Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02571 and CCNA_02572 are separated by 188 nucleotides CCNA_02572 and CCNA_02573 are separated by 2 nucleotides CCNA_02573 and CCNA_02574 overlap by 14 nucleotides
CCNA_02571: CCNA_02571 - major facilitator superfamily transporter, at 2,722,855 to 2,724,348
_02571
CCNA_02572: CCNA_02572 - adenylosuccinate lyase, at 2,724,537 to 2,725,847
_02572
CCNA_02573: CCNA_02573 - proline hydroxylase, at 2,725,850 to 2,726,593
_02573
CCNA_02574: CCNA_02574 - MUG-like uracil-DNA glycosylase family protein, at 2,726,580 to 2,727,155
_02574
Position (kb)
2724
2725
2726 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2723.547 kb on + strand, within CCNA_02571 at 2723.547 kb on + strand, within CCNA_02571 at 2723.566 kb on + strand, within CCNA_02571 at 2723.578 kb on - strand, within CCNA_02571 at 2723.596 kb on + strand, within CCNA_02571 at 2723.596 kb on + strand, within CCNA_02571 at 2723.596 kb on + strand, within CCNA_02571 at 2723.604 kb on - strand, within CCNA_02571 at 2723.604 kb on - strand, within CCNA_02571 at 2723.608 kb on + strand, within CCNA_02571 at 2723.631 kb on + strand, within CCNA_02571 at 2723.645 kb on + strand, within CCNA_02571 at 2723.670 kb on - strand, within CCNA_02571 at 2723.681 kb on + strand, within CCNA_02571 at 2723.687 kb on + strand, within CCNA_02571 at 2723.688 kb on - strand, within CCNA_02571 at 2723.689 kb on - strand, within CCNA_02571 at 2723.689 kb on - strand, within CCNA_02571 at 2723.689 kb on - strand, within CCNA_02571 at 2723.695 kb on - strand, within CCNA_02571 at 2723.720 kb on - strand, within CCNA_02571 at 2723.757 kb on + strand, within CCNA_02571 at 2723.770 kb on - strand, within CCNA_02571 at 2723.798 kb on - strand, within CCNA_02571 at 2723.802 kb on + strand, within CCNA_02571 at 2723.803 kb on - strand, within CCNA_02571 at 2723.809 kb on + strand, within CCNA_02571 at 2723.809 kb on + strand, within CCNA_02571 at 2723.809 kb on + strand, within CCNA_02571 at 2723.809 kb on + strand, within CCNA_02571 at 2723.809 kb on + strand, within CCNA_02571 at 2723.809 kb on + strand, within CCNA_02571 at 2723.809 kb on + strand, within CCNA_02571 at 2723.809 kb on + strand, within CCNA_02571 at 2723.810 kb on - strand, within CCNA_02571 at 2723.812 kb on - strand, within CCNA_02571 at 2723.812 kb on - strand, within CCNA_02571 at 2723.817 kb on - strand, within CCNA_02571 at 2723.817 kb on - strand, within CCNA_02571 at 2723.817 kb on - strand, within CCNA_02571 at 2723.817 kb on - strand, within CCNA_02571 at 2723.817 kb on - strand, within CCNA_02571 at 2723.817 kb on - strand, within CCNA_02571 at 2723.828 kb on + strand, within CCNA_02571 at 2723.836 kb on - strand, within CCNA_02571 at 2723.855 kb on - strand, within CCNA_02571 at 2723.895 kb on + strand, within CCNA_02571 at 2723.895 kb on + strand, within CCNA_02571 at 2723.903 kb on - strand, within CCNA_02571 at 2723.950 kb on - strand, within CCNA_02571 at 2723.961 kb on - strand, within CCNA_02571 at 2723.961 kb on - strand, within CCNA_02571 at 2723.990 kb on - strand, within CCNA_02571 at 2724.003 kb on - strand, within CCNA_02571 at 2724.032 kb on + strand, within CCNA_02571 at 2724.037 kb on + strand, within CCNA_02571 at 2724.082 kb on + strand, within CCNA_02571 at 2724.086 