Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02617 and CCNA_02618 are separated by 119 nucleotides CCNA_02618 and CCNA_02619 are separated by 135 nucleotides
CCNA_02617: CCNA_02617 - histidinol-phosphate aminotransferase, at 2,765,344 to 2,766,480
_02617
CCNA_02618: CCNA_02618 - AsnC-family transcriptional regulator, at 2,766,600 to 2,767,070
_02618
CCNA_02619: CCNA_02619 - stomatin/prohibitin-related protein, at 2,767,206 to 2,768,111
_02619
Position (kb)
2766
2767
2768 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2765.617 kb on + strand, within CCNA_02617 at 2765.617 kb on + strand, within CCNA_02617 at 2765.625 kb on - strand, within CCNA_02617 at 2765.625 kb on - strand, within CCNA_02617 at 2765.625 kb on - strand, within CCNA_02617 at 2765.625 kb on - strand, within CCNA_02617 at 2765.650 kb on - strand, within CCNA_02617 at 2765.668 kb on + strand, within CCNA_02617 at 2765.676 kb on - strand, within CCNA_02617 at 2765.696 kb on + strand, within CCNA_02617 at 2765.696 kb on + strand, within CCNA_02617 at 2765.725 kb on + strand, within CCNA_02617 at 2765.745 kb on - strand, within CCNA_02617 at 2765.784 kb on + strand, within CCNA_02617 at 2765.795 kb on + strand, within CCNA_02617 at 2765.803 kb on - strand, within CCNA_02617 at 2765.829 kb on - strand, within CCNA_02617 at 2765.863 kb on + strand, within CCNA_02617 at 2765.863 kb on + strand, within CCNA_02617 at 2765.871 kb on - strand, within CCNA_02617 at 2765.898 kb on + strand, within CCNA_02617 at 2765.961 kb on + strand, within CCNA_02617 at 2766.099 kb on - strand, within CCNA_02617 at 2766.115 kb on + strand, within CCNA_02617 at 2766.115 kb on + strand, within CCNA_02617 at 2766.123 kb on - strand, within CCNA_02617 at 2766.133 kb on - strand, within CCNA_02617 at 2766.137 kb on + strand, within CCNA_02617 at 2766.198 kb on - strand, within CCNA_02617 at 2766.225 kb on - strand, within CCNA_02617 at 2766.227 kb on - strand, within CCNA_02617 at 2766.229 kb on + strand, within CCNA_02617 at 2766.234 kb on + strand, within CCNA_02617 at 2766.239 kb on + strand, within CCNA_02617 at 2766.239 kb on + strand, within CCNA_02617 at 2766.239 kb on + strand, within CCNA_02617 at 2766.239 kb on + strand, within CCNA_02617 at 2766.239 kb on + strand, within CCNA_02617 at 2766.293 kb on - strand, within CCNA_02617 at 2766.306 kb on - strand, within CCNA_02617 at 2766.337 kb on + strand, within CCNA_02617 at 2766.337 kb on + strand, within CCNA_02617 at 2766.345 kb on - strand, within CCNA_02617 at 2766.345 kb on - strand, within CCNA_02617 at 2766.359 kb on + strand, within CCNA_02617 at 2766.367 kb on - strand at 2766.369 kb on + strand at 2766.378 kb on - strand at 2766.396 kb on - strand at 2766.396 kb on - strand at 2766.436 kb on + strand