Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02555 and CCNA_02556 are separated by 53 nucleotides CCNA_02556 and CCNA_02557 are separated by 120 nucleotides CCNA_02557 and CCNA_02558 are separated by 12 nucleotides
CCNA_02555: CCNA_02555 - adenosine 5'-monophosphoramidase, at 2,702,662 to 2,703,096
_02555
CCNA_02556: CCNA_02556 - hypothetical protein, at 2,703,150 to 2,703,731
_02556
CCNA_02557: CCNA_02557 - acyl-CoA thioesterase II, at 2,703,852 to 2,704,640
_02557
CCNA_02558: CCNA_02558 - enantioselective peptide amidase, at 2,704,653 to 2,706,239
_02558
Position (kb)
2703
2704
2705 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2702.867 kb on + strand, within CCNA_02555 at 2702.869 kb on - strand, within CCNA_02555 at 2702.897 kb on + strand, within CCNA_02555 at 2702.943 kb on + strand, within CCNA_02555 at 2702.978 kb on + strand, within CCNA_02555 at 2703.003 kb on - strand, within CCNA_02555 at 2703.011 kb on + strand, within CCNA_02555 at 2703.019 kb on - strand, within CCNA_02555 at 2703.021 kb on - strand, within CCNA_02555 at 2703.056 kb on + strand at 2703.061 kb on + strand at 2703.091 kb on + strand at 2703.093 kb on - strand at 2703.099 kb on - strand at 2703.101 kb on + strand at 2703.109 kb on + strand at 2703.144 kb on - strand at 2703.149 kb on - strand at 2703.149 kb on - strand at 2703.167 kb on + strand at 2703.238 kb on + strand, within CCNA_02556 at 2703.238 kb on - strand, within CCNA_02556 at 2703.246 kb on - strand, within CCNA_02556 at 2703.330 kb on + strand, within CCNA_02556 at 2703.330 kb on + strand, within CCNA_02556 at 2703.330 kb on + strand, within CCNA_02556 at 2703.330 kb on + strand, within CCNA_02556 at 2703.338 kb on - strand, within CCNA_02556 at 2703.338 kb on - strand, within CCNA_02556 at 2703.338 kb on - strand, within CCNA_02556 at 2703.353 kb on - strand, within CCNA_02556 at 2703.381 kb on + strand, within CCNA_02556 at 2703.421 kb on - strand, within CCNA_02556 at 2703.429 kb on + strand, within CCNA_02556 at 2703.441 kb on + strand, within CCNA_02556 at 2703.441 kb on + strand, within CCNA_02556 at 2703.459 kb on - strand, within CCNA_02556 at 2703.492 kb on + strand, within CCNA_02556 at 2703.497 kb on + strand, within CCNA_02556 at 2703.497 kb on + strand, within CCNA_02556 at 2703.505 kb on - strand, within CCNA_02556 at 2703.583 kb on - strand, within CCNA_02556 at 2703.589 kb on + strand, within CCNA_02556 at 2703.610 kb on + strand, within CCNA_02556 at 2703.644 kb on + strand, within CCNA_02556 at 2703.644 kb on + strand, within CCNA_02556 at 2703.650 kb on + strand, within CCNA_02556 at 2703.652 kb on - strand, within CCNA_02556 at 2703.652 kb on - strand, within CCNA_02556 at 2703.652 kb on - strand, within CCNA_02556 at 2703.704 kb on + strand at 2703.704 kb on + strand at 2703.712 kb on - strand at 2703.712 kb on - strand at 2703.712 kb on - strand at 2703.747 kb on - strand at 2703.750 kb on - strand at 2703.850 kb on + strand at 2703.857 kb on + strand at 2703.857 kb on + strand at 2703.860 kb on + strand at 2703.865 kb on - strand at 2703.865 kb on - strand at 2703.866 kb on - strand at 2703.933 kb on - strand, within CCNA_02557 at 2703.933 kb on - strand, within CCNA_02557 at 2703.945 kb on + strand, within CCNA_02557 at 2703.954 kb on + strand, within CCNA_02557 at 2703.987 kb on - strand, within CCNA_02557 at 2704.011 kb on + strand, within CCNA_02557 at 2704.011 kb on + strand, within CCNA_02557 at 2704.011 kb on + strand, within CCNA_02557 at 2704.012 kb on - strand, within CCNA_02557 at 2704.019 