Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02694 and CCNA_02695 are separated by 218 nucleotides CCNA_02695 and CCNA_02696 overlap by 4 nucleotides CCNA_02696 and CCNA_02697 overlap by 4 nucleotides CCNA_02697 and CCNA_02698 are separated by 9 nucleotides
CCNA_02694: CCNA_02694 - acetamidase/formamidase family protein, at 2,848,273 to 2,849,238
_02694
CCNA_02695: CCNA_02695 - hypothetical protein, at 2,849,457 to 2,849,675
_02695
CCNA_02696: CCNA_02696 - AtzE family amidohydrolase, at 2,849,672 to 2,851,066
_02696
CCNA_02697: CCNA_02697 - hypothetical protein, at 2,851,063 to 2,851,479
_02697
CCNA_02698: CCNA_02698 - Inosine-uridine nucleoside N-ribohydrolase, at 2,851,489 to 2,852,460
_02698
Position (kb)
2849
2850
2851
2852 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2848.675 kb on - strand, within CCNA_02694 at 2848.695 kb on + strand, within CCNA_02694 at 2848.695 kb on + strand, within CCNA_02694 at 2848.703 kb on - strand, within CCNA_02694 at 2848.703 kb on - strand, within CCNA_02694 at 2848.789 kb on - strand, within CCNA_02694 at 2848.818 kb on + strand, within CCNA_02694 at 2848.821 kb on - strand, within CCNA_02694 at 2848.826 kb on - strand, within CCNA_02694 at 2848.877 kb on + strand, within CCNA_02694 at 2848.890 kb on - strand, within CCNA_02694 at 2848.891 kb on - strand, within CCNA_02694 at 2848.891 kb on - strand, within CCNA_02694 at 2848.895 kb on + strand, within CCNA_02694 at 2848.933 kb on - strand, within CCNA_02694 at 2848.940 kb on + strand, within CCNA_02694 at 2848.949 kb on + strand, within CCNA_02694 at 2848.962 kb on + strand, within CCNA_02694 at 2848.962 kb on + strand, within CCNA_02694 at 2848.988 kb on - strand, within CCNA_02694 at 2849.021 kb on + strand, within CCNA_02694 at 2849.030 kb on - strand, within CCNA_02694 at 2849.030 kb on - strand, within CCNA_02694 at 2849.030 kb on - strand, within CCNA_02694 at 2849.044 kb on + strand, within CCNA_02694 at 2849.052 kb on - strand, within CCNA_02694 at 2849.071 kb on - strand, within CCNA_02694 at 2849.178 kb on + strand at 2849.200 kb on + strand at 2849.209 kb on - strand at 2849.209 kb on - strand at 2849.260 kb on + strand at 2849.260 kb on + strand at 2849.268 kb on - strand at 2849.268 kb on - strand at 2849.268 kb on - strand at 2849.284 kb on + strand at 2849.284 kb on + strand at 2849.292 kb on - strand at 2849.340 kb on + strand at 2849.372 kb on - strand at 2849.372 kb on - strand at 2849.372 kb on - strand at 2849.383 kb on + strand at 2849.383 kb on + strand at 2849.396 kb on + strand at 2849.449 kb on - strand at 2849.545 kb on + strand, within CCNA_02695 at 2849.545 kb on + strand, within CCNA_02695 at 2849.545 kb on + strand, within CCNA_02695 at 2849.553 kb on - strand, within CCNA_02695 at 2849.568 kb on - strand, within CCNA_02695 at 2849.587 kb on + strand, within CCNA_02695 at 2849.595 kb on + strand, within CCNA_02695 at 2849.595 kb on + strand, within CCNA_02695 at 2849.597 kb on + strand, within CCNA_02695 at 2849.626 kb on - strand, within CCNA_02695 at 2849.671 kb on - strand at 2849.695 kb on - strand at 2849.707 kb on + strand at 2849.725 kb on - strand at 2849.873 kb on + strand, within CCNA_02696 at 2849.902 kb on + strand, within CCNA_02696 at 2849.921 kb on + strand, within CCNA_02696 at 2849.925 