at 2766.479 kb on + strand at 2766.600 kb on - strand at 2766.685 kb on + strand, within CCNA_02618 at 2766.685 kb on + strand, within CCNA_02618 at 2766.722 kb on + strand, within CCNA_02618 at 2766.730 kb on - strand, within CCNA_02618 at 2766.732 kb on + strand, within CCNA_02618 at 2766.737 kb on + strand, within CCNA_02618 at 2766.737 kb on + strand, within CCNA_02618 at 2766.757 kb on - strand, within CCNA_02618 at 2766.791 kb on + strand, within CCNA_02618 at 2766.791 kb on + strand, within CCNA_02618 at 2766.791 kb on + strand, within CCNA_02618 at 2766.799 kb on - strand, within CCNA_02618 at 2766.853 kb on + strand, within CCNA_02618 at 2766.873 kb on - strand, within CCNA_02618 at 2766.873 kb on - strand, within CCNA_02618 at 2766.878 kb on - strand, within CCNA_02618 at 2766.883 kb on + strand, within CCNA_02618 at 2766.887 kb on - strand, within CCNA_02618 at 2766.924 kb on + strand, within CCNA_02618 at 2766.924 kb on + strand, within CCNA_02618 at 2766.929 kb on + strand, within CCNA_02618 at 2766.932 kb on - strand, within CCNA_02618 at 2766.937 kb on + strand, within CCNA_02618 at 2766.937 kb on - strand, within CCNA_02618 at 2766.946 kb on + strand, within CCNA_02618 at 2766.947 kb on + strand, within CCNA_02618 at 2766.962 kb on + strand, within CCNA_02618 at 2766.962 kb on + strand, within CCNA_02618 at 2766.962 kb on + strand, within CCNA_02618 at 2766.970 kb on - strand, within CCNA_02618 at 2766.970 kb on - strand, within CCNA_02618 at 2766.979 kb on + strand, within CCNA_02618 at 2766.987 kb on - strand, within CCNA_02618 at 2766.996 kb on - strand, within CCNA_02618 at 2767.011 kb on - strand, within CCNA_02618 at 2767.209 kb on + strand at 2767.223 kb on + strand at 2767.295 kb on - strand at 2767.317 kb on + strand, within CCNA_02619 at 2767.332 kb on - strand, within CCNA_02619 at 2767.349 kb on - strand, within CCNA_02619 at 2767.414 kb on + strand, within CCNA_02619 at 2767.421 kb on + strand, within CCNA_02619 at 2767.421 kb on + strand, within CCNA_02619 at 2767.434 kb on + strand, within CCNA_02619 at 2767.443 kb on - strand, within CCNA_02619 at 2767.479 kb on + strand, within CCNA_02619 at 2767.480 kb on - strand, within CCNA_02619 at 2767.492 kb on + strand, within CCNA_02619 at 2767.492 kb on + strand, within CCNA_02619 at 2767.492 kb on + strand, within CCNA_02619 at 2767.500 kb on - strand, within CCNA_02619 at 2767.500 kb on - strand, within CCNA_02619 at 2767.500 kb on - strand, within CCNA_02619 at 2767.500 kb on - strand, within CCNA_02619 at 2767.500 kb on - strand, within CCNA_02619 at 2767.510 kb on + strand, within CCNA_02619 at 2767.512 kb on + strand, within CCNA_02619 at 2767.601 kb on + strand, within CCNA_02619 at 2767.609 kb on - strand, within CCNA_02619 at 2767.617 