Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02732

Experiment: PYE no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02730 and CCNA_02731 overlap by 4 nucleotidesCCNA_02731 and CCNA_02732 are separated by 115 nucleotidesCCNA_02732 and CCNA_02733 are separated by 260 nucleotides CCNA_02730: CCNA_02730 - glutathione S-transferase, at 2,893,514 to 2,894,161 _02730 CCNA_02731: CCNA_02731 - acetyltransferase, at 2,894,158 to 2,894,847 _02731 CCNA_02732: CCNA_02732 - hypothetical protein, at 2,894,963 to 2,895,169 _02732 CCNA_02733: CCNA_02733 - glutaminyl-peptide cyclotransferase, at 2,895,430 to 2,896,212 _02733 Position (kb) 2894 2895 2896Strain fitness (log2 ratio) -2 -1 0 1 2at 2894.012 kb on + strand, within CCNA_02730at 2894.034 kb on - strand, within CCNA_02730at 2894.058 kb on - strand, within CCNA_02730at 2894.079 kb on - strand, within CCNA_02730at 2894.085 kb on - strand, within CCNA_02730at 2894.122 kb on - strandat 2894.152 kb on + strandat 2894.155 kb on + strandat 2894.163 kb on - strandat 2894.188 kb on + strandat 2894.210 kb on - strandat 2894.258 kb on - strand, within CCNA_02731at 2894.324 kb on + strand, within CCNA_02731at 2894.324 kb on + strand, within CCNA_02731at 2894.324 kb on + strand, within CCNA_02731at 2894.324 kb on + strand, within CCNA_02731at 2894.332 kb on - strand, within CCNA_02731at 2894.351 kb on - strand, within CCNA_02731at 2894.363 kb on + strand, within CCNA_02731at 2894.373 kb on + strand, within CCNA_02731at 2894.375 kb on + strand, within CCNA_02731at 2894.381 kb on - strand, within CCNA_02731at 2894.381 kb on - strand, within CCNA_02731at 2894.381 kb on - strand, within CCNA_02731at 2894.381 kb on - strand, within CCNA_02731at 2894.383 kb on - strand, within CCNA_02731at 2894.383 kb on - strand, within CCNA_02731at 2894.408 kb on + strand, within CCNA_02731at 2894.430 kb on + strand, within CCNA_02731at 2894.448 kb on - strand, within CCNA_02731at 2894.462 kb on - strand, within CCNA_02731at 2894.491 kb on - strand, within CCNA_02731at 2894.491 kb on - strand, within CCNA_02731at 2894.544 kb on - strand, within CCNA_02731at 2894.572 kb on + strand, within CCNA_02731at 2894.603 kb on + strand, within CCNA_02731at 2894.616 kb on + strand, within CCNA_02731at 2894.666 kb on + strand, within CCNA_02731at 2894.688 kb on - strand, within CCNA_02731at 2894.717 kb on + strand, within CCNA_02731at 2894.730 kb on - strand, within CCNA_02731at 2894.730 kb on - strand, within CCNA_02731at 2894.737 kb on - strand, within CCNA_02731at 2894.755 kb on + strand, within CCNA_02731at 2894.763 kb on - strand, within CCNA_02731at 2894.808 kb on + strandat 2894.821 kb on - strandat 2894.835 kb on + strandat 2894.835 kb on + strandat 2894.851 kb on - strandat 2894.863 kb on + strandat 2894.887 kb on + strandat 2894.908 kb on + strandat 2894.910 kb on - strandat 2894.960 kb on + strandat 2894.965 kb on + strandat 2894.974 kb on - strandat 2895.012 kb on + strand, within CCNA_02732at 2895.024 kb on + strand, within CCNA_02732at 2895.107 kb on - strand, within CCNA_02732at 2895.116 kb on + strand, within CCNA_02732at 2895.164 kb on - strandat 2895.179 kb on - strandat 2895.256 kb on - strandat 2895.272 kb on - strandat 2895.297 kb on - strandat 2895.307 kb on - strandat 2895.307 kb on - strandat 2895.314 kb on + strandat 2895.322 kb on - strandat 2895.350 kb on - strandat 2895.383 kb on + strandat 2895.383 kb on - strandat 2895.462 kb on + strandat 2895.467 kb on + strandat 2895.467 kb on + strandat 2895.470 kb on - strandat 2895.475 kb on - strandat 2895.475 kb on - strandat 2895.516 kb on - strand, within CCNA_02733at 2895.523 kb on + strand, within CCNA_02733at 2895.531 kb on - strand, within CCNA_02733at 2895.531 kb on - strand, within CCNA_02733at 2895.531 kb on - strand, within CCNA_02733at 2895.591 kb on - strand, within CCNA_02733at 2895.592 kb on - strand, within CCNA_02733at 2895.611 kb on + strand, within CCNA_02733at 2895.647 kb on - strand, within CCNA_02733at 2895.649 kb on + strand, within CCNA_02733at 2895.670 kb on - strand, within CCNA_02733at 2895.670 kb on - strand, within CCNA_02733at 2895.670 kb on - strand, within CCNA_02733at 2895.681 kb on - strand, within CCNA_02733at 2895.688 kb on - strand, within CCNA_02733at 2895.771 kb on - strand, within CCNA_02733at 2895.815 kb on + strand, within CCNA_02733at 2895.816 kb on - strand, within CCNA_02733at 2895.816 kb on - strand, within CCNA_02733at 2895.816 kb on - strand, within CCNA_02733at 2895.823 kb on - strand, within CCNA_02733at 2895.833 kb on + strand, within CCNA_02733at 2895.893 kb on + strand, within CCNA_02733at 2895.893 kb on + strand, within CCNA_02733at 2895.893 kb on + strand, within CCNA_02733at 2895.893 kb on + strand, within CCNA_02733at 2895.893 kb on + strand, within CCNA_02733at 2895.893 kb on + strand, within CCNA_02733at 2895.893 kb on + strand, within CCNA_02733at 2895.893 kb on + strand, within CCNA_02733at 2895.901 kb on - strand, within CCNA_02733at 2895.901 kb on - strand, within CCNA_02733at 2895.901 kb on - strand, within CCNA_02733at 2895.901 kb on - strand, within CCNA_02733at 2895.936 kb on - strand, within CCNA_02733at 2895.979 kb on - strand, within CCNA_02733at 2896.016 kb on + strand, within CCNA_02733at 2896.021 kb on + strand, within CCNA_02733at 2896.021 kb on + strand, within CCNA_02733at 2896.029 kb on - strand, within CCNA_02733at 2896.029 kb on - strand, within CCNA_02733at 2896.029 kb on - strand, within CCNA_02733at 2896.036 kb on - strand, within CCNA_02733at 2896.063 kb on - strand, within CCNA_02733at 2896.065 kb on + strand, within CCNA_02733at 2896.088 kb on - strand, within CCNA_02733at 2896.088 kb on - strand, within CCNA_02733at 2896.102 kb on + strand, within CCNA_02733at 2896.117 kb on - strand, within CCNA_02733

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
remove
2,894,012 + CCNA_02730 0.77 -0.3
2,894,034 - CCNA_02730 0.80 +0.0
2,894,058 - CCNA_02730 0.84 -0.7
2,894,079 - CCNA_02730 0.87 -0.8
2,894,085 - CCNA_02730 0.88 +1.2
2,894,122 - -0.2
2,894,152 + +0.1
2,894,155 + +0.3
2,894,163 - +0.1
2,894,188 + +0.4
2,894,210 - +0.6
2,894,258 - CCNA_02731 0.14 +1.1
2,894,324 + CCNA_02731 0.24 +0.3
2,894,324 + CCNA_02731 0.24 +1.0
2,894,324 + CCNA_02731 0.24 -1.4
2,894,324 + CCNA_02731 0.24 -0.1
2,894,332 - CCNA_02731 0.25 -0.3
2,894,351 - CCNA_02731 0.28 -0.6