kb on + strand, within CCNA_02696 at 2849.987 kb on - strand, within CCNA_02696 at 2850.012 kb on + strand, within CCNA_02696 at 2850.017 kb on + strand, within CCNA_02696 at 2850.025 kb on - strand, within CCNA_02696 at 2850.025 kb on - strand, within CCNA_02696 at 2850.025 kb on - strand, within CCNA_02696 at 2850.042 kb on - strand, within CCNA_02696 at 2850.042 kb on - strand, within CCNA_02696 at 2850.087 kb on - strand, within CCNA_02696 at 2850.087 kb on - strand, within CCNA_02696 at 2850.094 kb on - strand, within CCNA_02696 at 2850.179 kb on - strand, within CCNA_02696 at 2850.226 kb on - strand, within CCNA_02696 at 2850.231 kb on - strand, within CCNA_02696 at 2850.237 kb on + strand, within CCNA_02696 at 2850.249 kb on + strand, within CCNA_02696 at 2850.282 kb on - strand, within CCNA_02696 at 2850.294 kb on + strand, within CCNA_02696 at 2850.351 kb on - strand, within CCNA_02696 at 2850.351 kb on - strand, within CCNA_02696 at 2850.351 kb on - strand, within CCNA_02696 at 2850.363 kb on + strand, within CCNA_02696 at 2850.363 kb on + strand, within CCNA_02696 at 2850.371 kb on - strand, within CCNA_02696 at 2850.442 kb on + strand, within CCNA_02696 at 2850.506 kb on + strand, within CCNA_02696 at 2850.541 kb on + strand, within CCNA_02696 at 2850.546 kb on + strand, within CCNA_02696 at 2850.609 kb on - strand, within CCNA_02696 at 2850.629 kb on + strand, within CCNA_02696 at 2850.629 kb on + strand, within CCNA_02696 at 2850.637 kb on - strand, within CCNA_02696 at 2850.644 kb on + strand, within CCNA_02696 at 2850.672 kb on + strand, within CCNA_02696 at 2850.697 kb on - strand, within CCNA_02696 at 2850.709 kb on + strand, within CCNA_02696 at 2850.737 kb on + strand, within CCNA_02696 at 2850.779 kb on + strand, within CCNA_02696 at 2850.782 kb on - strand, within CCNA_02696 at 2850.788 kb on + strand, within CCNA_02696 at 2850.836 kb on + strand, within CCNA_02696 at 2850.870 kb on + strand, within CCNA_02696 at 2850.871 kb on + strand, within CCNA_02696 at 2850.926 kb on + strand, within CCNA_02696 at 2850.934 kb on - strand at 2850.934 kb on - strand at 2850.936 kb on + strand at 2850.944 kb on - strand at 2850.944 kb on - strand at 2850.944 kb on - strand at 2850.984 kb on - strand at 2850.989 kb on + strand at 2850.997 kb on - strand at 2850.997 kb on - strand at 2850.997 kb on - strand at 2851.150 kb on + strand, within CCNA_02697 at 2851.152 kb on + strand, within CCNA_02697 at 2851.160 kb on - strand, within CCNA_02697 at 2851.164 kb on + strand, within CCNA_02697 at 2851.172 kb on - strand, within CCNA_02697 at 2851.172 kb on - strand, within CCNA_02697 at 2851.192 kb on - strand, within CCNA_02697 at 2851.225 kb on - strand, within CCNA_02697 at 2851.327 kb on + strand, within CCNA_02697 at 2851.397 kb on + strand, within CCNA_02697 at 2851.414 kb on + strand, within CCNA_02697 at 2851.419 kb on + strand, within CCNA_02697 at 2851.429 kb on + strand, within CCNA_02697 at 2851.563 kb on + strand at 2851.578 kb on + strand at 2851.600 kb on + strand, within CCNA_02698 at 2851.644 kb on + strand, within CCNA_02698 at 2851.678 kb on + strand, within CCNA_02698 at 2851.678 kb on + strand, within CCNA_02698 at 2851.678 kb on + strand, within CCNA_02698 at 2851.719 kb on + strand, within CCNA_02698 at 2851.738 