strand at 3101.295 kb on - strand at 3101.317 kb on - strand at 3101.365 kb on - strand at 3101.383 kb on + strand at 3101.400 kb on + strand at 3101.427 kb on + strand at 3101.434 kb on - strand at 3101.761 kb on + strand, within CCNA_02941 at 3101.779 kb on + strand, within CCNA_02941 at 3102.059 kb on + strand at 3102.297 kb on - strand, within CCNA_02942 at 3102.301 kb on + strand, within CCNA_02942 at 3102.306 kb on + strand, within CCNA_02942 at 3102.358 kb on + strand, within CCNA_02942 at 3102.386 kb on + strand, within CCNA_02942 at 3102.391 kb on + strand, within CCNA_02942 at 3102.418 kb on + strand, within CCNA_02942 at 3102.444 kb on + strand, within CCNA_02942 at 3102.530 kb on + strand, within CCNA_02942 at 3102.584 kb on + strand, within CCNA_02942 at 3102.620 kb on - strand, within CCNA_02942 at 3102.633 kb on + strand, within CCNA_02942 at 3102.681 kb on + strand, within CCNA_02942 at 3102.681 kb on + strand, within CCNA_02942 at 3102.688 kb on + strand, within CCNA_02942 at 3102.791 kb on + strand, within CCNA_02942 at 3102.801 kb on - strand, within CCNA_02942 at 3102.837 kb on + strand, within CCNA_02942 at 3102.862 kb on + strand, within CCNA_02942 at 3102.986 kb on + strand, within CCNA_02942
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,100,544 - CCNA_02940 0.47 -0.1 3,100,546 - CCNA_02940 0.47 -0.8 3,100,546 - CCNA_02940 0.47 -0.5 3,100,558 + CCNA_02940 0.48 -0.1 3,100,560 + CCNA_02940 0.48 -0.1 3,100,560 + CCNA_02940 0.48 -0.7 3,100,560 + CCNA_02940 0.48 +0.9 3,100,566 - CCNA_02940 0.49 -0.1 3,100,614 + CCNA_02940 0.52 +1.3 3,100,622 - CCNA_02940 0.52 -0.1 3,100,642 - CCNA_02940 0.53 +0.1 3,100,647 - CCNA_02940 0.54 -0.8 3,100,691 + CCNA_02940 0.57 +1.1 3,100,697 + CCNA_02940 0.57 +0.0 3,100,697 + CCNA_02940 0.57 -0.3 3,100,697 + CCNA_02940 0.57 -0.2 3,100,701 + CCNA_02940 0.57 +2.0 3,100,705 - CCNA_02940 0.57 +0.3 3,100,851 - CCNA_02940 0.66 +2.3 3,100,873 - CCNA_02940 0.68 +0.6 3,100,924 - CCNA_02940 0.71 +0.2 3,101,008 + CCNA_02940 0.76 +0.9 3,101,009 - CCNA_02940 0.76 -1.6 3,101,045 + CCNA_02940 0.79 +0.5 3,101,068 + CCNA_02940 0.80 -0.4 3,101,085 - CCNA_02940 0.81 -0.6 3,101,089 - CCNA_02940 0.81 +1.0 3,101,117 + CCNA_02940 0.83 +1.7 3,101,155 + CCNA_02940 0.85 -0.2 3,101,193 + CCNA_02940 0.88 -1.0 3,101,193 + CCNA_02940 0.88 +0.5 3,101,206 + CCNA_02940 0.89 +0.0 3,101,214 + CCNA_02940 0.89 +0.2 3,101,219 - CCNA_02940 0.89 -0.1 3,101,231 + +0.5 3,101,255 + +0.3 3,101,266 + -0.1 3,101,274 - +0.3 3,101,274 - -1.1 3,101,295 - +0.9 3,101,317 - +0.8 3,101,365 - -0.1 3,101,383 + -0.0 3,101,400 + +1.0 3,101,427 + +0.8 3,101,434 - -0.3 3,101,761 + CCNA_02941 0.46 -0.8 3,101,779 + CCNA_02941 0.50 -2.2 3,102,059 + +0.9 3,102,297 - CCNA_02942 0.14 -1.9 3,102,301 + CCNA_02942 0.15 -0.5 3,102,306 + CCNA_02942 0.15 -0.6 3,102,358 + CCNA_02942 0.19 -0.1 3,102,386 + CCNA_02942 0.22 +0.4 3,102,391 + CCNA_02942 0.22 -1.0 3,102,418 + CCNA_02942 0.25 +0.0 3,102,444 + CCNA_02942 0.27 -0.1 3,102,530 + CCNA_02942 0.34 -2.3 3,102,584 + CCNA_02942 0.39 -0.3 3,102,620 - CCNA_02942 0.42 -0.6 3,102,633 + CCNA_02942 0.43 +0.7 3,102,681 + CCNA_02942 0.47 +0.4 3,102,681 + CCNA_02942 0.47 -1.8 3,102,688 + CCNA_02942 0.48 -1.8 3,102,791 + CCNA_02942 0.56 +0.4 3,102,801 - CCNA_02942 0.57 -0.3 3,102,837 + CCNA_02942 0.60 +1.4 3,102,862 + CCNA_02942 0.63 -0.4 3,102,986 + CCNA_02942 0.73 +0.2
Or see this region's nucleotide sequence