kb on - strand, within CCNA_02571 at 2724.145 kb on + strand, within CCNA_02571 at 2724.153 kb on - strand, within CCNA_02571 at 2724.153 kb on - strand, within CCNA_02571 at 2724.153 kb on - strand, within CCNA_02571 at 2724.161 kb on + strand, within CCNA_02571 at 2724.169 kb on - strand, within CCNA_02571 at 2724.183 kb on + strand, within CCNA_02571 at 2724.191 kb on - strand, within CCNA_02571 at 2724.212 kb on - strand at 2724.216 kb on + strand at 2724.216 kb on + strand at 2724.216 kb on + strand at 2724.216 kb on + strand at 2724.216 kb on + strand at 2724.216 kb on + strand at 2724.224 kb on - strand at 2724.224 kb on - strand at 2724.224 kb on - strand at 2724.224 kb on - strand at 2724.224 kb on - strand at 2724.224 kb on - strand at 2724.257 kb on - strand at 2724.276 kb on + strand at 2724.281 kb on + strand at 2724.286 kb on + strand at 2724.294 kb on - strand at 2724.294 kb on - strand at 2724.294 kb on - strand at 2724.326 kb on - strand at 2724.327 kb on - strand at 2724.327 kb on - strand at 2724.327 kb on - strand at 2724.327 kb on - strand at 2724.327 kb on - strand at 2724.350 kb on - strand at 2724.384 kb on + strand at 2724.400 kb on + strand at 2724.404 kb on + strand at 2724.472 kb on + strand at 2724.477 kb on + strand at 2724.485 kb on - strand at 2724.497 kb on + strand at 2724.585 kb on - strand at 2724.599 kb on + strand at 2724.644 kb on + strand at 2724.702 kb on + strand, within CCNA_02572 at 2724.702 kb on + strand, within CCNA_02572 at 2724.702 kb on + strand, within CCNA_02572 at 2724.702 kb on + strand, within CCNA_02572 at 2724.710 kb on - strand, within CCNA_02572 at 2724.710 kb on - strand, within CCNA_02572 at 2724.751 kb on + strand, within CCNA_02572 at 2724.855 kb on - strand, within CCNA_02572 at 2724.884 kb on + strand, within CCNA_02572 at 2724.900 kb on - strand, within CCNA_02572 at 2724.928 kb on + strand, within CCNA_02572 at 2724.991 kb on + strand, within CCNA_02572 at 2724.999 kb on - strand, within CCNA_02572 at 2725.021 kb on - strand, within CCNA_02572 at 2725.033 kb on + strand, within CCNA_02572 at 2725.133 kb on + strand, within CCNA_02572 at 2725.176 kb on + strand, within CCNA_02572 at 2725.184 kb on + strand, within CCNA_02572 at 2725.317 kb on + strand, within CCNA_02572 at 2725.354 kb on + strand, within CCNA_02572 at 2725.362 kb on - strand, within CCNA_02572 at 2725.397 kb on - strand, within CCNA_02572 at 2725.458 kb on - strand, within CCNA_02572 at 2725.468 kb on - strand, within CCNA_02572 at 2725.468 kb on - strand, within CCNA_02572 at 2725.483 kb on + strand, within CCNA_02572 at 2725.507 kb on + strand, within CCNA_02572 at 2725.512 kb on + strand, within CCNA_02572 at 2725.673 kb on + strand, within CCNA_02572 at 2725.681 kb on - strand, within CCNA_02572 at 2725.681 kb on - strand, within CCNA_02572 at 2725.750 kb on + strand at 2725.896 kb on - strand at 2725.938 kb on + strand, within CCNA_02573 at 2725.991 kb on - strand, within CCNA_02573 at 2725.991 kb on - strand, within CCNA_02573 at 2725.991 kb on - strand, within CCNA_02573 at 2726.039 kb on + strand, within CCNA_02573 at 2726.088 kb on - strand, within CCNA_02573 at 2726.140 kb on - strand, within CCNA_02573 at 2726.174 kb on - strand, within CCNA_02573 at 2726.224 kb on - strand, within CCNA_02573 at 