Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02696

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02694 and CCNA_02695 are separated by 218 nucleotidesCCNA_02695 and CCNA_02696 overlap by 4 nucleotidesCCNA_02696 and CCNA_02697 overlap by 4 nucleotidesCCNA_02697 and CCNA_02698 are separated by 9 nucleotides CCNA_02694: CCNA_02694 - acetamidase/formamidase family protein, at 2,848,273 to 2,849,238 _02694 CCNA_02695: CCNA_02695 - hypothetical protein, at 2,849,457 to 2,849,675 _02695 CCNA_02696: CCNA_02696 - AtzE family amidohydrolase, at 2,849,672 to 2,851,066 _02696 CCNA_02697: CCNA_02697 - hypothetical protein, at 2,851,063 to 2,851,479 _02697 CCNA_02698: CCNA_02698 - Inosine-uridine nucleoside N-ribohydrolase, at 2,851,489 to 2,852,460 _02698 Position (kb) 2849 2850 2851 2852Strain fitness (log2 ratio) -2 -1 0 1 2at 2848.675 kb on - strand, within CCNA_02694at 2848.695 kb on + strand, within CCNA_02694at 2848.695 kb on + strand, within CCNA_02694at 2848.703 kb on - strand, within CCNA_02694at 2848.703 kb on - strand, within CCNA_02694at 2848.789 kb on - strand, within CCNA_02694at 2848.818 kb on + strand, within CCNA_02694at 2848.821 kb on - strand, within CCNA_02694at 2848.826 kb on - strand, within CCNA_02694at 2848.877 kb on + strand, within CCNA_02694at 2848.890 kb on - strand, within CCNA_02694at 2848.891 kb on - strand, within CCNA_02694at 2848.891 kb on - strand, within CCNA_02694at 2848.895 kb on + strand, within CCNA_02694at 2848.933 kb on - strand, within CCNA_02694at 2848.940 kb on + strand, within CCNA_02694at 2848.949 kb on + strand, within CCNA_02694at 2848.962 kb on + strand, within CCNA_02694at 2848.962 kb on + strand, within CCNA_02694at 2848.988 kb on - strand, within CCNA_02694at 2849.021 kb on + strand, within CCNA_02694at 2849.030 kb on - strand, within CCNA_02694at 2849.030 kb on - strand, within CCNA_02694at 2849.030 kb on - strand, within CCNA_02694at 2849.044 kb on + strand, within CCNA_02694at 2849.052 kb on - strand, within CCNA_02694at 2849.071 kb on - strand, within CCNA_02694at 2849.178 kb on + strandat 2849.200 kb on + strandat 2849.209 kb on - strandat 2849.209 kb on - strandat 2849.260 kb on + strandat 2849.260 kb on + strandat 2849.268 kb on - strandat 2849.268 kb on - strandat 2849.268 kb on - strandat 2849.284 kb on + strandat 2849.284 kb on + strandat 2849.292 kb on - strandat 2849.340 kb on + strandat 2849.372 kb on - strandat 2849.372 kb on - strandat 2849.372 kb on - strandat 2849.383 kb on + strandat 2849.383 kb on + strandat 2849.396 kb on + strandat 2849.449 kb on - strandat 2849.545 kb on + strand, within CCNA_02695at 2849.545 kb on + strand, within CCNA_02695at 2849.545 kb on + strand, within CCNA_02695at 2849.553 kb on - strand, within CCNA_02695at 2849.568 kb on - strand, within CCNA_02695at 2849.587 kb on + strand, within CCNA_02695at 2849.595 kb on + strand, within CCNA_02695at 2849.595 kb on + strand, within CCNA_02695at 2849.597 kb on + strand, within CCNA_02695at 2849.626 kb on - strand, within CCNA_02695at 2849.671 kb on - strandat 2849.695 kb on - strandat 2849.707 kb on + strandat 2849.725 kb on - strandat 2849.873 kb on + strand, within CCNA_02696at 2849.902 kb on + strand, within CCNA_02696at 2849.921 kb on + strand, within CCNA_02696at 2849.925 