Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02662 and CCNA_02663 are separated by 128 nucleotides CCNA_02663 and CCNA_02664 are separated by 211 nucleotides CCNA_02664 and CCNA_02665 are separated by 230 nucleotides
CCNA_02662: CCNA_02662 - M28-family zinc peptidase, at 2,815,723 to 2,817,327
_02662
CCNA_02663: CCNA_02663 - DnaK suppressor protein DksA, at 2,817,456 to 2,817,884
_02663
CCNA_02664: CCNA_02664 - flagellar assembly regulator FliX, at 2,818,096 to 2,818,530
_02664
CCNA_02665: CCNA_02665 - flagellar P-ring protein FlgI, at 2,818,761 to 2,819,873
_02665
Position (kb)
2818
2819 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2817.097 kb on - strand, within CCNA_02662 at 2817.097 kb on - strand, within CCNA_02662 at 2817.142 kb on - strand, within CCNA_02662 at 2817.154 kb on + strand, within CCNA_02662 at 2817.162 kb on - strand, within CCNA_02662 at 2817.206 kb on + strand at 2817.206 kb on + strand at 2817.214 kb on - strand at 2817.223 kb on + strand at 2817.241 kb on + strand at 2817.249 kb on - strand at 2817.265 kb on + strand at 2817.273 kb on - strand at 2817.387 kb on + strand at 2817.387 kb on + strand at 2817.405 kb on - strand at 2817.409 kb on - strand at 2817.409 kb on - strand at 2817.419 kb on - strand at 2817.437 kb on - strand at 2817.442 kb on + strand at 2817.449 kb on - strand at 2817.455 kb on - strand at 2817.551 kb on - strand, within CCNA_02663 at 2817.659 kb on + strand, within CCNA_02663 at 2817.665 kb on - strand, within CCNA_02663 at 2817.676 kb on + strand, within CCNA_02663 at 2817.889 kb on - strand at 2818.027 kb on + strand at 2818.045 kb on + strand at 2818.080 kb on - strand at 2818.084 kb on + strand at 2818.098 kb on + strand at 2818.101 kb on - strand at 2818.103 kb on + strand at 2818.332 kb on - strand, within CCNA_02664 at 2818.332 kb on - strand, within CCNA_02664 at 2818.332 kb on - strand, within CCNA_02664 at 2818.560 kb on + strand at 2818.568 kb on - strand at 2818.568 kb on - strand at 2818.568 kb on - strand at 2818.584 kb on + strand at 2818.584 kb on + strand at 2818.692 kb on - strand at 2818.718 kb on + strand at 2818.721 kb on - strand at 2818.766 kb on - strand at 2818.783 kb on - strand at 2818.785 kb on + strand at 2818.785 kb on + strand at 2818.785 kb on + strand at 2818.785 kb on + strand at 2818.785 kb on + strand at 2818.793 kb on - strand at 2818.793 kb on - strand at 2818.793 kb on - strand at 2818.793 kb on - strand at 2818.838 kb on - strand at 2818.871 kb on - strand at 2818.895 kb on - strand, within CCNA_02665 at 2818.908 kb on + strand, within CCNA_02665 at 2818.940 kb on + strand, within CCNA_02665 at 2818.940 kb on + strand, within CCNA_02665 at 2818.967 kb on + strand, within CCNA_02665 at 2818.991 kb on - strand, within CCNA_02665 at 2818.993 kb on + strand, within CCNA_02665 at 2818.993 kb on + strand, within CCNA_02665 at 2818.993 kb on + strand, within CCNA_02665 at 2819.008 kb on + strand, within CCNA_02665 at 2819.023 kb on - strand, within CCNA_02665 at 2819.074 kb on - strand, within CCNA_02665 at 2819.106 kb on + strand, within CCNA_02665 at 2819.106 kb on + strand, within CCNA_02665 at 2819.106 kb on + strand, within CCNA_02665 at 2819.149 kb on + strand, within CCNA_02665 at 2819.160 kb on - strand, within CCNA_02665 at 2819.180 kb on - strand, within CCNA_02665 at 2819.180 kb on - strand, within CCNA_02665 at 2819.180 kb on - strand, within CCNA_02665 at 2819.190 kb on + strand, within CCNA_02665 at 2819.249 kb on + strand, within CCNA_02665 at 2819.249 