Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02756 and CCNA_02757 are separated by 154 nucleotides CCNA_02757 and CCNA_02758 are separated by 57 nucleotides CCNA_02758 and CCNA_02759 are separated by 152 nucleotides
CCNA_02756: CCNA_02756 - competence/damage-inducible protein CinA, at 2,920,073 to 2,920,831
_02756
CCNA_02757: CCNA_02757 - sugar fermentation stimulation protein A, at 2,920,986 to 2,921,705
_02757
CCNA_02758: CCNA_02758 - hypothetical protein, at 2,921,763 to 2,922,152
_02758
CCNA_02759: CCNA_02759 - methionine aminopeptidase, at 2,922,305 to 2,923,135
_02759
Position (kb)
2921
2922
2923 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2920.766 kb on - strand at 2920.775 kb on + strand at 2920.835 kb on - strand at 2920.852 kb on + strand at 2920.859 kb on + strand at 2920.867 kb on - strand at 2920.869 kb on + strand at 2920.869 kb on + strand at 2920.869 kb on + strand at 2920.869 kb on + strand at 2920.869 kb on + strand at 2920.869 kb on + strand at 2920.869 kb on + strand at 2920.875 kb on + strand at 2920.877 kb on - strand at 2920.877 kb on - strand at 2920.877 kb on - strand at 2920.878 kb on - strand at 2920.881 kb on + strand at 2920.883 kb on - strand at 2920.966 kb on - strand at 2920.966 kb on - strand at 2920.968 kb on + strand at 2920.972 kb on + strand at 2920.972 kb on + strand at 2920.972 kb on + strand at 2920.973 kb on + strand at 2921.011 kb on + strand at 2921.014 kb on - strand at 2921.016 kb on + strand at 2921.024 kb on - strand at 2921.024 kb on - strand at 2921.024 kb on - strand at 2921.039 kb on + strand at 2921.050 kb on + strand at 2921.072 kb on + strand, within CCNA_02757 at 2921.080 kb on - strand, within CCNA_02757 at 2921.089 kb on + strand, within CCNA_02757 at 2921.089 kb on + strand, within CCNA_02757 at 2921.097 kb on - strand, within CCNA_02757 at 2921.127 kb on + strand, within CCNA_02757 at 2921.127 kb on + strand, within CCNA_02757 at 2921.127 kb on + strand, within CCNA_02757 at 2921.127 kb on + strand, within CCNA_02757 at 2921.135 kb on - strand, within CCNA_02757 at 2921.135 kb on - strand, within CCNA_02757 at 2921.135 kb on - strand, within CCNA_02757 at 2921.135 kb on - strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.213 kb on + strand, within CCNA_02757 at 2921.213 kb on + strand, within CCNA_02757 at 2921.213 kb on + strand, within CCNA_02757 at 2921.221 kb on - strand, within CCNA_02757 at 2921.227 kb on - strand, within CCNA_02757 at 2921.232 kb on - strand, within CCNA_02757 at 2921.255 kb on + strand, within CCNA_02757 at 2921.305 kb on + strand, within CCNA_02757 at 2921.313 kb on + strand, within CCNA_02757 at 2921.341 kb on + strand, within CCNA_02757 at 2921.354 kb on - strand, within CCNA_02757 at 2921.377 kb on + strand, within CCNA_02757 at 2921.384 kb on + strand, within CCNA_02757 at 2921.392 kb on - strand, within CCNA_02757 at 2921.410 kb on + strand, within CCNA_02757 at 2921.418 kb on - strand, within CCNA_02757 at 2921.435 kb on + strand, within CCNA_02757 at 2921.435 kb on + strand, within CCNA_02757 at 2921.443 kb on - strand, within CCNA_02757 at 2921.447 kb on + strand, within CCNA_02757 at 2921.447 kb on + strand, within CCNA_02757 at 2921.483 kb on + strand, within CCNA_02757 at 2921.491 kb on - strand, within CCNA_02757 at 2921.505 kb on + strand, within CCNA_02757 