2,894,363 + CCNA_02731 0.30 +1.0
2,894,373 + CCNA_02731 0.31 +0.2
2,894,375 + CCNA_02731 0.31 -0.3
2,894,381 - CCNA_02731 0.32 +0.2
2,894,381 - CCNA_02731 0.32 +1.0
2,894,381 - CCNA_02731 0.32 +0.3
2,894,381 - CCNA_02731 0.32 +1.1
2,894,383 - CCNA_02731 0.33 +1.2
2,894,383 - CCNA_02731 0.33 -0.0
2,894,408 + CCNA_02731 0.36 +0.8
2,894,430 + CCNA_02731 0.39 +0.4
2,894,448 - CCNA_02731 0.42 +0.5
2,894,462 - CCNA_02731 0.44 +0.5
2,894,491 - CCNA_02731 0.48 +0.1
2,894,491 - CCNA_02731 0.48 +0.5
2,894,544 - CCNA_02731 0.56 +0.4
2,894,572 + CCNA_02731 0.60 -0.1
2,894,603 + CCNA_02731 0.64 -0.0
2,894,616 + CCNA_02731 0.66 +0.2
2,894,666 + CCNA_02731 0.74 -0.5
2,894,688 - CCNA_02731 0.77 -2.0
2,894,717 + CCNA_02731 0.81 -0.2
2,894,730 - CCNA_02731 0.83 +0.2
2,894,730 - CCNA_02731 0.83 +0.2
2,894,737 - CCNA_02731 0.84 +0.7
2,894,755 + CCNA_02731 0.87 -1.3
2,894,763 - CCNA_02731 0.88 -0.0
2,894,808 + +1.1
2,894,821 - +0.0
2,894,835 + -0.5
2,894,835 + -0.4
2,894,851 - +0.2
2,894,863 + +0.6
2,894,887 + -1.1
2,894,908 + +0.6
2,894,910 - +0.5
2,894,960 + +1.8
2,894,965 + +0.5
2,894,974 - +0.2
2,895,012 + CCNA_02732 0.24 -0.0
2,895,024 + CCNA_02732 0.29 -0.5
2,895,107 - CCNA_02732 0.70 +0.2
2,895,116 + CCNA_02732 0.74 +0.7
2,895,164 - +0.3
2,895,179 - +0.1
2,895,256 - +0.6
2,895,272 - +0.1
2,895,297 - +0.4
2,895,307 - -0.3
2,895,307 - -0.9
2,895,314 + +0.3
2,895,322 - -0.1
2,895,350 - -0.1
2,895,383 + +0.9
2,895,383 - +0.0
2,895,462 + +1.3
2,895,467 + -0.2
2,895,467 + -0.2
2,895,470 - +1.2
2,895,475 - +0.3
2,895,475 - +0.1
2,895,516 - CCNA_02733 0.11 +0.6
2,895,523 + CCNA_02733 0.12 -1.1
2,895,531 - CCNA_02733 0.13 +0.2
2,895,531 - CCNA_02733 0.13 +0.4
2,895,531 - CCNA_02733 0.13 +1.2
2,895,591 - CCNA_02733 0.21 +0.3
2,895,592 - CCNA_02733 0.21 +0.5
2,895,611 + CCNA_02733 0.23 -0.8
2,895,647 - CCNA_02733 0.28 -0.7
2,895,649 + CCNA_02733 0.28 -0.3
2,895,670 - CCNA_02733 0.31 +0.2
2,895,670 - CCNA_02733 0.31 +0.4
2,895,670 - CCNA_02733 0.31 -0.0
2,895,681 - CCNA_02733 0.32 -0.1
2,895,688 - CCNA_02733 0.33 +0.9
2,895,771 - CCNA_02733 0.44 -0.4
2,895,815 + CCNA_02733 0.49 -0.2
2,895,816 - CCNA_02733 0.49 +0.7
2,895,816 - CCNA_02733 0.49 +0.2
2,895,816 - CCNA_02733 0.49 +0.7
2,895,823 - CCNA_02733 0.50 +0.6
2,895,833 + CCNA_02733 0.51 +0.2
2,895,893 + CCNA_02733 0.59 -1.6
2,895,893 + CCNA_02733 0.59 +0.4
2,895,893 + CCNA_02733 0.59 -1.0
2,895,893 + CCNA_02733 0.59 -0.6
2,895,893 + CCNA_02733 0.59 -1.9
2,895,893 + CCNA_02733 0.59 +0.7
2,895,893 + CCNA_02733 0.59 -0.2
2,895,893 + CCNA_02733 0.59 -0.6
2,895,901 - CCNA_02733 0.60 +0.8
2,895,901 - CCNA_02733 0.60 -0.1
2,895,901 - CCNA_02733 0.60 -0.3
2,895,901 - CCNA_02733 0.60 +1.1
2,895,936 - CCNA_02733 0.65 -0.2
2,895,979 - CCNA_02733 0.70 -0.2
2,896,016 + CCNA_02733 0.75 +0.3
2,896,021 + CCNA_02733 0.75 -1.0
2,896,021 + CCNA_02733 0.75 -0.0
2,896,029 - CCNA_02733 0.77 -0.5
2,896,029 - CCNA_02733 0.77 +0.1
2,896,029 - CCNA_02733 0.77 +0.3
2,896,036 - CCNA_02733 0.77 -0.4
2,896,063 - CCNA_02733 0.81 -1.0
2,896,065 + CCNA_02733 0.81 +0.2
2,896,088 - CCNA_02733 0.84 -0.3
2,896,088 - CCNA_02733 0.84 +0.0
2,896,102 + CCNA_02733 0.86 -0.3
2,896,117 - CCNA_02733 0.88 -0.2

Or see this region's nucleotide sequence