kb on + strand, within CCNA_02665 at 2819.249 kb on + strand, within CCNA_02665 at 2819.257 kb on - strand, within CCNA_02665 at 2819.257 kb on - strand, within CCNA_02665 at 2819.257 kb on - strand, within CCNA_02665 at 2819.311 kb on + strand, within CCNA_02665 at 2819.311 kb on + strand, within CCNA_02665 at 2819.318 kb on - strand, within CCNA_02665 at 2819.341 kb on + strand, within CCNA_02665 at 2819.346 kb on + strand, within CCNA_02665 at 2819.346 kb on + strand, within CCNA_02665 at 2819.349 kb on - strand, within CCNA_02665 at 2819.354 kb on - strand, within CCNA_02665 at 2819.356 kb on + strand, within CCNA_02665 at 2819.371 kb on + strand, within CCNA_02665 at 2819.425 kb on + strand, within CCNA_02665 at 2819.432 kb on - strand, within CCNA_02665 at 2819.467 kb on - strand, within CCNA_02665 at 2819.525 kb on + strand, within CCNA_02665
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,817,097 - CCNA_02662 0.86 -0.2 2,817,097 - CCNA_02662 0.86 +0.1 2,817,142 - CCNA_02662 0.88 +0.4 2,817,154 + CCNA_02662 0.89 -2.0 2,817,162 - CCNA_02662 0.90 +0.2 2,817,206 + +0.1 2,817,206 + +0.5 2,817,214 - -0.3 2,817,223 + -0.1 2,817,241 + +0.5 2,817,249 - -1.0 2,817,265 + +0.3 2,817,273 - -1.0 2,817,387 + +0.5 2,817,387 + -0.1 2,817,405 - +0.2 2,817,409 - +0.4 2,817,409 - +0.5 2,817,419 - +0.4 2,817,437 - -0.3 2,817,442 + -0.2 2,817,449 - -0.0 2,817,455 - +0.2 2,817,551 - CCNA_02663 0.22 +0.8 2,817,659 + CCNA_02663 0.47 -2.7 2,817,665 - CCNA_02663 0.49 -2.1 2,817,676 + CCNA_02663 0.51 +0.4 2,817,889 - +2.0 2,818,027 + +0.6 2,818,045 + -0.4 2,818,080 - +1.1 2,818,084 + +0.6 2,818,098 + -0.2 2,818,101 - +1.3 2,818,103 + -0.4 2,818,332 - CCNA_02664 0.54 -2.0 2,818,332 - CCNA_02664 0.54 -2.0 2,818,332 - CCNA_02664 0.54 +0.3 2,818,560 + +0.3 2,818,568 - +1.0 2,818,568 - -0.6 2,818,568 - -0.2 2,818,584 + +0.3 2,818,584 + -0.3 2,818,692 - +0.4 2,818,718 + +0.6 2,818,721 - -0.3 2,818,766 - -0.1 2,818,783 - +1.3 2,818,785 + -0.4 2,818,785 + +0.7 2,818,785 + -0.1 2,818,785 + -0.0 2,818,785 + +0.1 2,818,793 - -1.1 2,818,793 - +0.5 2,818,793 - +0.3 2,818,793 - +0.1 2,818,838 - -0.5 2,818,871 - -0.1 2,818,895 - CCNA_02665 0.12 -0.9 2,818,908 + CCNA_02665 0.13 +0.9 2,818,940 + CCNA_02665 0.16 +0.8 2,818,940 + CCNA_02665 0.16 -0.1 2,818,967 + CCNA_02665 0.19 +0.2 2,818,991 - CCNA_02665 0.21 +0.1 2,818,993 + CCNA_02665 0.21 +0.4 2,818,993 + CCNA_02665 0.21 +1.1 2,818,993 + CCNA_02665 0.21 +1.1 2,819,008 + CCNA_02665 0.22 +0.9 2,819,023 - CCNA_02665 0.24 -1.6 2,819,074 - CCNA_02665 0.28 +2.1 2,819,106 + CCNA_02665 0.31 +0.8 2,819,106 + CCNA_02665 0.31 +0.2 2,819,106 + CCNA_02665 0.31 +1.4 2,819,149 + CCNA_02665 0.35 -0.0 2,819,160 - CCNA_02665 0.36 +0.2 2,819,180 - CCNA_02665 0.38 +0.6 2,819,180 - CCNA_02665 0.38 +0.2 2,819,180 - CCNA_02665 0.38 -0.9 2,819,190 + CCNA_02665 0.39 -0.1 2,819,249 + CCNA_02665 0.44 -1.6 2,819,249 + CCNA_02665 0.44 +0.7 2,819,249 + CCNA_02665 0.44 +0.6 2,819,257 - CCNA_02665 0.45 -0.3 2,819,257 - CCNA_02665 0.45 +0.7 2,819,257 - CCNA_02665 0.45 +0.9 2,819,311 + CCNA_02665 0.49 +1.1 2,819,311 + CCNA_02665 0.49 +1.3 2,819,318 - CCNA_02665 0.50 +0.3 2,819,341 + CCNA_02665 0.52 -0.5 2,819,346 + CCNA_02665 0.53 +1.5 2,819,346 + CCNA_02665 0.53 -0.1 2,819,349 - CCNA_02665 0.53 +0.8 2,819,354 - CCNA_02665 0.53 -0.8 2,819,356 + CCNA_02665 0.53 +0.5 2,819,371 + CCNA_02665 0.55 +0.2 2,819,425 + CCNA_02665 0.60 +0.9 2,819,432 - CCNA_02665 0.60 +0.1 2,819,467 - CCNA_02665 0.63 -0.4 2,819,525 + CCNA_02665 0.69 +0.5
Or see this region's nucleotide sequence