kb on + strand, within CCNA_02696at 2849.987 kb on - strand, within CCNA_02696at 2850.012 kb on + strand, within CCNA_02696at 2850.017 kb on + strand, within CCNA_02696at 2850.025 kb on - strand, within CCNA_02696at 2850.025 kb on - strand, within CCNA_02696at 2850.025 kb on - strand, within CCNA_02696at 2850.042 kb on - strand, within CCNA_02696at 2850.042 kb on - strand, within CCNA_02696at 2850.087 kb on - strand, within CCNA_02696at 2850.087 kb on - strand, within CCNA_02696at 2850.094 kb on - strand, within CCNA_02696at 2850.179 kb on - strand, within CCNA_02696at 2850.226 kb on - strand, within CCNA_02696at 2850.231 kb on - strand, within CCNA_02696at 2850.237 kb on + strand, within CCNA_02696at 2850.249 kb on + strand, within CCNA_02696at 2850.282 kb on - strand, within CCNA_02696at 2850.294 kb on + strand, within CCNA_02696at 2850.351 kb on - strand, within CCNA_02696at 2850.351 kb on - strand, within CCNA_02696at 2850.351 kb on - strand, within CCNA_02696at 2850.363 kb on + strand, within CCNA_02696at 2850.363 kb on + strand, within CCNA_02696at 2850.371 kb on - strand, within CCNA_02696at 2850.442 kb on + strand, within CCNA_02696at 2850.506 kb on + strand, within CCNA_02696at 2850.541 kb on + strand, within CCNA_02696at 2850.546 kb on + strand, within CCNA_02696at 2850.609 kb on - strand, within CCNA_02696at 2850.629 kb on + strand, within CCNA_02696at 2850.629 kb on + strand, within CCNA_02696at 2850.637 kb on - strand, within CCNA_02696at 2850.644 kb on + strand, within CCNA_02696at 2850.672 kb on + strand, within CCNA_02696at 2850.697 kb on - strand, within CCNA_02696at 2850.709 kb on + strand, within CCNA_02696at 2850.737 kb on + strand, within CCNA_02696at 2850.779 kb on + strand, within CCNA_02696at 2850.782 kb on - strand, within CCNA_02696at 2850.788 kb on + strand, within CCNA_02696at 2850.836 kb on + strand, within CCNA_02696at 2850.870 kb on + strand, within CCNA_02696at 2850.871 kb on + strand, within CCNA_02696at 2850.926 kb on + strand, within CCNA_02696at 2850.934 kb on - strandat 2850.934 kb on - strandat 2850.936 kb on + strandat 2850.944 kb on - strandat 2850.944 kb on - strandat 2850.944 kb on - strandat 2850.984 kb on - strandat 2850.989 kb on + strandat 2850.997 kb on - strandat 2850.997 kb on - strandat 2850.997 kb on - strandat 2851.150 kb on + strand, within CCNA_02697at 2851.152 kb on + strand, within CCNA_02697at 2851.160 kb on - strand, within CCNA_02697at 2851.164 kb on + strand, within CCNA_02697at 2851.172 kb on - strand, within CCNA_02697at 2851.172 kb on - strand, within CCNA_02697at 2851.192 kb on - strand, within CCNA_02697at 2851.225 kb on - strand, within CCNA_02697at 2851.327 kb on + strand, within CCNA_02697at 2851.397 kb on + strand, within CCNA_02697at 2851.414 kb on + strand, within CCNA_02697at 2851.419 kb on + strand, within CCNA_02697at 2851.429 kb on + strand, within CCNA_02697at 2851.563 kb on + strandat 2851.578 kb on + strandat 2851.600 kb on + strand, within CCNA_02698at 2851.644 kb on + strand, within CCNA_02698at 2851.678 kb on + strand, within CCNA_02698at 2851.678 kb on + strand, within CCNA_02698at 2851.678 kb on + strand, within CCNA_02698at 2851.719 kb on + strand, within CCNA_02698at 2851.738 kb on - strand, within CCNA_02698at 2851.758 kb on - strand, within