Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02730 and CCNA_02731 overlap by 4 nucleotides CCNA_02731 and CCNA_02732 are separated by 115 nucleotides CCNA_02732 and CCNA_02733 are separated by 260 nucleotides
CCNA_02730: CCNA_02730 - glutathione S-transferase, at 2,893,514 to 2,894,161
_02730
CCNA_02731: CCNA_02731 - acetyltransferase, at 2,894,158 to 2,894,847
_02731
CCNA_02732: CCNA_02732 - hypothetical protein, at 2,894,963 to 2,895,169
_02732
CCNA_02733: CCNA_02733 - glutaminyl-peptide cyclotransferase, at 2,895,430 to 2,896,212
_02733
Position (kb)
2894
2895
2896 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2894.012 kb on + strand, within CCNA_02730 at 2894.034 kb on - strand, within CCNA_02730 at 2894.058 kb on - strand, within CCNA_02730 at 2894.079 kb on - strand, within CCNA_02730 at 2894.085 kb on - strand, within CCNA_02730 at 2894.122 kb on - strand at 2894.152 kb on + strand at 2894.155 kb on + strand at 2894.163 kb on - strand at 2894.188 kb on + strand at 2894.210 kb on - strand at 2894.258 kb on - strand, within CCNA_02731 at 2894.324 kb on + strand, within CCNA_02731 at 2894.324 kb on + strand, within CCNA_02731 at 2894.324 kb on + strand, within CCNA_02731 at 2894.324 kb on + strand, within CCNA_02731 at 2894.332 kb on - strand, within CCNA_02731 at 2894.351 kb on - strand, within CCNA_02731 at 2894.363 kb on + strand, within CCNA_02731 at 2894.373 kb on + strand, within CCNA_02731 at 2894.375 kb on + strand, within CCNA_02731 at 2894.381 kb on - strand, within CCNA_02731 at 2894.381 kb on - strand, within CCNA_02731 at 2894.381 kb on - strand, within CCNA_02731 at 2894.381 kb on - strand, within CCNA_02731 at 2894.383 kb on - strand, within CCNA_02731 at 2894.383 kb on - strand, within CCNA_02731 at 2894.408 kb on + strand, within CCNA_02731 at 2894.430 kb on + strand, within CCNA_02731 at 2894.448 kb on - strand, within CCNA_02731 at 2894.462 kb on - strand, within CCNA_02731 at 2894.491 kb on - strand, within CCNA_02731 at 2894.491 kb on - strand, within CCNA_02731 at 2894.544 kb on - strand, within CCNA_02731 at 2894.572 kb on + strand, within CCNA_02731 at 2894.603 kb on + strand, within CCNA_02731 at 2894.616 kb on + strand, within CCNA_02731 at 2894.666 kb on + strand, within CCNA_02731 at 2894.688 kb on - strand, within CCNA_02731 at 2894.717 kb on + strand, within CCNA_02731 at 2894.730 kb on - strand, within CCNA_02731 at 2894.730 kb on - strand, within CCNA_02731 at 2894.737 kb on - strand, within CCNA_02731 at 2894.755 kb on + strand, within CCNA_02731 at 2894.763 kb on - strand, within CCNA_02731 at 2894.808 kb on + strand at 2894.821 kb on - strand at 2894.835 kb on + strand at 2894.835 kb on + strand at 2894.851 kb on - strand at 2894.863 kb on + strand at 2894.887 kb on + strand at 2894.908 kb on + strand at 2894.910 kb on - strand at 2894.960 kb on + strand at 2894.965 kb on + strand at 2894.974 kb on - strand at 2895.012 kb on + strand, within CCNA_02732 at 2895.024 kb on + strand, within CCNA_02732 at 