Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02848 and CCNA_02849 are separated by 154 nucleotides CCNA_02849 and CCNA_02850 overlap by 4 nucleotides
CCNA_02848: CCNA_02848 - heme chaperone-apocytochrome heme-lyase, at 3,000,851 to 3,002,833
_02848
CCNA_02849: CCNA_02849 - cytochrome c-type biogenesis heme chaperone, at 3,002,988 to 3,003,476
_02849
CCNA_02850: CCNA_02850 - cytochrome c-type biogenesis protein ccmI, at 3,003,473 to 3,004,585
_02850
Position (kb)
3002
3003
3004 Strain fitness (log2 ratio)
-2
-1
0
1 at 3002.041 kb on - strand, within CCNA_02848 at 3002.090 kb on - strand, within CCNA_02848 at 3002.174 kb on - strand, within CCNA_02848 at 3002.184 kb on - strand, within CCNA_02848 at 3002.339 kb on - strand, within CCNA_02848 at 3002.415 kb on + strand, within CCNA_02848 at 3002.423 kb on - strand, within CCNA_02848 at 3002.452 kb on - strand, within CCNA_02848 at 3002.520 kb on - strand, within CCNA_02848 at 3002.668 kb on - strand at 3002.838 kb on + strand at 3002.845 kb on + strand at 3002.923 kb on - strand at 3003.058 kb on + strand, within CCNA_02849 at 3003.066 kb on - strand, within CCNA_02849 at 3003.068 kb on - strand, within CCNA_02849 at 3003.225 kb on - strand, within CCNA_02849 at 3003.354 kb on - strand, within CCNA_02849 at 3003.486 kb on + strand at 3003.513 kb on + strand at 3003.521 kb on - strand at 3003.521 kb on - strand at 3003.534 kb on + strand at 3003.534 kb on + strand at 3003.534 kb on + strand at 3003.534 kb on + strand at 3003.542 kb on - strand at 3003.542 kb on - strand at 3003.542 kb on - strand at 3003.546 kb on + strand at 3003.546 kb on + strand at 3003.546 kb on + strand at 3003.546 kb on + strand at 3003.554 kb on - strand at 3003.554 kb on - strand at 3003.604 kb on + strand, within CCNA_02850 at 3003.609 kb on + strand, within CCNA_02850 at 3003.617 kb on - strand, within CCNA_02850 at 3003.617 kb on - strand, within CCNA_02850 at 3003.658 kb on + strand, within CCNA_02850 at 3003.678 kb on - strand, within CCNA_02850 at 3003.685 kb on - strand, within CCNA_02850 at 3003.749 kb on - strand, within CCNA_02850 at 3003.763 kb on + strand, within CCNA_02850 at 3003.832 kb on - strand, within CCNA_02850 at 3004.016 kb on - strand, within CCNA_02850 at 3004.044 kb on + strand, within CCNA_02850 at 3004.044 kb on + strand, within CCNA_02850 at 3004.044 kb on + strand, within CCNA_02850 at 3004.052 kb on - strand, within CCNA_02850 at 3004.052 kb on - strand, within CCNA_02850 at 3004.052 kb on - strand, within CCNA_02850 at 3004.052 kb on - strand, within CCNA_02850 at 3004.052 kb on - strand, within CCNA_02850 at 3004.052 kb on - strand, within CCNA_02850 at 3004.052 kb on - strand, within CCNA_02850 at 3004.052 kb on - strand, within CCNA_02850 at 3004.052 kb on - strand, within CCNA_02850 at 3004.052 kb on - strand, within CCNA_02850 at 3004.052 kb on - strand, within CCNA_02850 at 3004.052 kb on - strand, within CCNA_02850 at 3004.052 kb on - strand, within CCNA_02850 at 