CCNA_02698at 2851.758 kb on - strand, within CCNA_02698at 2851.760 kb on + strand, within CCNA_02698at 2851.763 kb on - strand, within CCNA_02698at 2851.774 kb on + strand, within CCNA_02698at 2851.823 kb on - strand, within CCNA_02698at 2851.845 kb on + strand, within CCNA_02698at 2851.850 kb on + strand, within CCNA_02698at 2851.857 kb on + strand, within CCNA_02698at 2851.868 kb on - strand, within CCNA_02698at 2851.873 kb on + strand, within CCNA_02698at 2851.873 kb on + strand, within CCNA_02698at 2851.877 kb on + strand, within CCNA_02698at 2851.881 kb on - strand, within CCNA_02698at 2851.896 kb on - strand, within CCNA_02698at 2851.904 kb on - strand, within CCNA_02698at 2851.926 kb on + strand, within CCNA_02698at 2851.926 kb on + strand, within CCNA_02698at 2851.934 kb on - strand, within CCNA_02698at 2851.934 kb on - strand, within CCNA_02698at 2851.983 kb on + strand, within CCNA_02698at 2851.985 kb on - strand, within CCNA_02698at 2852.016 kb on - strand, within CCNA_02698at 2852.027 kb on + strand, within CCNA_02698at 2852.037 kb on + strand, within CCNA_02698at 2852.037 kb on + strand, within CCNA_02698at 2852.037 kb on + strand, within CCNA_02698at 2852.045 kb on - strand, within CCNA_02698at 2852.051 kb on + strand, within CCNA_02698at 2852.059 kb on - strand, within CCNA_02698

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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2,848,675 - CCNA_02694 0.42 +0.2
2,848,695 + CCNA_02694 0.44 +0.2
2,848,695 + CCNA_02694 0.44 -0.8
2,848,703 - CCNA_02694 0.45 +1.2
2,848,703 - CCNA_02694 0.45 +0.2
2,848,789 - CCNA_02694 0.53 -2.3
2,848,818 + CCNA_02694 0.56 -0.6
2,848,821 - CCNA_02694 0.57 +0.9
2,848,826 - CCNA_02694 0.57 -0.9
2,848,877 + CCNA_02694 0.63 +0.4
2,848,890 - CCNA_02694 0.64 -0.4
2,848,891 - CCNA_02694 0.64 +0.0
2,848,891 - CCNA_02694 0.64 +0.4
2,848,895 + CCNA_02694 0.64 -1.6
2,848,933 - CCNA_02694 0.68 -0.1
2,848,940 + CCNA_02694 0.69 +0.6
2,848,949 + CCNA_02694 0.70 +0.5
2,848,962 + CCNA_02694 0.71 -0.0
2,848,962 + CCNA_02694 0.71 -0.1
2,848,988 - CCNA_02694 0.74 -1.4
2,849,021 + CCNA_02694 0.77 -0.4
2,849,030 - CCNA_02694 0.78 +0.4
2,849,030 - CCNA_02694 0.78 -0.3
2,849,030 - CCNA_02694 0.78 -0.7
2,849,044 + CCNA_02694 0.80 -0.2
2,849,052 - CCNA_02694 0.81 -0.5
2,849,071 - CCNA_02694 0.83 -1.1
2,849,178 + +0.2
2,849,200 + -0.7
2,849,209 - -0.3
2,849,209 - +1.6
2,849,260 + +0.0
2,849,260 + +0.6
2,849,268 - +0.2
2,849,268 - -0.6
2,849,268 - +2.3
2,849,284 + -0.0
2,849,284 + -0.2
2,849,292 - -0.0
2,849,340 + -1.6
2,849,372 - -0.1
2,849,372 - +0.7
2,849,372 - -1.2
2,849,383 + -0.1
2,849,383 + -0.2
2,849,396 + -0.6
2,849,449 - -0.5
2,849,545 + CCNA_02695 0.40 +0.2
2,849,545 + CCNA_02695 0.40 +0.1
2,849,545 + CCNA_02695 0.40 -0.0
2,849,553 - CCNA_02695 0.44 -0.9
2,849,568 - CCNA_02695 0.51 -0.5
2,849,587 + CCNA_02695 0.59 -0.0
2,849,595 + CCNA_02695 0.63 +0.3
2,849,595 + CCNA_02695 0.63 +0.3
2,849,597 + CCNA_02695 0.64 +0.6
2,849,626 - CCNA_02695 0.77 -0.2
2,849,671 - +0.4
2,849,695 - -0.6
2,849,707 + -0.4
2,849,725 - +1.2
2,849,873 + CCNA_02696 0.14 +0.5
2,849,902 + CCNA_02696 0.16 -0.1
2,849,921 + CCNA_02696 0.18 -0.1
2,849,925 + CCNA_02696 0.18 +0.7
2,849,987 - CCNA_02696 0.23 +0.1
2,850,012 + CCNA_02696 0.24 +0.2
2,850,017 + CCNA_02696 0.25 +0.3