2726.224 kb on - strand, within CCNA_02573 at 2726.226 kb on + strand, within CCNA_02573 at 2726.234 kb on - strand, within CCNA_02573 at 2726.281 kb on + strand, within CCNA_02573 at 2726.293 kb on + strand, within CCNA_02573 at 2726.319 kb on + strand, within CCNA_02573 at 2726.325 kb on + strand, within CCNA_02573 at 2726.364 kb on + strand, within CCNA_02573 at 2726.364 kb on + strand, within CCNA_02573 at 2726.370 kb on + strand, within CCNA_02573 at 2726.372 kb on - strand, within CCNA_02573 at 2726.378 kb on - strand, within CCNA_02573 at 2726.384 kb on + strand, within CCNA_02573 at 2726.419 kb on + strand, within CCNA_02573 at 2726.459 kb on - strand, within CCNA_02573 at 2726.479 kb on - strand, within CCNA_02573 at 2726.481 kb on + strand, within CCNA_02573 at 2726.481 kb on + strand, within CCNA_02573 at 2726.497 kb on + strand, within CCNA_02573 at 2726.542 kb on - strand at 2726.592 kb on + strand at 2726.602 kb on - strand at 2726.644 kb on - strand, within CCNA_02574 at 2726.681 kb on + strand, within CCNA_02574 at 2726.689 kb on - strand, within CCNA_02574 at 2726.689 kb on - strand, within CCNA_02574 at 2726.689 kb on - strand, within CCNA_02574 at 2726.689 kb on - strand, within CCNA_02574 at 2726.703 kb on + strand, within CCNA_02574 at 2726.747 kb on - strand, within CCNA_02574 at 2726.772 kb on + strand, within CCNA_02574
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,723,547 + CCNA_02571 0.46 -0.3 2,723,547 + CCNA_02571 0.46 +0.5 2,723,566 + CCNA_02571 0.48 +0.3 2,723,578 - CCNA_02571 0.48 -0.8 2,723,596 + CCNA_02571 0.50 -1.8 2,723,596 + CCNA_02571 0.50 -0.8 2,723,596 + CCNA_02571 0.50 +0.8 2,723,604 - CCNA_02571 0.50 -0.5 2,723,604 - CCNA_02571 0.50 -0.7 2,723,608 + CCNA_02571 0.50 -1.4 2,723,631 + CCNA_02571 0.52 -0.6 2,723,645 + CCNA_02571 0.53 -0.8 2,723,670 - CCNA_02571 0.55 -2.2 2,723,681 + CCNA_02571 0.55 -1.7 2,723,687 + CCNA_02571 0.56 +0.2 2,723,688 - CCNA_02571 0.56 -1.5 2,723,689 - CCNA_02571 0.56 +1.7 2,723,689 - CCNA_02571 0.56 +1.9 2,723,689 - CCNA_02571 0.56 -1.0 2,723,695 - CCNA_02571 0.56 -0.6 2,723,720 - CCNA_02571 0.58 -0.9 2,723,757 + CCNA_02571 0.60 +0.1 2,723,770 - CCNA_02571 0.61 -0.2 2,723,798 - CCNA_02571 0.63 -0.3 2,723,802 + CCNA_02571 0.63 -1.1 2,723,803 - CCNA_02571 0.63 -0.5 2,723,809 + CCNA_02571 0.64 +0.4 2,723,809 + CCNA_02571 0.64 +0.5 2,723,809 + CCNA_02571 0.64 -1.0 2,723,809 + CCNA_02571 0.64 -0.6 2,723,809 + CCNA_02571 0.64 -0.2 2,723,809 + CCNA_02571 0.64 -1.2 2,723,809 + CCNA_02571 0.64 +0.5 2,723,809 + CCNA_02571 0.64 -0.3 2,723,810 - CCNA_02571 0.64 -0.2 2,723,812 - CCNA_02571 0.64 -1.3 2,723,812 - CCNA_02571 0.64 +0.6 2,723,817 - CCNA_02571 0.64 -0.3 2,723,817 - CCNA_02571 0.64 +1.4 2,723,817 - CCNA_02571 0.64 -0.2 2,723,817 - CCNA_02571 0.64 -0.2 2,723,817 - CCNA_02571 0.64 -2.0 2,723,817 - CCNA_02571 0.64 -1.1 2,723,828 + CCNA_02571 0.65 +1.5 2,723,836 - CCNA_02571 0.66 +1.5 2,723,855 - CCNA_02571 0.67 -1.6 2,723,895 + CCNA_02571 0.70 -1.2 2,723,895 + CCNA_02571 0.70 -1.7 2,723,903 - CCNA_02571 0.70 -0.8 2,723,950 - CCNA_02571 0.73 +0.3 2,723,961 - CCNA_02571 0.74 -0.1 2,723,961 - CCNA_02571 0.74 +1.3 2,723,990 - CCNA_02571 0.76 -2.1 2,724,003 - CCNA_02571 0.77 +0.4 2,724,032 + CCNA_02571 0.79 +0.6 2,724,037 + CCNA_02571 0.79 -0.8 2,724,082 + CCNA_02571 0.82 +0.2 