Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02557

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02555 and CCNA_02556 are separated by 53 nucleotidesCCNA_02556 and CCNA_02557 are separated by 120 nucleotidesCCNA_02557 and CCNA_02558 are separated by 12 nucleotides CCNA_02555: CCNA_02555 - adenosine 5'-monophosphoramidase, at 2,702,662 to 2,703,096 _02555 CCNA_02556: CCNA_02556 - hypothetical protein, at 2,703,150 to 2,703,731 _02556 CCNA_02557: CCNA_02557 - acyl-CoA thioesterase II, at 2,703,852 to 2,704,640 _02557 CCNA_02558: CCNA_02558 - enantioselective peptide amidase, at 2,704,653 to 2,706,239 _02558 Position (kb) 2703 2704 2705Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2702.867 kb on + strand, within CCNA_02555at 2702.869 kb on - strand, within CCNA_02555at 2702.897 kb on + strand, within CCNA_02555at 2702.943 kb on + strand, within CCNA_02555at 2702.978 kb on + strand, within CCNA_02555at 2703.003 kb on - strand, within CCNA_02555at 2703.011 kb on + strand, within CCNA_02555at 2703.019 kb on - strand, within CCNA_02555at 2703.021 kb on - strand, within CCNA_02555at 2703.056 kb on + strandat 2703.061 kb on + strandat 2703.091 kb on + strandat 2703.093 kb on - strandat 2703.099 kb on - strandat 2703.101 kb on + strandat 2703.109 kb on + strandat 2703.144 kb on - strandat 2703.149 kb on - strandat 2703.149 kb on - strandat 2703.167 kb on + strandat 2703.238 kb on + strand, within CCNA_02556at 2703.238 kb on - strand, within CCNA_02556at 2703.246 kb on - strand, within CCNA_02556at 2703.330 kb on + strand, within CCNA_02556at 2703.330 kb on + strand, within CCNA_02556at 2703.330 kb on + strand, within CCNA_02556at 2703.330 kb on + strand, within CCNA_02556at 2703.338 kb on - strand, within CCNA_02556at 2703.338 kb on - strand, within CCNA_02556at 2703.338 kb on - strand, within CCNA_02556at 2703.353 kb on - strand, within CCNA_02556at 2703.381 kb on + strand, within CCNA_02556at 2703.421 kb on - strand, within CCNA_02556at 2703.429 kb on + strand, within CCNA_02556at 2703.441 kb on + strand, within CCNA_02556at 2703.441 kb on + strand, within CCNA_02556at 2703.459 kb on - strand, within CCNA_02556at 2703.492 kb on + strand, within CCNA_02556at 2703.497 kb on + strand, within CCNA_02556at 2703.497 kb on + strand, within CCNA_02556at 2703.505 kb on - strand, within CCNA_02556at 2703.583 kb on - strand, within CCNA_02556at 2703.589 kb on + strand, within CCNA_02556at 2703.610 kb on + strand, within CCNA_02556at 2703.644 kb on + strand, within CCNA_02556at 2703.644 kb on + strand, within CCNA_02556at 2703.650 kb on + strand, within CCNA_02556at 2703.652 kb on - strand, within CCNA_02556at 2703.652 kb on - strand, within CCNA_02556at 2703.652 kb on - strand, within CCNA_02556at 2703.704 kb on + strandat 2703.704 kb on + strandat 2703.712 kb on - strandat 2703.712 kb on - strandat 2703.712 kb on - strandat 2703.747 kb on - strandat 2703.750 kb on - strandat 2703.850 kb on + strandat 2703.857 kb on + strandat 2703.857 kb on + strandat 2703.860 kb on + strandat 2703.865 kb on - strandat 2703.865 kb on - strandat 2703.866 kb on - strandat 2703.933 kb on - strand, within CCNA_02557at 2703.933 kb on - strand, within CCNA_02557at 2703.945 kb on + strand, within CCNA_02557at 2703.954 kb on + strand, within CCNA_02557at 2703.987 kb on - strand, within CCNA_02557at 2704.011 kb on + strand, within CCNA_02557at 2704.011 kb on + strand, within CCNA_02557at 2704.011 kb on + strand, within CCNA_02557at 2704.012 kb on - strand, within CCNA_02557at 2704.019 kb on - strand, within CCNA_02557at 2704.111 kb on + strand, within CCNA_02557at 2704.119 kb on - strand, within CCNA_02557at 2704.152 kb on + strand, within CCNA_02557at 2704.157 kb on + strand, within CCNA_02557at 2704.160 kb on - strand, within CCNA_02557at 2704.170 kb on + strand, within CCNA_02557at 2704.203 kb on - strand, within CCNA_02557at 2704.217 kb on + strand, within CCNA_02557at 2704.247 kb on - strand, within CCNA_02557at 2704.249 kb on - strand, within CCNA_02557at 2704.269 kb on + strand, within CCNA_02557at 2704.293 kb on - strand, within CCNA_02557at 2704.293 kb on - strand, within CCNA_02557at 2704.293 kb on - strand, within CCNA_02557at 2704.349 kb on - strand, within CCNA_02557at 2704.419 kb on + strand, within CCNA_02557at 2704.419 kb on + strand, within CCNA_02557at 2704.427 kb on - strand, within CCNA_02557at 2704.433 kb on - strand, within CCNA_02557at 2704.445 kb on + strand, within CCNA_02557at 2704.445 kb on + strand, within CCNA_02557at 2704.453 kb on - strand, within CCNA_02557at 2704.461 kb on + strand, within CCNA_02557at 2704.469 kb on - strand, within CCNA_02557at 2704.535 kb on + strand, within CCNA_02557at 2704.656 kb on - strandat 2704.740 kb on + strandat 2704.742 kb on + strandat 2704.788 kb on - strandat 2704.810 kb on - strandat 2704.817 kb on - strand, within CCNA_02558at 2704.824 kb on - strand, within CCNA_02558at 2704.834 kb on + strand, within CCNA_02558at 2704.857 kb on - strand, within CCNA_02558at 2704.859 kb on + strand, within CCNA_02558at 2704.864 kb on + strand, within CCNA_02558at 2704.867 kb on - strand, within CCNA_02558at 2704.872 kb on - strand, within CCNA_02558at 2704.949 kb on + strand, within CCNA_02558at 2704.959 kb on + strand, within CCNA_02558at 2704.959 kb on + strand, within CCNA_02558at 2704.959 kb on + strand, within