at 2921.526 kb on + strand, within CCNA_02757 at 2921.531 kb on + strand, within CCNA_02757 at 2921.559 kb on + strand, within CCNA_02757 at 2921.585 kb on + strand, within CCNA_02757 at 2921.603 kb on + strand, within CCNA_02757 at 2921.608 kb on + strand, within CCNA_02757 at 2921.616 kb on - strand, within CCNA_02757 at 2921.624 kb on - strand, within CCNA_02757 at 2921.624 kb on - strand, within CCNA_02757 at 2921.629 kb on - strand, within CCNA_02757 at 2921.699 kb on + strand at 2921.699 kb on + strand at 2921.725 kb on + strand at 2921.733 kb on - strand at 2921.761 kb on + strand at 2921.770 kb on + strand at 2921.773 kb on - strand at 2921.799 kb on - strand at 2921.916 kb on + strand, within CCNA_02758 at 2921.917 kb on + strand, within CCNA_02758 at 2921.937 kb on - strand, within CCNA_02758 at 2921.950 kb on - strand, within CCNA_02758 at 2921.957 kb on + strand, within CCNA_02758 at 2921.963 kb on + strand, within CCNA_02758 at 2922.028 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.049 kb on - strand, within CCNA_02758 at 2922.049 kb on - strand, within CCNA_02758 at 2922.049 kb on - strand, within CCNA_02758 at 2922.056 kb on - strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.154 kb on + strand at 2922.154 kb on + strand at 2922.154 kb on + strand at 2922.159 kb on + strand at 2922.161 kb on + strand at 2922.162 kb on - strand at 2922.243 kb on + strand at 2922.243 kb on + strand at 2922.251 kb on - strand at 2922.263 kb on + strand at 2922.268 kb on + strand at 2922.350 kb on + strand at 2922.350 kb on + strand at 2922.350 kb on + strand at 2922.363 kb on - strand at 2922.363 kb on - strand at 2922.363 kb on - strand at 2922.364 kb on + strand at 2922.364 kb on + strand at 2922.364 kb on + strand at 2922.364 kb on + strand at 2922.372 kb on - strand at 2922.372 kb on - strand at 2922.379 kb on + strand at 2923.108 kb on + strand at 2923.116 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,920,766 - +0.8 2,920,775 + -0.1 2,920,835 - -0.4 2,920,852 + -0.7 2,920,859 + +1.0 2,920,867 - -0.0 2,920,869 + +0.3 2,920,869 + +0.2 2,920,869 + -0.5 2,920,869 + -0.4 2,920,869 + +1.5 2,920,869 + -0.4 2,920,869 + +1.0 2,920,875 + -0.5 2,920,877 - -0.2 2,920,877 - -0.9 2,920,877 - -0.6 2,920,878 - +0.2 2,920,881 + -0.3 2,920,883 - -0.4 2,920,966 - +0.3 2,920,966 - +0.1 2,920,968 + -2.9 2,920,972 + -1.9 2,920,972 + -0.1 2,920,972 + +0.2 2,920,973 + -0.2 2,921,011 + -0.2 2,921,014 - -0.8 2,921,016 + -0.6 2,921,024 - -0.7 2,921,024 - -0.0 2,921,024 - +0.3 2,921,039 + +1.1 2,921,050 + -0.1 2,921,072 + CCNA_02757 0.12 -0.5 2,921,080 - CCNA_02757 0.13 +0.9 2,921,089 + CCNA_02757 0.14 -0.7 2,921,089 + CCNA_02757 0.14 +0.3 2,921,097 - CCNA_02757 0.15 -0.1 2,921,127 + CCNA_02757 0.20 +0.2 2,921,127 + CCNA_02757 0.20 +0.1 2,921,127 + CCNA_02757 0.20 -0.5 2,921,127 + CCNA_02757 0.20 +0.6 2,921,135 - CCNA_02757 0.21 +0.3 2,921,135 - CCNA_02757 0.21 +0.4 2,921,135 - CCNA_02757 0.21 +0.4 2,921,135 - CCNA_02757 0.21 -1.1 2,921,174 + CCNA_02757 0.26 -0.4 2,921,174 + CCNA_02757 0.26 -1.4 2,921,174 + CCNA_02757 0.26 -0.3 2,921,174 + CCNA_02757 0.26 -0.0 2,921,174 + CCNA_02757 0.26 -0.5 2,921,174 + CCNA_02757 0.26 +0.2 2,921,174 + CCNA_02757 0.26 +0.0 2,921,174 + CCNA_02757 0.26 +0.2 2,921,174 + CCNA_02757 0.26 -0.2 2,921,174 + CCNA_02757 0.26 -0.6 2,921,174 + CCNA_02757 