Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02846 and CCNA_02847 are separated by 179 nucleotides CCNA_02847 and CCNA_02848 overlap by 4 nucleotides
CCNA_02846: CCNA_02846 - DegP/HtrA-family serine protease, at 2,998,630 to 3,000,222
_02846
CCNA_02847: CCNA_02847 - cytochrome c-type biogenesis protein ccmH, at 3,000,402 to 3,000,854
_02847
CCNA_02848: CCNA_02848 - heme chaperone-apocytochrome heme-lyase, at 3,000,851 to 3,002,833
_02848
Position (kb)
3000
3001 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2999.467 kb on + strand, within CCNA_02846 at 2999.482 kb on + strand, within CCNA_02846 at 2999.508 kb on + strand, within CCNA_02846 at 2999.521 kb on - strand, within CCNA_02846 at 2999.566 kb on + strand, within CCNA_02846 at 2999.571 kb on + strand, within CCNA_02846 at 2999.642 kb on + strand, within CCNA_02846 at 2999.650 kb on + strand, within CCNA_02846 at 2999.652 kb on - strand, within CCNA_02846 at 2999.657 kb on + strand, within CCNA_02846 at 2999.657 kb on + strand, within CCNA_02846 at 2999.659 kb on - strand, within CCNA_02846 at 2999.663 kb on + strand, within CCNA_02846 at 2999.677 kb on - strand, within CCNA_02846 at 2999.696 kb on - strand, within CCNA_02846 at 2999.702 kb on - strand, within CCNA_02846 at 2999.714 kb on - strand, within CCNA_02846 at 2999.721 kb on + strand, within CCNA_02846 at 2999.754 kb on - strand, within CCNA_02846 at 2999.756 kb on + strand, within CCNA_02846 at 2999.807 kb on - strand, within CCNA_02846 at 2999.952 kb on + strand, within CCNA_02846 at 2999.952 kb on + strand, within CCNA_02846 at 3000.001 kb on - strand, within CCNA_02846 at 3000.006 kb on - strand, within CCNA_02846 at 3000.006 kb on - strand, within CCNA_02846 at 3000.104 kb on + strand at 3000.117 kb on - strand at 3000.164 kb on - strand at 3000.259 kb on + strand at 3000.267 kb on - strand at 3000.267 kb on - strand at 3000.290 kb on + strand at 3000.329 kb on - strand at 3000.329 kb on - strand at 3000.417 kb on - strand at 3000.419 kb on + strand at 3000.634 kb on + strand, within CCNA_02847 at 3000.642 kb on - strand, within CCNA_02847 at 3000.642 kb on - strand, within CCNA_02847 at 3000.642 kb on - strand, within CCNA_02847 at 3000.642 kb on - strand, within CCNA_02847 at 3000.642 kb on - strand, within CCNA_02847 at 3000.642 kb on - strand, within CCNA_02847 at 3000.730 kb on + strand, within CCNA_02847 at 3000.738 kb on - strand, within CCNA_02847 at 3000.738 kb on - strand, within CCNA_02847 at 3000.738 kb on - strand, within CCNA_02847 at 3000.738 kb on - strand, within CCNA_02847 at 3000.738 kb on - strand, within CCNA_02847 at 3000.738 kb on - strand, within CCNA_02847 at 3000.738 kb on - strand, within CCNA_02847 at 3000.738 kb on - strand, within CCNA_02847 at 3000.738 kb on - strand, within CCNA_02847 at 3000.738 kb on - strand, within CCNA_02847 at 3000.740 kb on - strand, within CCNA_02847 at 3000.836 kb on - strand at 3000.836 kb on - strand at 3000.836 kb on - strand at 3000.846 kb on - strand at 3001.007 kb on + strand at 3001.030 kb on - strand at 3001.345 kb on - strand, within CCNA_02848 at 3001.421 kb on - strand, within CCNA_02848 at 3001.492 kb on - strand, within CCNA_02848 at 3001.697 kb on - strand, within CCNA_02848 at 3001.705 kb on - strand, within CCNA_02848
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,999,467 + CCNA_02846 0.53 -1.4 2,999,482 + CCNA_02846 0.53 +1.4 2,999,508 + CCNA_02846 0.55 -1.9 2,999,521 - CCNA_02846 0.56 -1.9 2,999,566 + CCNA_02846 0.59 +0.3 2,999,571 + CCNA_02846 0.59 +0.2 2,999,642 + CCNA_02846 0.64 +0.1 2,999,650 + CCNA_02846 0.64 +0.2 2,999,652 - CCNA_02846 0.64 -0.2 2,999,657 + CCNA_02846 0.64 +0.2 2,999,657 + CCNA_02846 0.64 -1.5 2,999,659 - CCNA_02846 0.65 +0.4 2,999,663 + CCNA_02846 0.65 -1.7 2,999,677 - CCNA_02846 0.66 +0.1 2,999,696 - CCNA_02846 0.67 -0.6 2,999,702 - CCNA_02846 0.67 +0.5 2,999,714 - CCNA_02846 0.68 +0.3 2,999,721 + CCNA_02846 0.68 +2.4 2,999,754 - CCNA_02846 0.71 -0.3 2,999,756 + CCNA_02846 0.71 -0.0 2,999,807 - CCNA_02846 0.74 +0.5 2,999,952 + CCNA_02846 0.83 +0.2 2,999,952 + CCNA_02846 0.83 +0.8 3,000,001 - CCNA_02846 0.86 +0.9 3,000,006 - CCNA_02846 0.86 +0.6 3,000,006 - CCNA_02846 0.86 +0.2 3,000,104 + -1.2 3,000,117 - +0.1 3,000,164 - +0.5 3,000,259 + -1.1 3,000,267 - -0.3 3,000,267 - +0.6 3,000,290 + -1.3 3,000,329 - +0.1 3,000,329 - +1.2 3,000,417 - +1.0 3,000,419 + -3.0 3,000,634 + CCNA_02847 0.51 -1.6 3,000,642 - CCNA_02847 0.53 +0.2 3,000,642 - CCNA_02847 0.53 +0.2 3,000,642 - CCNA_02847 0.53 +0.4 3,000,642 - CCNA_02847 0.53 +1.3 3,000,642 - CCNA_02847 0.53 -1.5 3,000,642 - CCNA_02847 0.53 +1.7 3,000,730 + CCNA_02847 0.72 +0.8 3,000,738 - CCNA_02847 0.74 +1.2 3,000,738 - CCNA_02847 0.74 -0.6 3,000,738 - CCNA_02847 0.74 -0.8 3,000,738 - CCNA_02847 0.74 -0.8 3,000,738 - CCNA_02847 0.74 -0.9 3,000,738 - CCNA_02847 0.74 -0.0 3,000,738 - CCNA_02847 0.74 +0.4 3,000,738 - CCNA_02847 0.74 +0.8 3,000,738 - CCNA_02847 0.74 -1.0 3,000,738 - CCNA_02847 0.74 -1.0 3,000,740 - CCNA_02847 0.75 -0.0 3,000,836 - -0.6 3,000,836 - -0.2 3,000,836 - +0.4 3,000,846 - +0.6 3,001,007 + -0.7 3,001,030 - +0.8 3,001,345 - CCNA_02848 0.25 +0.7 3,001,421 - CCNA_02848 0.29 -0.2 3,001,492 - CCNA_02848 0.32 +0.3 3,001,697 - CCNA_02848 0.43 +0.9 3,001,705 - CCNA_02848 0.43 -0.6
Or see this region's nucleotide sequence