CCNA_02558at 2704.967 kb on - strand, within CCNA_02558at 2704.967 kb on - strand, within CCNA_02558at 2705.075 kb on + strand, within CCNA_02558at 2705.083 kb on - strand, within CCNA_02558at 2705.092 kb on - strand, within CCNA_02558at 2705.101 kb on + strand, within CCNA_02558at 2705.101 kb on + strand, within CCNA_02558at 2705.106 kb on + strand, within CCNA_02558at 2705.109 kb on - strand, within CCNA_02558at 2705.109 kb on - strand, within CCNA_02558at 2705.111 kb on + strand, within CCNA_02558at 2705.111 kb on + strand, within CCNA_02558at 2705.116 kb on + strand, within CCNA_02558at 2705.157 kb on - strand, within CCNA_02558at 2705.167 kb on + strand, within CCNA_02558at 2705.180 kb on + strand, within CCNA_02558at 2705.192 kb on + strand, within CCNA_02558at 2705.221 kb on + strand, within CCNA_02558at 2705.245 kb on - strand, within CCNA_02558at 2705.394 kb on + strand, within CCNA_02558at 2705.397 kb on - strand, within CCNA_02558at 2705.404 kb on + strand, within CCNA_02558at 2705.412 kb on - strand, within CCNA_02558at 2705.427 kb on + strand, within CCNA_02558at 2705.439 kb on + strand, within CCNA_02558at 2705.464 kb on + strand, within CCNA_02558at 2705.523 kb on - strand, within CCNA_02558at 2705.531 kb on + strand, within CCNA_02558at 2705.531 kb on + strand, within CCNA_02558at 2705.531 kb on + strand, within CCNA_02558at 2705.531 kb on + strand, within CCNA_02558at 2705.531 kb on + strand, within CCNA_02558at 2705.531 kb on + strand, within CCNA_02558at 2705.531 kb on + strand, within CCNA_02558at 2705.531 kb on + strand, within CCNA_02558at 2705.531 kb on + strand, within CCNA_02558at 2705.531 kb on + strand, within CCNA_02558at 2705.531 kb on + strand, within CCNA_02558at 2705.539 kb on - strand, within CCNA_02558at 2705.539 kb on - strand, within CCNA_02558at 2705.539 kb on - strand, within CCNA_02558at 2705.539 kb on - strand, within CCNA_02558at 2705.539 kb on - strand, within CCNA_02558at 2705.539 kb on - strand, within CCNA_02558at 2705.539 kb on - strand, within CCNA_02558at 2705.539 kb on - strand, within CCNA_02558at 2705.539 kb on - strand, within CCNA_02558at 2705.539 kb on - strand, within CCNA_02558at 2705.539 kb on - strand, within CCNA_02558at 2705.539 kb on - strand, within CCNA_02558at 2705.559 kb on - strand, within CCNA_02558at 2705.581 kb on - strand, within CCNA_02558at 2705.581 kb on - strand, within CCNA_02558at 2705.581 kb on - strand, within CCNA_02558at 2705.581 kb on - strand, within CCNA_02558at 2705.581 kb on - strand, within CCNA_02558at 2705.591 kb on + strand, within CCNA_02558at 2705.638 kb on - strand, within CCNA_02558

