Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02603 and CCNA_02604 are separated by 81 nucleotides CCNA_02604 and CCNA_02605 are separated by 92 nucleotides CCNA_02605 and CCNA_02606 are separated by 42 nucleotides
CCNA_02603: CCNA_02603 - hypothetical protein, at 2,748,535 to 2,749,821
_02603
CCNA_02604: CCNA_02604 - host cell attachment protein, at 2,749,903 to 2,750,319
_02604
CCNA_02605: CCNA_02605 - LasT-family rRNA methylase, at 2,750,412 to 2,751,203
_02605
CCNA_02606: CCNA_02606 - hybrid sensor histidine kinase/receiver domain protein, at 2,751,246 to 2,753,765
_02606
Position (kb)
2749
2750
2751 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2748.971 kb on + strand, within CCNA_02603 at 2748.971 kb on + strand, within CCNA_02603 at 2748.979 kb on - strand, within CCNA_02603 at 2748.979 kb on - strand, within CCNA_02603 at 2748.981 kb on + strand, within CCNA_02603 at 2748.984 kb on - strand, within CCNA_02603 at 2749.016 kb on - strand, within CCNA_02603 at 2749.030 kb on + strand, within CCNA_02603 at 2749.038 kb on - strand, within CCNA_02603 at 2749.080 kb on - strand, within CCNA_02603 at 2749.098 kb on + strand, within CCNA_02603 at 2749.115 kb on - strand, within CCNA_02603 at 2749.203 kb on + strand, within CCNA_02603 at 2749.266 kb on + strand, within CCNA_02603 at 2749.266 kb on + strand, within CCNA_02603 at 2749.266 kb on + strand, within CCNA_02603 at 2749.266 kb on + strand, within CCNA_02603 at 2749.274 kb on - strand, within CCNA_02603 at 2749.274 kb on - strand, within CCNA_02603 at 2749.274 kb on - strand, within CCNA_02603 at 2749.274 kb on - strand, within CCNA_02603 at 2749.305 kb on - strand, within CCNA_02603 at 2749.350 kb on - strand, within CCNA_02603 at 2749.350 kb on - strand, within CCNA_02603 at 2749.389 kb on + strand, within CCNA_02603 at 2749.389 kb on + strand, within CCNA_02603 at 2749.389 kb on + strand, within CCNA_02603 at 2749.389 kb on + strand, within CCNA_02603 at 2749.389 kb on + strand, within CCNA_02603 at 2749.389 kb on + strand, within CCNA_02603 at 2749.397 kb on - strand, within CCNA_02603 at 2749.397 kb on - strand, within CCNA_02603 at 2749.398 kb on + strand, within CCNA_02603 at 2749.402 kb on - strand, within CCNA_02603 at 2749.404 kb on + strand, within CCNA_02603 at 2749.404 kb on + strand, within CCNA_02603 at 2749.411 kb on + strand, within CCNA_02603 at 2749.412 kb on + strand, within CCNA_02603 at 2749.412 kb on - strand, within CCNA_02603 at 2749.412 kb on - strand, within CCNA_02603 at 2749.412 kb on - strand, within CCNA_02603 at 2749.412 kb on - strand, within CCNA_02603 at 2749.451 kb on + strand, within CCNA_02603 at 2749.456 kb on + strand, within CCNA_02603 at 2749.479 kb on - strand, within CCNA_02603 at 2749.482 kb on + strand, within CCNA_02603 at 2749.482 kb on - strand, within CCNA_02603 at 2749.521 kb on + strand, within CCNA_02603 at 2749.542 kb on + strand, within CCNA_02603 at 2749.542 kb on + strand, within CCNA_02603 at 2749.550 kb on - strand, within CCNA_02603 at 2749.550 kb on - strand, within CCNA_02603 at 2749.550 