2,850,025 - CCNA_02696 0.25 -0.0
2,850,025 - CCNA_02696 0.25 -0.1
2,850,025 - CCNA_02696 0.25 -0.5
2,850,042 - CCNA_02696 0.27 -1.0
2,850,042 - CCNA_02696 0.27 -0.0
2,850,087 - CCNA_02696 0.30 -0.5
2,850,087 - CCNA_02696 0.30 -0.4
2,850,094 - CCNA_02696 0.30 -0.8
2,850,179 - CCNA_02696 0.36 +0.2
2,850,226 - CCNA_02696 0.40 -0.1
2,850,231 - CCNA_02696 0.40 -1.2
2,850,237 + CCNA_02696 0.41 -0.0
2,850,249 + CCNA_02696 0.41 +0.4
2,850,282 - CCNA_02696 0.44 +0.7
2,850,294 + CCNA_02696 0.45 +1.7
2,850,351 - CCNA_02696 0.49 +1.2
2,850,351 - CCNA_02696 0.49 +0.1
2,850,351 - CCNA_02696 0.49 -1.6
2,850,363 + CCNA_02696 0.50 +0.0
2,850,363 + CCNA_02696 0.50 +0.1
2,850,371 - CCNA_02696 0.50 -0.1
2,850,442 + CCNA_02696 0.55 +0.2
2,850,506 + CCNA_02696 0.60 +0.0
2,850,541 + CCNA_02696 0.62 +0.4
2,850,546 + CCNA_02696 0.63 +0.6
2,850,609 - CCNA_02696 0.67 +0.4
2,850,629 + CCNA_02696 0.69 -0.4
2,850,629 + CCNA_02696 0.69 +0.1
2,850,637 - CCNA_02696 0.69 -0.1
2,850,644 + CCNA_02696 0.70 +0.0
2,850,672 + CCNA_02696 0.72 +1.4
2,850,697 - CCNA_02696 0.73 -0.2
2,850,709 + CCNA_02696 0.74 +1.1
2,850,737 + CCNA_02696 0.76 -0.4
2,850,779 + CCNA_02696 0.79 +1.1
2,850,782 - CCNA_02696 0.80 -1.0
2,850,788 + CCNA_02696 0.80 +0.0
2,850,836 + CCNA_02696 0.83 -0.2
2,850,870 + CCNA_02696 0.86 +0.4
2,850,871 + CCNA_02696 0.86 +0.5
2,850,926 + CCNA_02696 0.90 +0.4
2,850,934 - +1.5
2,850,934 - +0.0
2,850,936 + +0.1
2,850,944 - -1.1
2,850,944 - -1.6
2,850,944 - +1.5
2,850,984 - +0.2
2,850,989 + +0.8
2,850,997 - -0.4
2,850,997 - -0.6
2,850,997 - -0.0
2,851,150 + CCNA_02697 0.21 +1.3
2,851,152 + CCNA_02697 0.21 +0.7
2,851,160 - CCNA_02697 0.23 +0.3
2,851,164 + CCNA_02697 0.24 -0.0
2,851,172 - CCNA_02697 0.26 +0.8
2,851,172 - CCNA_02697 0.26 -0.5
2,851,192 - CCNA_02697 0.31 +0.4
2,851,225 - CCNA_02697 0.39 -0.0
2,851,327 + CCNA_02697 0.63 -0.2
2,851,397 + CCNA_02697 0.80 -0.2
2,851,414 + CCNA_02697 0.84 +1.7
2,851,419 + CCNA_02697 0.85 +0.9
2,851,429 + CCNA_02697 0.88 +0.1
2,851,563 + +0.4
2,851,578 + +0.6
2,851,600 + CCNA_02698 0.11 +0.6
2,851,644 + CCNA_02698 0.16 +0.7
2,851,678 + CCNA_02698 0.19 +0.4
2,851,678 + CCNA_02698 0.19 +1.4
2,851,678 + CCNA_02698 0.19 +1.3
2,851,719 + CCNA_02698 0.24 -0.2
2,851,738 - CCNA_02698 0.26 +0.2
2,851,758 - CCNA_02698 0.28 -0.6
2,851,758 - CCNA_02698 0.28 +0.2
2,851,760 + CCNA_02698 0.28 +1.0
2,851,763 - CCNA_02698 0.28 +0.2
2,851,774 + CCNA_02698 0.29 +0.7
2,851,823 - CCNA_02698 0.34 -2.6
2,851,845 + CCNA_02698 0.37 +0.4
2,851,850 + CCNA_02698 0.37 -0.4
2,851,857 + CCNA_02698 0.38 +0.0
2,851,868 - CCNA_02698 0.39 -1.3
2,851,873 + CCNA_02698 0.40 +0.1
2,851,873 + CCNA_02698 0.40 +0.5
2,851,877 + CCNA_02698 0.40 -0.8
2,851,881 - CCNA_02698 0.40 -1.2
2,851,896 - CCNA_02698 0.42 -0.6
2,851,904 - CCNA_02698 0.43 +0.8
2,851,926 + CCNA_02698 0.45 +0.4
2,851,926 + CCNA_02698 0.45 -0.3
2,851,934 - CCNA_02698 0.46 +0.4
2,851,934 - CCNA_02698 0.46 +0.4
2,851,983 + CCNA_02698 0.51 -0.3
2,851,985 - CCNA_02698 0.51 +0.4
2,852,016 - CCNA_02698 0.54 -0.4
2,852,027 + CCNA_02698 0.55 -0.3
2,852,037 + CCNA_02698 0.56 -0.3
2,852,037 + CCNA_02698 0.56 +0.1
2,852,037 + CCNA_02698 0.56 +0.6
2,852,045 - CCNA_02698 0.57 +0.7
2,852,051 + CCNA_02698 0.58 +0.4
2,852,059 - CCNA_02698 0.59 +0.8

Or see this region's nucleotide sequence