2895.107 kb on - strand, within CCNA_02732 at 2895.116 kb on + strand, within CCNA_02732 at 2895.164 kb on - strand at 2895.179 kb on - strand at 2895.256 kb on - strand at 2895.272 kb on - strand at 2895.297 kb on - strand at 2895.307 kb on - strand at 2895.307 kb on - strand at 2895.314 kb on + strand at 2895.322 kb on - strand at 2895.350 kb on - strand at 2895.383 kb on + strand at 2895.383 kb on - strand at 2895.462 kb on + strand at 2895.467 kb on + strand at 2895.467 kb on + strand at 2895.470 kb on - strand at 2895.475 kb on - strand at 2895.475 kb on - strand at 2895.516 kb on - strand, within CCNA_02733 at 2895.523 kb on + strand, within CCNA_02733 at 2895.531 kb on - strand, within CCNA_02733 at 2895.531 kb on - strand, within CCNA_02733 at 2895.531 kb on - strand, within CCNA_02733 at 2895.591 kb on - strand, within CCNA_02733 at 2895.592 kb on - strand, within CCNA_02733 at 2895.611 kb on + strand, within CCNA_02733 at 2895.647 kb on - strand, within CCNA_02733 at 2895.649 kb on + strand, within CCNA_02733 at 2895.670 kb on - strand, within CCNA_02733 at 2895.670 kb on - strand, within CCNA_02733 at 2895.670 kb on - strand, within CCNA_02733 at 2895.681 kb on - strand, within CCNA_02733 at 2895.688 kb on - strand, within CCNA_02733 at 2895.771 kb on - strand, within CCNA_02733 at 2895.815 kb on + strand, within CCNA_02733 at 2895.816 kb on - strand, within CCNA_02733 at 2895.816 kb on - strand, within CCNA_02733 at 2895.816 kb on - strand, within CCNA_02733 at 2895.823 kb on - strand, within CCNA_02733 at 2895.833 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.936 kb on - strand, within CCNA_02733 at 2895.979 kb on - strand, within CCNA_02733 at 2896.016 kb on + strand, within CCNA_02733 at 2896.021 kb on + strand, within CCNA_02733 at 2896.021 kb on + strand, within CCNA_02733 at 2896.029 kb on - strand, within CCNA_02733 at 2896.029 kb on - strand, within CCNA_02733 at 2896.029 kb on - strand, within CCNA_02733 at 2896.036 kb on - strand, within CCNA_02733 at 2896.063 kb on - strand, within CCNA_02733 at 2896.065 kb on + strand, within CCNA_02733 at 2896.088 kb on - strand, within CCNA_02733 at 2896.088 kb on - strand, within CCNA_02733 at 2896.102 kb on + strand, within CCNA_02733 at 2896.117 kb on - strand, within CCNA_02733
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,894,012 + CCNA_02730 0.77 -0.3 2,894,034 - CCNA_02730 0.80 +0.0 2,894,058 - CCNA_02730 0.84 -0.7 2,894,079 - CCNA_02730 0.87 -0.8 2,894,085 - CCNA_02730 0.88 +1.2 2,894,122 - -0.2 2,894,152 + +0.1 2,894,155 + +0.3 2,894,163 - +0.1 2,894,188 + +0.4 2,894,210 - +0.6 2,894,258 - CCNA_02731 0.14 +1.1 2,894,324 + CCNA_02731 0.24 +0.3 2,894,324 + CCNA_02731 0.24 +1.0 2,894,324 + CCNA_02731 0.24 -1.4 2,894,324 + CCNA_02731 0.24 -0.1 2,894,332 - CCNA_02731 0.25 -0.3 2,894,351 - CCNA_02731 0.28 -0.6 2,894,363 + CCNA_02731 0.30 +1.0 2,894,373 + CCNA_02731 0.31 +0.2 2,894,375 + CCNA_02731 0.31 -0.3 2,894,381 - CCNA_02731 0.32 +0.2 2,894,381 - CCNA_02731 0.32 +1.0 2,894,381 - CCNA_02731 0.32 +0.3 2,894,381 - CCNA_02731 0.32 +1.1 2,894,383 - CCNA_02731 0.33 +1.2 2,894,383 - CCNA_02731 0.33 -0.0 2,894,408 + CCNA_02731 0.36 +0.8 2,894,430 + CCNA_02731 0.39 +0.4 2,894,448 - CCNA_02731 0.42 +0.5 2,894,462 - CCNA_02731 0.44 +0.5 2,894,491 - CCNA_02731 0.48 +0.1 2,894,491 - CCNA_02731 0.48 +0.5 2,894,544 - CCNA_02731 0.56 +0.4 2,894,572 + CCNA_02731 0.60 -0.1 2,894,603 + CCNA_02731 0.64 -0.0 2,894,616 + CCNA_02731 0.66 +0.2 2,894,666 + CCNA_02731 0.74 -0.5 2,894,688 - CCNA_02731 0.77 -2.0 2,894,717 + CCNA_02731 0.81 -0.2 2,894,730 - CCNA_02731 0.83 +0.2 2,894,730 - CCNA_02731 0.83 +0.2 2,894,737 - CCNA_02731 0.84 +0.7 2,894,755 + CCNA_02731 0.87 -1.3 2,894,763 - CCNA_02731 0.88 -0.0 2,894,808 + +1.1 2,894,821 - +0.0 2,894,835 + -0.5 2,894,835 + -0.4 2,894,851 - +0.2 2,894,863 + +0.6 2,894,887 + -1.1 2,894,908 + +0.6 2,894,910 - +0.5 2,894,960 + +1.8 2,894,965 + +0.5 2,894,974 - +0.2 2,895,012 + CCNA_02732 0.24 -0.0 2,895,024 + CCNA_02732 0.29 -0.5 2,895,107 - CCNA_02732 0.70 +0.2 2,895,116 + CCNA_02732 0.74 +0.7 2,895,164 - +0.3 2,895,179 - +0.1 2,895,256 - +0.6 2,895,272 - +0.1 2,895,297 - +0.4 2,895,307 - -0.3 2,895,307 - -0.9 2,895,314 + +0.3 2,895,322 - -0.1 2,895,350 - -0.1 2,895,383 + +0.9 2,895,383 - +0.0 2,895,462 + +1.3 2,895,467 + -0.2 2,895,467 + -0.2 2,895,470 - +1.2 2,895,475 - +0.3 2,895,475 - +0.1 2,895,516 - CCNA_02733 0.11 +0.6 2,895,523 + CCNA_02733 0.12 -1.1 2,895,531 - CCNA_02733 0.13 +0.2 2,895,531 - CCNA_02733 0.13 +0.4 2,895,531 - CCNA_02733 0.13 +1.2 2,895,591 - CCNA_02733 0.21 +0.3 2,895,592 - CCNA_02733 0.21 +0.5 2,895,611 + CCNA_02733 0.23 -0.8 2,895,647 - CCNA_02733 0.28 -0.7 2,895,649 + CCNA_02733 0.28 -0.3 2,895,670 - CCNA_02733 0.31 +0.2 2,895,670 - CCNA_02733 0.31 +0.4 2,895,670 - CCNA_02733 0.31 -0.0 2,895,681 - CCNA_02733 0.32 -0.1 2,895,688 - CCNA_02733 0.33 +0.9 2,895,771 - CCNA_02733 0.44 -0.4 2,895,815 + CCNA_02733 0.49 -0.2 2,895,816 - CCNA_02733 0.49 +0.7 2,895,816 - CCNA_02733 0.49 +0.2 2,895,816 - CCNA_02733 0.49 +0.7 2,895,823 - CCNA_02733 0.50 +0.6 2,895,833 + CCNA_02733 0.51 +0.2 2,895,893 + CCNA_02733 0.59 -1.6 2,895,893 + CCNA_02733 0.59 +0.4 2,895,893 + CCNA_02733 0.59 -1.0 2,895,893 + CCNA_02733 0.59 -0.6 2,895,893 + CCNA_02733 0.59 -1.9 2,895,893 + CCNA_02733 0.59 +0.7 2,895,893 + CCNA_02733 0.59 -0.2 2,895,893 + CCNA_02733 0.59 -0.6 2,895,901 - CCNA_02733 0.60 +0.8 2,895,901 - CCNA_02733 0.60 -0.1 2,895,901 - CCNA_02733 0.60 -0.3 2,895,901 - CCNA_02733 0.60 +1.1 2,895,936 - CCNA_02733 0.65 -0.2 2,895,979 - CCNA_02733 0.70 -0.2 2,896,016 + CCNA_02733 0.75 +0.3 2,896,021 + CCNA_02733 0.75 -1.0 2,896,021 + CCNA_02733 0.75 -0.0 2,896,029 - CCNA_02733 0.77 -0.5 2,896,029 - CCNA_02733 0.77 +0.1 2,896,029 - CCNA_02733 0.77 +0.3 2,896,036 - CCNA_02733 0.77 -0.4 2,896,063 - CCNA_02733 0.81 -1.0 2,896,065 + CCNA_02733 0.81 +0.2 2,896,088 - CCNA_02733 0.84 -0.3 2,896,088 - CCNA_02733 0.84 +0.0 2,896,102 + CCNA_02733 0.86 -0.3 2,896,117 - CCNA_02733 0.88 -0.2
Or see this region's nucleotide sequence