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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2,702,867 + CCNA_02555 0.47 +0.1
2,702,869 - CCNA_02555 0.48 -0.6
2,702,897 + CCNA_02555 0.54 +0.1
2,702,943 + CCNA_02555 0.65 +0.2
2,702,978 + CCNA_02555 0.73 +0.1
2,703,003 - CCNA_02555 0.78 -0.3
2,703,011 + CCNA_02555 0.80 +0.4
2,703,019 - CCNA_02555 0.82 -0.0
2,703,021 - CCNA_02555 0.83 -0.2
2,703,056 + -0.1
2,703,061 + +0.9
2,703,091 + -0.3
2,703,093 - -2.1
2,703,099 - +1.1
2,703,101 + +0.4
2,703,109 + +0.2
2,703,144 - -0.2
2,703,149 - -0.1
2,703,149 - +2.1
2,703,167 + +0.2
2,703,238 + CCNA_02556 0.15 +0.4
2,703,238 - CCNA_02556 0.15 -1.2
2,703,246 - CCNA_02556 0.16 -0.0
2,703,330 + CCNA_02556 0.31 +0.6
2,703,330 + CCNA_02556 0.31 -0.2
2,703,330 + CCNA_02556 0.31 +0.2
2,703,330 + CCNA_02556 0.31 +0.6
2,703,338 - CCNA_02556 0.32 -0.5
2,703,338 - CCNA_02556 0.32 +1.0
2,703,338 - CCNA_02556 0.32 +0.0
2,703,353 - CCNA_02556 0.35 -0.7
2,703,381 + CCNA_02556 0.40 +0.3
2,703,421 - CCNA_02556 0.47 +0.6
2,703,429 + CCNA_02556 0.48 +0.6
2,703,441 + CCNA_02556 0.50 -0.3
2,703,441 + CCNA_02556 0.50 +0.3
2,703,459 - CCNA_02556 0.53 -0.3
2,703,492 + CCNA_02556 0.59 +0.5
2,703,497 + CCNA_02556 0.60 +0.0
2,703,497 + CCNA_02556 0.60 +1.1
2,703,505 - CCNA_02556 0.61 -0.1
2,703,583 - CCNA_02556 0.74 +1.1
2,703,589 + CCNA_02556 0.75 -0.1
2,703,610 + CCNA_02556 0.79 +0.4
2,703,644 + CCNA_02556 0.85 +0.3
2,703,644 + CCNA_02556 0.85 -0.0
2,703,650 + CCNA_02556 0.86 -0.7
2,703,652 - CCNA_02556 0.86 +0.4
2,703,652 - CCNA_02556 0.86 +0.8
2,703,652 - CCNA_02556 0.86 +0.1
2,703,704 + -0.7
2,703,704 + +0.9
2,703,712 - +0.1
2,703,712 - +1.0
2,703,712 - +0.9
2,703,747 - +0.2
2,703,750 - -0.7
2,703,850 + +0.6
2,703,857 + -0.0
2,703,857 + -0.3
2,703,860 + -1.4
2,703,865 - -0.1
2,703,865 - -0.3
2,703,866 - +0.2
2,703,933 - CCNA_02557 0.10 -0.1
2,703,933 - CCNA_02557 0.10 +0.2
2,703,945 + CCNA_02557 0.12 -0.2
2,703,954 + CCNA_02557 0.13 +0.9
2,703,987 - CCNA_02557 0.17 +0.2
2,704,011 + CCNA_02557 0.20 -1.1
2,704,011 + CCNA_02557 0.20 -0.4
2,704,011 + CCNA_02557 0.20 -0.8
2,704,012 - CCNA_02557 0.20 -0.6
2,704,019 - CCNA_02557 0.21 +1.0
2,704,111 + CCNA_02557 0.33 -0.6
2,704,119 - CCNA_02557 0.34 +1.1
2,704,152 + CCNA_02557 0.38 +0.1
2,704,157 + CCNA_02557 0.39 +0.1
2,704,160 - CCNA_02557 0.39 -0.7
2,704,170 + CCNA_02557 0.40 +0.2
2,704,203 - CCNA_02557 0.44 +0.3
2,704,217 + CCNA_02557 0.46 -0.1
2,704,247 - CCNA_02557 0.50 -0.6
2,704,249 - CCNA_02557 0.50 -0.0
2,704,269 + CCNA_02557 0.53 +0.3
2,704,293 - CCNA_02557 0.56 -0.5
2,704,293 - CCNA_02557 0.56 +0.1
2,704,293 - CCNA_02557 0.56 -0.2
2,704,349 - CCNA_02557 0.63 +0.2
2,704,419 + CCNA_02557 0.72 -0.9
2,704,419 + CCNA_02557 0.72 +0.7
2,704,427 - CCNA_02557 0.73 +0.5
