Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02702 and CCNA_02703 overlap by 1 nucleotides CCNA_02703 and CCNA_02704 are separated by 335 nucleotides CCNA_02704 and CCNA_02705 are separated by 120 nucleotides CCNA_02705 and CCNA_R0064 are separated by 246 nucleotides CCNA_R0064 and CCNA_R0065 are separated by 63 nucleotides CCNA_R0065 and CCNA_R0066 are separated by 98 nucleotides
CCNA_02702: CCNA_02702 - xanthine dehydrogenase small subunit, at 2,857,314 to 2,858,762
_02702
CCNA_02703: CCNA_02703 - 5-hydroxyisourate hydrolase, at 2,858,762 to 2,859,109
_02703
CCNA_02704: CCNA_02704 - NADP-dependent malic enzyme, at 2,859,445 to 2,861,721
_02704
CCNA_02705: CCNA_02705 - cold shock protein CspC, at 2,861,842 to 2,862,051
_02705
CCNA_R0064: CCNA_R0064 - tRNA-Met, at 2,862,298 to 2,862,374
_R0064
CCNA_R0065: CCNA_R0065 - 5S ribosomal RNA, at 2,862,438 to 2,862,555
_R0065
CCNA_R0066: CCNA_R0066 - 23S ribosomal RNA, at 2,862,654 to 2,865,446
_R0066
Position (kb)
2859
2860
2861
2862 Strain fitness (log2 ratio)
-1
0
1
2 at 2858.446 kb on + strand, within CCNA_02702 at 2858.564 kb on - strand, within CCNA_02702 at 2858.581 kb on - strand, within CCNA_02702 at 2858.583 kb on + strand, within CCNA_02702 at 2858.601 kb on + strand, within CCNA_02702 at 2858.601 kb on + strand, within CCNA_02702 at 2858.609 kb on - strand, within CCNA_02702 at 2858.609 kb on - strand, within CCNA_02702 at 2858.609 kb on - strand, within CCNA_02702 at 2858.611 kb on + strand, within CCNA_02702 at 2858.719 kb on + strand at 2858.719 kb on + strand at 2858.726 kb on - strand at 2858.738 kb on + strand at 2858.758 kb on + strand at 2858.793 kb on + strand at 2858.794 kb on - strand at 2858.814 kb on + strand, within CCNA_02703 at 2858.814 kb on + strand, within CCNA_02703 at 2858.814 kb on + strand, within CCNA_02703 at 2858.906 kb on - strand, within CCNA_02703 at 2858.906 kb on - strand, within CCNA_02703 at 2859.139 kb on + strand at 2859.158 kb on + strand at 2859.166 kb on - strand at 2859.171 kb on - strand at 2859.171 kb on - strand at 2859.174 kb on + strand at 2859.188 kb on + strand at 2859.214 kb on - strand at 2859.342 kb on + strand at 2859.342 kb on + strand at 2859.350 kb on - strand at 2859.350 kb on - strand at 2859.357 kb on + strand at 2859.365 kb on - strand at 2859.401 kb on + strand at 2859.610 kb on - strand at 2859.618 kb on + strand at 2859.797 kb on + strand, within CCNA_02704 at 2859.855 kb on + strand, within CCNA_02704 at 2860.004 kb on - strand, within CCNA_02704 at 2860.004 kb on - strand, within CCNA_02704 at 2860.004 kb on - strand, within CCNA_02704 at 2860.307 kb on - strand, within CCNA_02704 at 2860.390 kb on - strand, within CCNA_02704 at 2860.525 kb on + strand, within CCNA_02704 at 2860.697 kb on + strand, within CCNA_02704 at 2860.697 kb on + strand, within CCNA_02704 at 2860.816 kb on + strand, within CCNA_02704 at 2860.816 kb on + strand, within CCNA_02704 at 2861.131 kb on + strand, within CCNA_02704 at 2861.389 kb on + strand, within CCNA_02704 at 2861.610 kb on + strand at 2862.132 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,858,446 + CCNA_02702 0.78 -0.4 2,858,564 - CCNA_02702 0.86 +0.3 2,858,581 - CCNA_02702 0.87 +0.5 2,858,583 + CCNA_02702 0.88 -0.5 2,858,601 + CCNA_02702 0.89 -0.1 2,858,601 + CCNA_02702 0.89 +0.1 2,858,609 - CCNA_02702 0.89 -0.3 2,858,609 - CCNA_02702 0.89 +1.4 2,858,609 - CCNA_02702 0.89 +0.3 2,858,611 + CCNA_02702 0.90 -0.4 2,858,719 + -0.9 2,858,719 + -0.5 2,858,726 - +0.4 2,858,738 + -0.6 2,858,758 + +2.0 2,858,793 + +0.1 2,858,794 - -0.2 2,858,814 + CCNA_02703 0.15 +0.4 2,858,814 + CCNA_02703 0.15 +0.2 2,858,814 + CCNA_02703 0.15 +0.6 2,858,906 - CCNA_02703 0.41 -0.1 2,858,906 - CCNA_02703 0.41 +0.8 2,859,139 + -0.3 2,859,158 + -0.6 2,859,166 - +0.5 2,859,171 - +0.4 2,859,171 - +0.1 2,859,174 + -0.2 2,859,188 + +0.2 2,859,214 - +0.1 2,859,342 + +0.5 2,859,342 + +0.2 2,859,350 - -0.8 2,859,350 - -1.3 2,859,357 + +0.2 2,859,365 - -0.3 2,859,401 + -0.8 2,859,610 - +0.8 2,859,618 + +0.2 2,859,797 + CCNA_02704 0.15 -0.1 2,859,855 + CCNA_02704 0.18 +0.8 2,860,004 - CCNA_02704 0.25 +0.3 2,860,004 - CCNA_02704 0.25 +0.5 2,860,004 - CCNA_02704 0.25 +0.9 2,860,307 - CCNA_02704 0.38 -0.1 2,860,390 - CCNA_02704 0.42 -1.5 2,860,525 + CCNA_02704 0.47 -0.9 2,860,697 + CCNA_02704 0.55 -0.4 2,860,697 + CCNA_02704 0.55 +1.2 2,860,816 + CCNA_02704 0.60 -0.6 2,860,816 + CCNA_02704 0.60 -0.6 2,861,131 + CCNA_02704 0.74 -0.1 2,861,389 + CCNA_02704 0.85 -1.3 2,861,610 + +0.8 2,862,132 - -0.9
Or see this region's nucleotide sequence