0.26 +0.5 2,921,174 + CCNA_02757 0.26 -0.0 2,921,174 + CCNA_02757 0.26 -0.7 2,921,182 - CCNA_02757 0.27 +0.2 2,921,182 - CCNA_02757 0.27 +0.6 2,921,182 - CCNA_02757 0.27 +0.8 2,921,182 - CCNA_02757 0.27 -0.0 2,921,182 - CCNA_02757 0.27 -1.0 2,921,182 - CCNA_02757 0.27 -0.7 2,921,182 - CCNA_02757 0.27 -0.5 2,921,182 - CCNA_02757 0.27 +0.5 2,921,182 - CCNA_02757 0.27 -0.3 2,921,182 - CCNA_02757 0.27 +0.1 2,921,182 - CCNA_02757 0.27 -0.5 2,921,182 - CCNA_02757 0.27 +0.6 2,921,182 - CCNA_02757 0.27 -0.8 2,921,182 - CCNA_02757 0.27 -0.3 2,921,182 - CCNA_02757 0.27 +1.1 2,921,182 - CCNA_02757 0.27 +2.1 2,921,182 - CCNA_02757 0.27 -0.9 2,921,182 - CCNA_02757 0.27 +1.0 2,921,182 - CCNA_02757 0.27 +0.7 2,921,213 + CCNA_02757 0.32 +1.1 2,921,213 + CCNA_02757 0.32 +0.6 2,921,213 + CCNA_02757 0.32 -0.5 2,921,221 - CCNA_02757 0.33 +0.4 2,921,227 - CCNA_02757 0.33 -1.5 2,921,232 - CCNA_02757 0.34 -0.5 2,921,255 + CCNA_02757 0.37 -0.4 2,921,305 + CCNA_02757 0.44 +0.0 2,921,313 + CCNA_02757 0.45 +0.2 2,921,341 + CCNA_02757 0.49 -0.1 2,921,354 - CCNA_02757 0.51 -1.0 2,921,377 + CCNA_02757 0.54 +0.6 2,921,384 + CCNA_02757 0.55 -0.7 2,921,392 - CCNA_02757 0.56 +0.7 2,921,410 + CCNA_02757 0.59 +1.6 2,921,418 - CCNA_02757 0.60 -0.2 2,921,435 + CCNA_02757 0.62 -0.2 2,921,435 + CCNA_02757 0.62 +0.2 2,921,443 - CCNA_02757 0.63 -0.8 2,921,447 + CCNA_02757 0.64 +0.0 2,921,447 + CCNA_02757 0.64 +0.9 2,921,483 + CCNA_02757 0.69 -0.3 2,921,491 - CCNA_02757 0.70 -0.9 2,921,505 + CCNA_02757 0.72 -1.6 2,921,526 + CCNA_02757 0.75 +0.8 2,921,531 + CCNA_02757 0.76 +0.0 2,921,559 + CCNA_02757 0.80 -0.1 2,921,585 + CCNA_02757 0.83 -0.1 2,921,603 + CCNA_02757 0.86 -0.3 2,921,608 + CCNA_02757 0.86 -1.2 2,921,616 - CCNA_02757 0.88 -0.0 2,921,624 - CCNA_02757 0.89 -0.1 2,921,624 - CCNA_02757 0.89 -0.9 2,921,629 - CCNA_02757 0.89 -0.7 2,921,699 + -0.6 2,921,699 + +1.2 2,921,725 + +0.2 2,921,733 - +0.1 2,921,761 + +0.2 2,921,770 + +0.9 2,921,773 - +1.8 2,921,799 - -1.8 2,921,916 + CCNA_02758 0.39 -0.6 2,921,917 + CCNA_02758 0.39 -0.2 2,921,937 - CCNA_02758 0.45 +0.8 2,921,950 - CCNA_02758 0.48 -0.1 2,921,957 + CCNA_02758 0.50 +0.9 2,921,963 + CCNA_02758 0.51 +0.4 2,922,028 + CCNA_02758 0.68 +0.1 2,922,041 + CCNA_02758 0.71 -0.9 2,922,041 + CCNA_02758 0.71 +1.7 2,922,041 + CCNA_02758 0.71 -0.5 2,922,041 + CCNA_02758 0.71 +0.1 2,922,049 - CCNA_02758 0.73 +0.0 2,922,049 - CCNA_02758 0.73 -0.5 2,922,049 - CCNA_02758 0.73 -1.2 2,922,056 - CCNA_02758 0.75 -0.5 2,922,074 + CCNA_02758 0.80 -0.7 2,922,074 + CCNA_02758 0.80 +0.5 2,922,074 + CCNA_02758 0.80 +0.5 2,922,074 + CCNA_02758 0.80 -0.3 2,922,074 + CCNA_02758 0.80 -1.5 2,922,074 + CCNA_02758 0.80 +0.5 2,922,074 + CCNA_02758 0.80 +0.1 2,922,082 - CCNA_02758 0.82 -0.3 2,922,082 - CCNA_02758 0.82 +1.5 2,922,082 - CCNA_02758 0.82 +0.1 2,922,082 - CCNA_02758 0.82 -0.8 2,922,082 - CCNA_02758 0.82 -0.1 2,922,154 + +0.2 2,922,154 + +0.5 2,922,154 + -0.5 2,922,159 + -0.7 2,922,161 + -0.1 2,922,162 - -1.0 2,922,243 + -1.5 2,922,243 + +0.7 2,922,251 - -0.0 2,922,263 + +0.5 2,922,268 + +0.2 2,922,350 + +0.9 2,922,350 + +0.8 2,922,350 + +0.2 2,922,363 - +0.2 2,922,363 - -0.4 2,922,363 - -0.4 2,922,364 + +0.1 2,922,364 + +0.5 2,922,364 + +0.3 2,922,364 + +0.7 2,922,372 - -0.5 2,922,372 - -0.5 2,922,379 + +0.2 2,923,108 + +0.9 2,923,116 - -0.7
Or see this region's nucleotide sequence