kb on + strand, within CCNA_02619 at 2767.629 kb on + strand, within CCNA_02619 at 2767.637 kb on - strand, within CCNA_02619 at 2767.656 kb on - strand, within CCNA_02619 at 2767.718 kb on + strand, within CCNA_02619 at 2767.718 kb on + strand, within CCNA_02619 at 2767.726 kb on - strand, within CCNA_02619 at 2767.732 kb on - strand, within CCNA_02619 at 2767.736 kb on + strand, within CCNA_02619 at 2767.742 kb on - strand, within CCNA_02619 at 2767.744 kb on - strand, within CCNA_02619 at 2767.769 kb on + strand, within CCNA_02619 at 2767.770 kb on + strand, within CCNA_02619 at 2767.770 kb on + strand, within CCNA_02619 at 2767.770 kb on + strand, within CCNA_02619 at 2767.778 kb on - strand, within CCNA_02619 at 2767.778 kb on - strand, within CCNA_02619 at 2767.778 kb on - strand, within CCNA_02619 at 2767.809 kb on - strand, within CCNA_02619 at 2767.877 kb on + strand, within CCNA_02619 at 2767.877 kb on + strand, within CCNA_02619 at 2767.943 kb on + strand, within CCNA_02619 at 2767.964 kb on + strand, within CCNA_02619 at 2767.991 kb on + strand, within CCNA_02619
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,765,617 + CCNA_02617 0.24 -1.3 2,765,617 + CCNA_02617 0.24 -1.0 2,765,625 - CCNA_02617 0.25 +0.2 2,765,625 - CCNA_02617 0.25 -0.3 2,765,625 - CCNA_02617 0.25 +1.1 2,765,625 - CCNA_02617 0.25 +0.5 2,765,650 - CCNA_02617 0.27 -0.1 2,765,668 + CCNA_02617 0.28 +0.7 2,765,676 - CCNA_02617 0.29 +0.4 2,765,696 + CCNA_02617 0.31 -0.3 2,765,696 + CCNA_02617 0.31 -1.0 2,765,725 + CCNA_02617 0.34 +0.9 2,765,745 - CCNA_02617 0.35 +0.3 2,765,784 + CCNA_02617 0.39 +0.1 2,765,795 + CCNA_02617 0.40 -0.4 2,765,803 - CCNA_02617 0.40 -0.5 2,765,829 - CCNA_02617 0.43 +0.3 2,765,863 + CCNA_02617 0.46 -0.6 2,765,863 + CCNA_02617 0.46 -0.1 2,765,871 - CCNA_02617 0.46 +0.5 2,765,898 + CCNA_02617 0.49 -0.5 2,765,961 + CCNA_02617 0.54 -0.1 2,766,099 - CCNA_02617 0.66 +0.2 2,766,115 + CCNA_02617 0.68 -0.8 2,766,115 + CCNA_02617 0.68 -0.1 2,766,123 - CCNA_02617 0.69 +0.1 2,766,133 - CCNA_02617 0.69 -0.1 2,766,137 + CCNA_02617 0.70 +0.1 2,766,198 - CCNA_02617 0.75 -0.3 2,766,225 - CCNA_02617 0.77 +0.2 2,766,227 - CCNA_02617 0.78 +0.1 2,766,229 + CCNA_02617 0.78 -0.5 2,766,234 + CCNA_02617 0.78 +0.1 2,766,239 + CCNA_02617 0.79 -0.9 2,766,239 + CCNA_02617 0.79 +0.4 2,766,239 + CCNA_02617 0.79 -0.2 2,766,239 + CCNA_02617 0.79 -1.9 2,766,239 + CCNA_02617 0.79 -0.0 2,766,293 - CCNA_02617 0.83 +0.7 2,766,306 - CCNA_02617 0.85 -0.1 2,766,337 + CCNA_02617 0.87 +0.8 2,766,337 + CCNA_02617 0.87 -0.2 2,766,345 - CCNA_02617 0.88 -0.2 2,766,345 - CCNA_02617 0.88 +0.2 2,766,359 + CCNA_02617 0.89 +0.7 2,766,367 - +0.1 2,766,369 + -0.8 2,766,378 - -0.2 2,766,396 - -0.1 2,766,396 - -0.3 2,766,436 + -0.8 2,766,479 + -0.0 2,766,600 - -0.1 