3004.052 kb on - strand, within CCNA_02850 at 3004.052 kb on - strand, within CCNA_02850 at 3004.052 kb on - strand, within CCNA_02850 at 3004.101 kb on + strand, within CCNA_02850 at 3004.102 kb on - strand, within CCNA_02850 at 3004.125 kb on + strand, within CCNA_02850 at 3004.132 kb on + strand, within CCNA_02850 at 3004.157 kb on - strand, within CCNA_02850 at 3004.161 kb on + strand, within CCNA_02850 at 3004.289 kb on + strand, within CCNA_02850 at 3004.297 kb on - strand, within CCNA_02850 at 3004.314 kb on + strand, within CCNA_02850 at 3004.355 kb on - strand, within CCNA_02850 at 3004.404 kb on - strand, within CCNA_02850 at 3004.427 kb on - strand, within CCNA_02850
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,002,041 - CCNA_02848 0.60 -0.7 3,002,090 - CCNA_02848 0.62 -0.4 3,002,174 - CCNA_02848 0.67 +1.0 3,002,184 - CCNA_02848 0.67 +0.8 3,002,339 - CCNA_02848 0.75 -0.9 3,002,415 + CCNA_02848 0.79 +0.8 3,002,423 - CCNA_02848 0.79 +0.8 3,002,452 - CCNA_02848 0.81 +0.8 3,002,520 - CCNA_02848 0.84 +0.2 3,002,668 - +0.2 3,002,838 + -2.7 3,002,845 + +1.0 3,002,923 - -0.0 3,003,058 + CCNA_02849 0.14 +0.2 3,003,066 - CCNA_02849 0.16 +0.9 3,003,068 - CCNA_02849 0.16 -0.6 3,003,225 - CCNA_02849 0.48 -0.7 3,003,354 - CCNA_02849 0.75 -0.9 3,003,486 + -0.3 3,003,513 + +1.2 3,003,521 - +0.3 3,003,521 - +0.7 3,003,534 + +0.3 3,003,534 + -0.7 3,003,534 + -1.0 3,003,534 + -0.6 3,003,542 - -0.5 3,003,542 - +0.3 3,003,542 - +0.4 3,003,546 + +0.1 3,003,546 + -0.2 3,003,546 + -0.3 3,003,546 + +0.4 3,003,554 - +0.1 3,003,554 - +0.3 3,003,604 + CCNA_02850 0.12 -0.5 3,003,609 + CCNA_02850 0.12 +0.3 3,003,617 - CCNA_02850 0.13 +0.3 3,003,617 - CCNA_02850 0.13 +0.6 3,003,658 + CCNA_02850 0.17 -1.8 3,003,678 - CCNA_02850 0.18 +0.5 3,003,685 - CCNA_02850 0.19 -1.4 3,003,749 - CCNA_02850 0.25 +0.4 3,003,763 + CCNA_02850 0.26 -0.3 3,003,832 - CCNA_02850 0.32 -0.8 3,004,016 - CCNA_02850 0.49 -0.1 3,004,044 + CCNA_02850 0.51 -0.1 3,004,044 + CCNA_02850 0.51 +0.4 3,004,044 + CCNA_02850 0.51 +0.9 3,004,052 - CCNA_02850 0.52 -0.6 3,004,052 - CCNA_02850 0.52 -0.6 3,004,052 - CCNA_02850 0.52 -1.2 3,004,052 - CCNA_02850 0.52 +0.5 3,004,052 - CCNA_02850 0.52 -1.1 3,004,052 - CCNA_02850 0.52 -0.0 3,004,052 - CCNA_02850 0.52 -0.2 3,004,052 - CCNA_02850 0.52 +0.4 3,004,052 - CCNA_02850 0.52 +0.3 3,004,052 - CCNA_02850 0.52 +0.5 3,004,052 - CCNA_02850 0.52 +1.1 3,004,052 - CCNA_02850 0.52 +1.1 3,004,052 - CCNA_02850 0.52 +0.1 3,004,052 - CCNA_02850 0.52 +0.2 3,004,052 - CCNA_02850 0.52 +1.2 3,004,052 - CCNA_02850 0.52 -0.2 3,004,101 + CCNA_02850 0.56 -1.3 3,004,102 - CCNA_02850 0.57 -0.4 3,004,125 + CCNA_02850 0.59 +0.1 3,004,132 + CCNA_02850 0.59 -1.8 3,004,157 - CCNA_02850 0.61 +0.9 3,004,161 + CCNA_02850 0.62 -0.1 3,004,289 + CCNA_02850 0.73 +0.4 3,004,297 - CCNA_02850 0.74 +0.8 3,004,314 + CCNA_02850 0.76 -0.8 3,004,355 - CCNA_02850 0.79 +0.3 3,004,404 - CCNA_02850 0.84 -0.7 3,004,427 - CCNA_02850 0.86 +0.8
Or see this region's nucleotide sequence