kb on - strand, within CCNA_02603 at 2749.550 kb on - strand, within CCNA_02603 at 2749.550 kb on - strand, within CCNA_02603 at 2749.550 kb on - strand, within CCNA_02603 at 2749.550 kb on - strand, within CCNA_02603 at 2749.550 kb on - strand, within CCNA_02603 at 2749.550 kb on - strand, within CCNA_02603 at 2749.584 kb on + strand, within CCNA_02603 at 2749.616 kb on + strand, within CCNA_02603 at 2749.624 kb on - strand, within CCNA_02603 at 2749.634 kb on - strand, within CCNA_02603 at 2749.693 kb on - strand at 2749.702 kb on + strand at 2749.727 kb on + strand at 2749.735 kb on - strand at 2749.735 kb on - strand at 2749.761 kb on + strand at 2749.769 kb on - strand at 2749.775 kb on + strand at 2749.788 kb on - strand at 2749.885 kb on + strand at 2749.893 kb on - strand at 2749.903 kb on - strand at 2749.903 kb on - strand at 2750.014 kb on + strand, within CCNA_02604 at 2750.038 kb on - strand, within CCNA_02604 at 2750.068 kb on - strand, within CCNA_02604 at 2750.083 kb on - strand, within CCNA_02604 at 2750.117 kb on - strand, within CCNA_02604 at 2750.143 kb on + strand, within CCNA_02604 at 2750.143 kb on + strand, within CCNA_02604 at 2750.151 kb on - strand, within CCNA_02604 at 2750.161 kb on - strand, within CCNA_02604 at 2750.198 kb on + strand, within CCNA_02604 at 2750.198 kb on + strand, within CCNA_02604 at 2750.206 kb on - strand, within CCNA_02604 at 2750.206 kb on - strand, within CCNA_02604 at 2750.254 kb on - strand, within CCNA_02604 at 2750.256 kb on + strand, within CCNA_02604 at 2750.264 kb on - strand, within CCNA_02604 at 2750.298 kb on + strand at 2750.306 kb on - strand at 2750.306 kb on - strand at 2750.306 kb on - strand at 2750.306 kb on - strand at 2750.344 kb on + strand at 2750.344 kb on + strand at 2750.409 kb on + strand at 2750.409 kb on + strand at 2750.409 kb on + strand at 2750.409 kb on + strand at 2750.409 kb on + strand at 2750.417 kb on - strand at 2750.417 kb on - strand at 2750.417 kb on - strand at 2750.417 kb on - strand at 2750.417 kb on - strand at 2750.417 kb on - strand at 2750.417 kb on - strand at 2750.417 kb on - strand at 2750.417 kb on - strand at 2750.417 kb on - strand at 2750.417 kb on - strand at 2750.417 kb on - strand at 2750.425 kb on + strand at 2750.433 kb on - strand at 2750.460 kb on + strand at 2750.507 kb on + strand, within CCNA_02605 at 2750.507 kb on + strand, within CCNA_02605 at 2750.508 kb on - strand, within CCNA_02605 at 2750.515 kb on - strand, within CCNA_02605 at 2750.532 kb on + strand, within CCNA_02605 at 2750.532 kb on + strand, within CCNA_02605 at 2750.611 kb on + strand, within CCNA_02605 at 2750.611 kb on + strand, within CCNA_02605 at 2750.618 kb on + strand, within CCNA_02605 at 2750.619 kb on - strand, within CCNA_02605 at 2750.685 kb on - strand, within CCNA_02605 at 2750.735 kb on - strand, within CCNA_02605 at 2750.737 kb on + strand, within CCNA_02605 at 2750.737 kb on + strand, within CCNA_02605 at 2750.745 kb on - strand, within CCNA_02605 at 2750.749 kb on - strand, within CCNA_02605 at 2750.799 kb on - strand, within CCNA_02605 at 2750.799 kb on - strand, within CCNA_02605 at 2750.809 kb on - strand, within CCNA_02605 at 2750.809 kb on - strand, within CCNA_02605 at 2750.809 kb on - strand, within CCNA_02605 at 2750.844 kb on - strand, within CCNA_02605 at 2750.870 kb on - strand, within CCNA_02605 at 2750.906 kb on + strand, within CCNA_02605 at 2750.906 kb on + strand, within CCNA_02605 at 2750.908 kb on + strand, within CCNA_02605 at 2750.925 kb on + strand, within CCNA_02605 at 2750.950 kb on + strand, within CCNA_02605 at 2750.958 kb on - strand, within CCNA_02605 at 2750.969 kb on - strand, within CCNA_02605 at 2751.004 kb on + strand, within CCNA_02605 at 2751.021 kb on + strand, within CCNA_02605 at 2751.042 kb on - strand, within CCNA_02605 at 2751.061 kb on - strand, within CCNA_02605 at 2751.061 kb on - strand, within CCNA_02605 at 2751.063 kb on + strand, within CCNA_02605 at 2751.074 kb on + strand, within CCNA_02605 at 2751.135 kb on + strand at 2751.169 kb on - strand at 2751.181 kb on + strand at 2751.199 kb on + strand at 2751.276 kb on - strand at 2751.299 kb on - strand at 2751.301 kb on + strand at 2751.301 kb on + strand at 2751.303 kb on - strand at 2751.304 kb on - strand at 2751.305 kb on + strand at 2751.308 kb on - strand at 2751.314 kb on - strand at 2751.314 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,748,971 + CCNA_02603 0.34 -0.1 2,748,971 + CCNA_02603 0.34 -0.9 2,748,979 - CCNA_02603 0.34 -0.6 2,748,979 - CCNA_02603 0.34 +0.4 2,748,981 + CCNA_02603 0.35 -3.1 2,748,984 - CCNA_02603 0.35 -0.5 2,749,016 - CCNA_02603 0.37 -2.9 2,749,030 + CCNA_02603 0.38 -0.0 2,749,038 - CCNA_02603 0.39 -1.5 2,749,080 - CCNA_02603 0.42 -1.9 2,749,098 + CCNA_02603 0.44 +2.3 2,749,115 - CCNA_02603 0.45 -0.4 2,749,203 + CCNA_02603 0.52 +0.1 2,749,266 + CCNA_02603 0.57 -0.4 2,749,266 + CCNA_02603 0.57 +0.6 2,749,266 + CCNA_02603 0.57 +1.1 2,749,266 + CCNA_02603 0.57 -0.5 2,749,274 - CCNA_02603 0.57 -0.5 2,749,274 - CCNA_02603 0.57 +0.1 2,749,274 - CCNA_02603 0.57 +0.1 2,749,274 - CCNA_02603 0.57 -0.4 2,749,305 - CCNA_02603 0.60 -1.0 2,749,350 - CCNA_02603 0.63 -0.7 2,749,350 - CCNA_02603 0.63 +0.2 2,749,389 + CCNA_02603 0.66 +0.1 2,749,389 + CCNA_02603 0.66 +0.8 2,749,389 + CCNA_02603 0.66 -0.4 2,749,389 + CCNA_02603 0.66 -0.6 2,749,389 + CCNA_02603 0.66 +1.5 2,749,389 + CCNA_02603 0.66 +0.6 2,749,397 - CCNA_02603 0.67 +1.3 2,749,397 - CCNA_02603 0.67 -0.3 2,749,398 + CCNA_02603 0.67 +0.6 2,749,402 - CCNA_02603 0.67 -0.6 2,749,404 + CCNA_02603 0.68 +0.0 2,749,404 + CCNA_02603 0.68 -0.6 2,749,411 + CCNA_02603 0.68 -0.3 2,749,412 + CCNA_02603 0.68 -1.5 2,749,412 - CCNA_02603 0.68 -0.7 2,749,412 - CCNA_02603 0.68 -0.3 2,749,412 - CCNA_02603 0.68 -0.4 2,749,412 - CCNA_02603 0.68 -0.7 2,749,451 + CCNA_02603 0.71 +0.1 2,749,456 + CCNA_02603 0.72 -0.5 2,749,479 - CCNA_02603 0.73 +0.2 2,749,482 + CCNA_02603 0.74 +1.1 2,749,482 - CCNA_02603 0.74 -2.9 2,749,521 + CCNA_02603 0.77 -1.1 2,749,542 + CCNA_02603 0.78 +0.9 2,749,542 + CCNA_02603 0.78 +2.2 2,749,550 - CCNA_02603 0.79 -0.8 2,749,550 - CCNA_02603 0.79 -1.7 