2,704,433 - CCNA_02557 0.74 +0.5
2,704,445 + CCNA_02557 0.75 -0.7
2,704,445 + CCNA_02557 0.75 +0.9
2,704,453 - CCNA_02557 0.76 -0.6
2,704,461 + CCNA_02557 0.77 +0.1
2,704,469 - CCNA_02557 0.78 -0.3
2,704,535 + CCNA_02557 0.87 +0.0
2,704,656 - -0.1
2,704,740 + +0.2
2,704,742 + +0.2
2,704,788 - -1.1
2,704,810 - -0.5
2,704,817 - CCNA_02558 0.10 +0.1
2,704,824 - CCNA_02558 0.11 -0.1
2,704,834 + CCNA_02558 0.11 -0.5
2,704,857 - CCNA_02558 0.13 +0.2
2,704,859 + CCNA_02558 0.13 +0.3
2,704,864 + CCNA_02558 0.13 -3.2
2,704,867 - CCNA_02558 0.13 -0.5
2,704,872 - CCNA_02558 0.14 -0.7
2,704,949 + CCNA_02558 0.19 -0.3
2,704,959 + CCNA_02558 0.19 -1.0
2,704,959 + CCNA_02558 0.19 +0.6
2,704,959 + CCNA_02558 0.19 -0.4
2,704,967 - CCNA_02558 0.20 +1.4
2,704,967 - CCNA_02558 0.20 -0.1
2,705,075 + CCNA_02558 0.27 +1.2
2,705,083 - CCNA_02558 0.27 -1.1
2,705,092 - CCNA_02558 0.28 -1.0
2,705,101 + CCNA_02558 0.28 -0.1
2,705,101 + CCNA_02558 0.28 +0.6
2,705,106 + CCNA_02558 0.29 +1.5
2,705,109 - CCNA_02558 0.29 -0.0
2,705,109 - CCNA_02558 0.29 +1.2
2,705,111 + CCNA_02558 0.29 +0.2
2,705,111 + CCNA_02558 0.29 -0.5
2,705,116 + CCNA_02558 0.29 +1.3
2,705,157 - CCNA_02558 0.32 -0.6
2,705,167 + CCNA_02558 0.32 +1.0
2,705,180 + CCNA_02558 0.33 -0.4
2,705,192 + CCNA_02558 0.34 -1.4
2,705,221 + CCNA_02558 0.36 +0.7
2,705,245 - CCNA_02558 0.37 +0.6
2,705,394 + CCNA_02558 0.47 -0.1
2,705,397 - CCNA_02558 0.47 -0.1
2,705,404 + CCNA_02558 0.47 -0.7
2,705,412 - CCNA_02558 0.48 -0.1
2,705,427 + CCNA_02558 0.49 -0.1
2,705,439 + CCNA_02558 0.50 +0.0
2,705,464 + CCNA_02558 0.51 -0.6
2,705,523 - CCNA_02558 0.55 +0.0
2,705,531 + CCNA_02558 0.55 +0.4
2,705,531 + CCNA_02558 0.55 -1.2
2,705,531 + CCNA_02558 0.55 +1.0
2,705,531 + CCNA_02558 0.55 +0.0
2,705,531 + CCNA_02558 0.55 +0.2
2,705,531 + CCNA_02558 0.55 +0.6
2,705,531 + CCNA_02558 0.55 -0.8
2,705,531 + CCNA_02558 0.55 -1.0
2,705,531 + CCNA_02558 0.55 +0.4
2,705,531 + CCNA_02558 0.55 -0.3
2,705,531 + CCNA_02558 0.55 +0.1
2,705,539 - CCNA_02558 0.56 +0.2
2,705,539 - CCNA_02558 0.56 +1.0
2,705,539 - CCNA_02558 0.56 -0.3
2,705,539 - CCNA_02558 0.56 -0.2
2,705,539 - CCNA_02558 0.56 +0.6
2,705,539 - CCNA_02558 0.56 -0.6
2,705,539 - CCNA_02558 0.56 -0.4
2,705,539 - CCNA_02558 0.56 -0.7
2,705,539 - CCNA_02558 0.56 -0.4
2,705,539 - CCNA_02558 0.56 -1.0
2,705,539 - CCNA_02558 0.56 -1.0
2,705,539 - CCNA_02558 0.56 -0.0
2,705,559 - CCNA_02558 0.57 -0.9
2,705,581 - CCNA_02558 0.58 +1.0
2,705,581 - CCNA_02558 0.58 +0.5
2,705,581 - CCNA_02558 0.58 +0.4
2,705,581 - CCNA_02558 0.58 +1.1
2,705,581 - CCNA_02558 0.58 +0.6
2,705,591 + CCNA_02558 0.59 -1.0
2,705,638 - CCNA_02558 0.62 +1.3

Or see this region's nucleotide sequence