kb on - strand, within CCNA_02698 at 2851.758 kb on - strand, within CCNA_02698 at 2851.758 kb on - strand, within CCNA_02698 at 2851.760 kb on + strand, within CCNA_02698 at 2851.763 kb on - strand, within CCNA_02698 at 2851.774 kb on + strand, within CCNA_02698 at 2851.823 kb on - strand, within CCNA_02698 at 2851.845 kb on + strand, within CCNA_02698 at 2851.850 kb on + strand, within CCNA_02698 at 2851.857 kb on + strand, within CCNA_02698 at 2851.868 kb on - strand, within CCNA_02698 at 2851.873 kb on + strand, within CCNA_02698 at 2851.873 kb on + strand, within CCNA_02698 at 2851.877 kb on + strand, within CCNA_02698 at 2851.881 kb on - strand, within CCNA_02698 at 2851.896 kb on - strand, within CCNA_02698 at 2851.904 kb on - strand, within CCNA_02698 at 2851.926 kb on + strand, within CCNA_02698 at 2851.926 kb on + strand, within CCNA_02698 at 2851.934 kb on - strand, within CCNA_02698 at 2851.934 kb on - strand, within CCNA_02698 at 2851.983 kb on + strand, within CCNA_02698 at 2851.985 kb on - strand, within CCNA_02698 at 2852.016 kb on - strand, within CCNA_02698 at 2852.027 kb on + strand, within CCNA_02698 at 2852.037 kb on + strand, within CCNA_02698 at 2852.037 kb on + strand, within CCNA_02698 at 2852.037 kb on + strand, within CCNA_02698 at 2852.045 kb on - strand, within CCNA_02698 at 2852.051 kb on + strand, within CCNA_02698 at 2852.059 kb on - strand, within CCNA_02698
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,848,675 - CCNA_02694 0.42 +0.2 2,848,695 + CCNA_02694 0.44 +0.2 2,848,695 + CCNA_02694 0.44 -0.8 2,848,703 - CCNA_02694 0.45 +1.2 2,848,703 - CCNA_02694 0.45 +0.2 2,848,789 - CCNA_02694 0.53 -2.3 2,848,818 + CCNA_02694 0.56 -0.6 2,848,821 - CCNA_02694 0.57 +0.9 2,848,826 - CCNA_02694 0.57 -0.9 2,848,877 + CCNA_02694 0.63 +0.4 2,848,890 - CCNA_02694 0.64 -0.4 2,848,891 - CCNA_02694 0.64 +0.0 2,848,891 - CCNA_02694 0.64 +0.4 2,848,895 + CCNA_02694 0.64 -1.6 2,848,933 - CCNA_02694 0.68 -0.1 2,848,940 + CCNA_02694 0.69 +0.6 2,848,949 + CCNA_02694 0.70 +0.5 2,848,962 + CCNA_02694 0.71 -0.0 2,848,962 + CCNA_02694 0.71 -0.1 2,848,988 - CCNA_02694 0.74 -1.4 2,849,021 + CCNA_02694 0.77 -0.4 2,849,030 - CCNA_02694 0.78 +0.4 2,849,030 - CCNA_02694 0.78 -0.3 2,849,030 - CCNA_02694 0.78 -0.7 2,849,044 + CCNA_02694 0.80 -0.2 2,849,052 - CCNA_02694 0.81 -0.5 2,849,071 - CCNA_02694 0.83 -1.1 2,849,178 + +0.2 2,849,200 + -0.7 2,849,209 - -0.3 2,849,209 - +1.6 2,849,260 + +0.0 2,849,260 + +0.6 2,849,268 - +0.2 2,849,268 - -0.6 2,849,268 - +2.3 2,849,284 + -0.0 2,849,284 + -0.2 2,849,292 - -0.0 2,849,340 + -1.6 2,849,372 - -0.1 2,849,372 - +0.7 2,849,372 - -1.2 2,849,383 + -0.1 2,849,383 + -0.2 2,849,396 + -0.6 2,849,449 - -0.5 2,849,545 + CCNA_02695 0.40 +0.2 2,849,545 + CCNA_02695 0.40 +0.1 2,849,545 + CCNA_02695 0.40 -0.0 2,849,553 - CCNA_02695 0.44 -0.9 2,849,568 - CCNA_02695 0.51 -0.5 2,849,587 + CCNA_02695 0.59 -0.0 2,849,595 + CCNA_02695 0.63 +0.3 2,849,595 + CCNA_02695 0.63 +0.3 2,849,597 + CCNA_02695 0.64 +0.6 2,849,626 - CCNA_02695 0.77 -0.2 2,849,671 - +0.4 2,849,695 - -0.6 2,849,707 + -0.4 2,849,725 - +1.2 2,849,873 + CCNA_02696 0.14 +0.5 2,849,902 + CCNA_02696 0.16 -0.1 2,849,921 + CCNA_02696 0.18 -0.1 2,849,925 + CCNA_02696 0.18 +0.7 2,849,987 - CCNA_02696 0.23 +0.1 2,850,012 + CCNA_02696 0.24 +0.2 