2,749,550 - CCNA_02603 0.79 -1.3 2,749,550 - CCNA_02603 0.79 -0.2 2,749,550 - CCNA_02603 0.79 +0.6 2,749,550 - CCNA_02603 0.79 +0.5 2,749,550 - CCNA_02603 0.79 -0.9 2,749,550 - CCNA_02603 0.79 +0.2 2,749,550 - CCNA_02603 0.79 +0.5 2,749,584 + CCNA_02603 0.82 -0.3 2,749,616 + CCNA_02603 0.84 -0.3 2,749,624 - CCNA_02603 0.85 +0.2 2,749,634 - CCNA_02603 0.85 +1.0 2,749,693 - +1.3 2,749,702 + -0.1 2,749,727 + -1.2 2,749,735 - -1.3 2,749,735 - -1.8 2,749,761 + +0.9 2,749,769 - -1.3 2,749,775 + +0.8 2,749,788 - +0.4 2,749,885 + +0.0 2,749,893 - -0.1 2,749,903 - -0.2 2,749,903 - +0.1 2,750,014 + CCNA_02604 0.27 +1.2 2,750,038 - CCNA_02604 0.32 +0.4 2,750,068 - CCNA_02604 0.40 +0.7 2,750,083 - CCNA_02604 0.43 -0.1 2,750,117 - CCNA_02604 0.51 -1.1 2,750,143 + CCNA_02604 0.58 -0.2 2,750,143 + CCNA_02604 0.58 +0.1 2,750,151 - CCNA_02604 0.59 -0.5 2,750,161 - CCNA_02604 0.62 -1.1 2,750,198 + CCNA_02604 0.71 +0.5 2,750,198 + CCNA_02604 0.71 +0.1 2,750,206 - CCNA_02604 0.73 +0.7 2,750,206 - CCNA_02604 0.73 +0.3 2,750,254 - CCNA_02604 0.84 -1.0 2,750,256 + CCNA_02604 0.85 -1.5 2,750,264 - CCNA_02604 0.87 +0.2 2,750,298 + -0.4 2,750,306 - -0.5 2,750,306 - +0.5 2,750,306 - +0.3 2,750,306 - +0.0 2,750,344 + -0.3 2,750,344 + +0.3 2,750,409 + +0.4 2,750,409 + +0.2 2,750,409 + -0.5 2,750,409 + +0.7 2,750,409 + -0.7 2,750,417 - -0.3 2,750,417 - -0.2 2,750,417 - +1.7 2,750,417 - -0.2 2,750,417 - -0.6 2,750,417 - +1.2 2,750,417 - +0.1 2,750,417 - +0.2 2,750,417 - +1.3 2,750,417 - -0.2 2,750,417 - +0.1 2,750,417 - +0.0 2,750,425 + -0.2 2,750,433 - +2.5 2,750,460 + +1.5 2,750,507 + CCNA_02605 0.12 -0.9 2,750,507 + CCNA_02605 0.12 -0.7 2,750,508 - CCNA_02605 0.12 +0.5 2,750,515 - CCNA_02605 0.13 +0.2 2,750,532 + CCNA_02605 0.15 -0.3 2,750,532 + CCNA_02605 0.15 -1.4 2,750,611 + CCNA_02605 0.25 -1.8 2,750,611 + CCNA_02605 0.25 -0.2 2,750,618 + CCNA_02605 0.26 +0.2 2,750,619 - CCNA_02605 0.26 +0.7 2,750,685 - CCNA_02605 0.34 +0.5 2,750,735 - CCNA_02605 0.41 +0.2 2,750,737 + CCNA_02605 0.41 +0.3 2,750,737 + CCNA_02605 0.41 +2.7 2,750,745 - CCNA_02605 0.42 +0.8 2,750,749 - CCNA_02605 0.43 +1.6 2,750,799 - CCNA_02605 0.49 +0.8 2,750,799 - CCNA_02605 0.49 +0.1 2,750,809 - CCNA_02605 0.50 +1.2 2,750,809 - CCNA_02605 0.50 +0.2 2,750,809 - CCNA_02605 0.50 -0.6 2,750,844 - CCNA_02605 0.55 -0.7 2,750,870 - CCNA_02605 0.58 +0.0 2,750,906 + CCNA_02605 0.62 -0.1 2,750,906 + CCNA_02605 0.62 -0.8 2,750,908 + CCNA_02605 0.63 -2.6 2,750,925 + CCNA_02605 0.65 +0.1 2,750,950 + CCNA_02605 0.68 -0.6 2,750,958 - CCNA_02605 0.69 +0.1 2,750,969 - CCNA_02605 0.70 -2.5 2,751,004 + CCNA_02605 0.75 +0.3 2,751,021 + CCNA_02605 0.77 -1.7 2,751,042 - CCNA_02605 0.80 +1.1 2,751,061 - CCNA_02605 0.82 -1.2 2,751,061 - CCNA_02605 0.82 +0.0 2,751,063 + CCNA_02605 0.82 +0.7 2,751,074 + CCNA_02605 0.84 -0.7 2,751,135 + -0.1 2,751,169 - -0.3 2,751,181 + +0.2 2,751,199 + -0.1 2,751,276 - +0.0 2,751,299 - +0.8 2,751,301 + +0.4 2,751,301 + +0.6 2,751,303 - +0.2 2,751,304 - +1.1 2,751,305 + -0.2 2,751,308 - +0.4 2,751,314 - +1.5 2,751,314 - +0.7
Or see this region's nucleotide sequence