2,766,685 + CCNA_02618 0.18 -0.2 2,766,685 + CCNA_02618 0.18 -0.3 2,766,722 + CCNA_02618 0.26 +0.4 2,766,730 - CCNA_02618 0.28 -0.1 2,766,732 + CCNA_02618 0.28 +0.4 2,766,737 + CCNA_02618 0.29 -1.1 2,766,737 + CCNA_02618 0.29 -0.7 2,766,757 - CCNA_02618 0.33 +1.6 2,766,791 + CCNA_02618 0.41 +0.4 2,766,791 + CCNA_02618 0.41 +0.7 2,766,791 + CCNA_02618 0.41 +0.0 2,766,799 - CCNA_02618 0.42 +1.1 2,766,853 + CCNA_02618 0.54 -0.3 2,766,873 - CCNA_02618 0.58 +0.2 2,766,873 - CCNA_02618 0.58 +0.5 2,766,878 - CCNA_02618 0.59 -0.4 2,766,883 + CCNA_02618 0.60 -0.2 2,766,887 - CCNA_02618 0.61 -1.3 2,766,924 + CCNA_02618 0.69 -2.1 2,766,924 + CCNA_02618 0.69 -1.9 2,766,929 + CCNA_02618 0.70 -1.5 2,766,932 - CCNA_02618 0.70 -0.3 2,766,937 + CCNA_02618 0.72 +2.1 2,766,937 - CCNA_02618 0.72 +0.8 2,766,946 + CCNA_02618 0.73 -0.4 2,766,947 + CCNA_02618 0.74 +0.7 2,766,962 + CCNA_02618 0.77 -0.6 2,766,962 + CCNA_02618 0.77 +0.1 2,766,962 + CCNA_02618 0.77 -2.1 2,766,970 - CCNA_02618 0.79 -0.0 2,766,970 - CCNA_02618 0.79 +0.3 2,766,979 + CCNA_02618 0.80 -1.0 2,766,987 - CCNA_02618 0.82 +0.6 2,766,996 - CCNA_02618 0.84 -0.5 2,767,011 - CCNA_02618 0.87 +0.0 2,767,209 + +0.1 2,767,223 + +0.1 2,767,295 - -0.8 2,767,317 + CCNA_02619 0.12 +0.5 2,767,332 - CCNA_02619 0.14 +0.7 2,767,349 - CCNA_02619 0.16 -0.7 2,767,414 + CCNA_02619 0.23 +0.6 2,767,421 + CCNA_02619 0.24 +0.6 2,767,421 + CCNA_02619 0.24 +0.5 2,767,434 + CCNA_02619 0.25 +0.5 2,767,443 - CCNA_02619 0.26 -0.1 2,767,479 + CCNA_02619 0.30 +0.4 2,767,480 - CCNA_02619 0.30 +0.6 2,767,492 + CCNA_02619 0.32 -0.5 2,767,492 + CCNA_02619 0.32 +0.1 2,767,492 + CCNA_02619 0.32 +0.5 2,767,500 - CCNA_02619 0.32 +0.7 2,767,500 - CCNA_02619 0.32 +0.5 2,767,500 - CCNA_02619 0.32 +0.0 2,767,500 - CCNA_02619 0.32 +0.5 2,767,500 - CCNA_02619 0.32 -0.3 2,767,510 + CCNA_02619 0.34 +0.2 2,767,512 + CCNA_02619 0.34 +0.1 2,767,601 + CCNA_02619 0.44 +0.5 2,767,609 - CCNA_02619 0.44 -0.3 2,767,617 + CCNA_02619 0.45 +0.4 2,767,629 + CCNA_02619 0.47 +0.2 2,767,637 - CCNA_02619 0.48 +0.2 2,767,656 - CCNA_02619 0.50 +0.4 2,767,718 + CCNA_02619 0.57 -0.4 2,767,718 + CCNA_02619 0.57 +1.0 2,767,726 - CCNA_02619 0.57 +1.0 2,767,732 - CCNA_02619 0.58 -0.6 2,767,736 + CCNA_02619 0.58 +0.4 2,767,742 - CCNA_02619 0.59 +0.4 2,767,744 - CCNA_02619 0.59 -0.7 2,767,769 + CCNA_02619 0.62 +0.6 2,767,770 + CCNA_02619 0.62 +0.3 2,767,770 + CCNA_02619 0.62 +0.9 2,767,770 + CCNA_02619 0.62 +1.4 2,767,778 - CCNA_02619 0.63 +0.1 2,767,778 - CCNA_02619 0.63 +0.6 2,767,778 - CCNA_02619 0.63 +0.4 2,767,809 - CCNA_02619 0.67 -0.5 2,767,877 + CCNA_02619 0.74 +0.6 2,767,877 + CCNA_02619 0.74 +1.1 2,767,943 + CCNA_02619 0.81 -0.3 2,767,964 + CCNA_02619 0.84 +0.2 2,767,991 + CCNA_02619 0.87 +0.5
Or see this region's nucleotide sequence