2,850,017 + CCNA_02696 0.25 +0.3 2,850,025 - CCNA_02696 0.25 -0.0 2,850,025 - CCNA_02696 0.25 -0.1 2,850,025 - CCNA_02696 0.25 -0.5 2,850,042 - CCNA_02696 0.27 -1.0 2,850,042 - CCNA_02696 0.27 -0.0 2,850,087 - CCNA_02696 0.30 -0.5 2,850,087 - CCNA_02696 0.30 -0.4 2,850,094 - CCNA_02696 0.30 -0.8 2,850,179 - CCNA_02696 0.36 +0.2 2,850,226 - CCNA_02696 0.40 -0.1 2,850,231 - CCNA_02696 0.40 -1.2 2,850,237 + CCNA_02696 0.41 -0.0 2,850,249 + CCNA_02696 0.41 +0.4 2,850,282 - CCNA_02696 0.44 +0.7 2,850,294 + CCNA_02696 0.45 +1.7 2,850,351 - CCNA_02696 0.49 +1.2 2,850,351 - CCNA_02696 0.49 +0.1 2,850,351 - CCNA_02696 0.49 -1.6 2,850,363 + CCNA_02696 0.50 +0.0 2,850,363 + CCNA_02696 0.50 +0.1 2,850,371 - CCNA_02696 0.50 -0.1 2,850,442 + CCNA_02696 0.55 +0.2 2,850,506 + CCNA_02696 0.60 +0.0 2,850,541 + CCNA_02696 0.62 +0.4 2,850,546 + CCNA_02696 0.63 +0.6 2,850,609 - CCNA_02696 0.67 +0.4 2,850,629 + CCNA_02696 0.69 -0.4 2,850,629 + CCNA_02696 0.69 +0.1 2,850,637 - CCNA_02696 0.69 -0.1 2,850,644 + CCNA_02696 0.70 +0.0 2,850,672 + CCNA_02696 0.72 +1.4 2,850,697 - CCNA_02696 0.73 -0.2 2,850,709 + CCNA_02696 0.74 +1.1 2,850,737 + CCNA_02696 0.76 -0.4 2,850,779 + CCNA_02696 0.79 +1.1 2,850,782 - CCNA_02696 0.80 -1.0 2,850,788 + CCNA_02696 0.80 +0.0 2,850,836 + CCNA_02696 0.83 -0.2 2,850,870 + CCNA_02696 0.86 +0.4 2,850,871 + CCNA_02696 0.86 +0.5 2,850,926 + CCNA_02696 0.90 +0.4 2,850,934 - +1.5 2,850,934 - +0.0 2,850,936 + +0.1 2,850,944 - -1.1 2,850,944 - -1.6 2,850,944 - +1.5 2,850,984 - +0.2 2,850,989 + +0.8 2,850,997 - -0.4 2,850,997 - -0.6 2,850,997 - -0.0 2,851,150 + CCNA_02697 0.21 +1.3 2,851,152 + CCNA_02697 0.21 +0.7 2,851,160 - CCNA_02697 0.23 +0.3 2,851,164 + CCNA_02697 0.24 -0.0 2,851,172 - CCNA_02697 0.26 +0.8 2,851,172 - CCNA_02697 0.26 -0.5 2,851,192 - CCNA_02697 0.31 +0.4 2,851,225 - CCNA_02697 0.39 -0.0 2,851,327 + CCNA_02697 0.63 -0.2 2,851,397 + CCNA_02697 0.80 -0.2 2,851,414 + CCNA_02697 0.84 +1.7 2,851,419 + CCNA_02697 0.85 +0.9 2,851,429 + CCNA_02697 0.88 +0.1 2,851,563 + +0.4 2,851,578 + +0.6 2,851,600 + CCNA_02698 0.11 +0.6 2,851,644 + CCNA_02698 0.16 +0.7 2,851,678 + CCNA_02698 0.19 +0.4 2,851,678 + CCNA_02698 0.19 +1.4 2,851,678 + CCNA_02698 0.19 +1.3 2,851,719 + CCNA_02698 0.24 -0.2 2,851,738 - CCNA_02698 0.26 +0.2 2,851,758 - CCNA_02698 0.28 -0.6 2,851,758 - CCNA_02698 0.28 +0.2 2,851,760 + CCNA_02698 0.28 +1.0 2,851,763 - CCNA_02698 0.28 +0.2 2,851,774 + CCNA_02698 0.29 +0.7 2,851,823 - CCNA_02698 0.34 -2.6 2,851,845 + CCNA_02698 0.37 +0.4 2,851,850 + CCNA_02698 0.37 -0.4 2,851,857 + CCNA_02698 0.38 +0.0 2,851,868 - CCNA_02698 0.39 -1.3 2,851,873 + CCNA_02698 0.40 +0.1 2,851,873 + CCNA_02698 0.40 +0.5 2,851,877 + CCNA_02698 0.40 -0.8 2,851,881 - CCNA_02698 0.40 -1.2 2,851,896 - CCNA_02698 0.42 -0.6 2,851,904 - CCNA_02698 0.43 +0.8 2,851,926 + CCNA_02698 0.45 +0.4 2,851,926 + CCNA_02698 0.45 -0.3 2,851,934 - CCNA_02698 0.46 +0.4 2,851,934 - CCNA_02698 0.46 +0.4 2,851,983 + CCNA_02698 0.51 -0.3 2,851,985 - CCNA_02698 0.51 +0.4 2,852,016 - CCNA_02698 0.54 -0.4 2,852,027 + CCNA_02698 0.55 -0.3 2,852,037 + CCNA_02698 0.56 -0.3 2,852,037 + CCNA_02698 0.56 +0.1 2,852,037 + CCNA_02698 0.56 +0.6 2,852,045 - CCNA_02698 0.57 +0.7 2,852,051 + CCNA_02698 0.58 +0.4 2,852,059 - CCNA_02698 0.59 +0.8
Or see this region's nucleotide sequence