2,724,086 - CCNA_02571 0.82 -1.5 2,724,145 + CCNA_02571 0.86 -0.1 2,724,153 - CCNA_02571 0.87 -1.1 2,724,153 - CCNA_02571 0.87 +1.3 2,724,153 - CCNA_02571 0.87 -0.7 2,724,161 + CCNA_02571 0.87 -0.6 2,724,169 - CCNA_02571 0.88 +0.3 2,724,183 + CCNA_02571 0.89 +1.1 2,724,191 - CCNA_02571 0.89 -0.6 2,724,212 - -0.9 2,724,216 + +0.3 2,724,216 + -1.6 2,724,216 + +0.1 2,724,216 + -0.5 2,724,216 + +0.1 2,724,216 + +0.1 2,724,224 - -0.9 2,724,224 - -0.9 2,724,224 - -0.7 2,724,224 - +0.3 2,724,224 - -0.2 2,724,224 - -0.7 2,724,257 - +0.3 2,724,276 + -0.0 2,724,281 + +0.5 2,724,286 + -0.3 2,724,294 - -0.1 2,724,294 - +0.1 2,724,294 - -0.1 2,724,326 - +0.2 2,724,327 - -0.0 2,724,327 - -0.3 2,724,327 - +1.2 2,724,327 - +0.3 2,724,327 - +0.8 2,724,350 - +0.1 2,724,384 + -1.3 2,724,400 + +0.7 2,724,404 + -0.8 2,724,472 + -0.9 2,724,477 + +1.7 2,724,485 - -0.1 2,724,497 + +1.4 2,724,585 - +1.2 2,724,599 + -1.5 2,724,644 + -1.3 2,724,702 + CCNA_02572 0.13 -0.6 2,724,702 + CCNA_02572 0.13 +0.4 2,724,702 + CCNA_02572 0.13 +0.7 2,724,702 + CCNA_02572 0.13 -1.7 2,724,710 - CCNA_02572 0.13 -0.6 2,724,710 - CCNA_02572 0.13 -1.1 2,724,751 + CCNA_02572 0.16 -1.6 2,724,855 - CCNA_02572 0.24 -0.9 2,724,884 + CCNA_02572 0.26 +1.0 2,724,900 - CCNA_02572 0.28 +0.1 2,724,928 + CCNA_02572 0.30 -2.1 2,724,991 + CCNA_02572 0.35 -1.9 2,724,999 - CCNA_02572 0.35 -0.5 2,725,021 - CCNA_02572 0.37 +0.3 2,725,033 + CCNA_02572 0.38 -0.5 2,725,133 + CCNA_02572 0.45 -0.7 2,725,176 + CCNA_02572 0.49 -0.9 2,725,184 + CCNA_02572 0.49 -1.2 2,725,317 + CCNA_02572 0.59 -2.3 2,725,354 + CCNA_02572 0.62 -1.6 2,725,362 - CCNA_02572 0.63 +0.1 2,725,397 - CCNA_02572 0.66 -0.2 2,725,458 - CCNA_02572 0.70 +0.9 2,725,468 - CCNA_02572 0.71 -0.5 2,725,468 - CCNA_02572 0.71 -1.6 2,725,483 + CCNA_02572 0.72 -0.6 2,725,507 + CCNA_02572 0.74 -3.1 2,725,512 + CCNA_02572 0.74 +0.3 2,725,673 + CCNA_02572 0.87 +0.0 2,725,681 - CCNA_02572 0.87 -2.0 2,725,681 - CCNA_02572 0.87 +1.7 2,725,750 + +0.5 2,725,896 - -0.3 2,725,938 + CCNA_02573 0.12 +0.9 2,725,991 - CCNA_02573 0.19 -0.5 2,725,991 - CCNA_02573 0.19 +0.1 2,725,991 - CCNA_02573 0.19 -1.1 2,726,039 + CCNA_02573 0.25 +0.6 2,726,088 - CCNA_02573 0.32 -0.7 2,726,140 - CCNA_02573 0.39 -0.3 2,726,174 - CCNA_02573 0.44 -0.0 2,726,224 - CCNA_02573 0.50 -0.5 2,726,224 - CCNA_02573 0.50 +0.1 2,726,226 + CCNA_02573 0.51 +0.2 2,726,234 - CCNA_02573 0.52 -0.3 2,726,281 + CCNA_02573 0.58 -0.3 2,726,293 + CCNA_02573 0.60 -0.7 2,726,319 + CCNA_02573 0.63 +0.2 2,726,325 + CCNA_02573 0.64 +0.1 2,726,364 + CCNA_02573 0.69 +0.7 2,726,364 + CCNA_02573 0.69 -0.1 2,726,370 + CCNA_02573 0.70 -0.1 2,726,372 - CCNA_02573 0.70 -0.6 2,726,378 - CCNA_02573 0.71 +0.4 2,726,384 + CCNA_02573 0.72 -0.7 2,726,419 + CCNA_02573 0.76 +1.3 2,726,459 - CCNA_02573 0.82 +0.1 2,726,479 - CCNA_02573 0.85 -0.3 2,726,481 + CCNA_02573 0.85 -0.3 2,726,481 + CCNA_02573 0.85 +0.1 2,726,497 + CCNA_02573 0.87 +0.2 2,726,542 - -0.5 2,726,592 + +0.0 2,726,602 - -0.7 2,726,644 - CCNA_02574 0.11 -0.2 2,726,681 + CCNA_02574 0.18 +0.4 2,726,689 - CCNA_02574 0.19 +0.4 2,726,689 - CCNA_02574 0.19 -0.6 2,726,689 - CCNA_02574 0.19 -0.1 2,726,689 - CCNA_02574 0.19 -0.9 2,726,703 + CCNA_02574 0.21 -0.2 2,726,747 - CCNA_02574 0.29 +0.1 2,726,772 + CCNA_02574 0.33 +1.5
Or see this region's nucleotide sequence