kb on - strand, within CCNA_02557 at 2704.111 kb on + strand, within CCNA_02557 at 2704.119 kb on - strand, within CCNA_02557 at 2704.152 kb on + strand, within CCNA_02557 at 2704.157 kb on + strand, within CCNA_02557 at 2704.160 kb on - strand, within CCNA_02557 at 2704.170 kb on + strand, within CCNA_02557 at 2704.203 kb on - strand, within CCNA_02557 at 2704.217 kb on + strand, within CCNA_02557 at 2704.247 kb on - strand, within CCNA_02557 at 2704.249 kb on - strand, within CCNA_02557 at 2704.269 kb on + strand, within CCNA_02557 at 2704.293 kb on - strand, within CCNA_02557 at 2704.293 kb on - strand, within CCNA_02557 at 2704.293 kb on - strand, within CCNA_02557 at 2704.349 kb on - strand, within CCNA_02557 at 2704.419 kb on + strand, within CCNA_02557 at 2704.419 kb on + strand, within CCNA_02557 at 2704.427 kb on - strand, within CCNA_02557 at 2704.433 kb on - strand, within CCNA_02557 at 2704.445 kb on + strand, within CCNA_02557 at 2704.445 kb on + strand, within CCNA_02557 at 2704.453 kb on - strand, within CCNA_02557 at 2704.461 kb on + strand, within CCNA_02557 at 2704.469 kb on - strand, within CCNA_02557 at 2704.535 kb on + strand, within CCNA_02557 at 2704.656 kb on - strand at 2704.740 kb on + strand at 2704.742 kb on + strand at 2704.788 kb on - strand at 2704.810 kb on - strand at 2704.817 kb on - strand, within CCNA_02558 at 2704.824 kb on - strand, within CCNA_02558 at 2704.834 kb on + strand, within CCNA_02558 at 2704.857 kb on - strand, within CCNA_02558 at 2704.859 kb on + strand, within CCNA_02558 at 2704.864 kb on + strand, within CCNA_02558 at 2704.867 kb on - strand, within CCNA_02558 at 2704.872 kb on - strand, within CCNA_02558 at 2704.949 kb on + strand, within CCNA_02558 at 2704.959 kb on + strand, within CCNA_02558 at 2704.959 kb on + strand, within CCNA_02558 at 2704.959 kb on + strand, within CCNA_02558 at 2704.967 kb on - strand, within CCNA_02558 at 2704.967 kb on - strand, within CCNA_02558 at 2705.075 kb on + strand, within CCNA_02558 at 2705.083 kb on - strand, within CCNA_02558 at 2705.092 kb on - strand, within CCNA_02558 at 2705.101 kb on + strand, within CCNA_02558 at 2705.101 kb on + strand, within CCNA_02558 at 2705.106 kb on + strand, within CCNA_02558 at 2705.109 kb on - strand, within CCNA_02558 at 2705.109 kb on - strand, within CCNA_02558 at 2705.111 kb on + strand, within CCNA_02558 at 2705.111 kb on + strand, within CCNA_02558 at 2705.116 kb on + strand, within CCNA_02558 at 2705.157 kb on - strand, within CCNA_02558 at 2705.167 kb on + strand, within CCNA_02558 at 2705.180 kb on + strand, within CCNA_02558 at 2705.192 kb on + strand, within CCNA_02558 at 2705.221 kb on + strand, within CCNA_02558 at 2705.245 kb on - strand, within CCNA_02558 at 2705.394 kb on + strand, within CCNA_02558 at 2705.397 kb on - strand, within CCNA_02558 at 2705.404 kb on + strand, within CCNA_02558 at 2705.412 kb on - strand, within CCNA_02558 at 2705.427 kb on + strand, within CCNA_02558 at 2705.439 kb on + strand, within CCNA_02558 at 2705.464 kb on + strand, within CCNA_02558 at 2705.523 kb on - strand, within CCNA_02558 at 2705.531 kb on + strand, within CCNA_02558 at 2705.531 kb on + strand, within CCNA_02558 at 2705.531 kb on + strand, within CCNA_02558 at 2705.531 kb on + strand, within CCNA_02558 at 2705.531 kb on + strand, within CCNA_02558 at 2705.531 kb on + strand, within CCNA_02558 at 2705.531 kb on + strand, within CCNA_02558 at 2705.531 kb on + strand, within CCNA_02558 at 2705.531 kb on + strand, within CCNA_02558 at 2705.531 kb on + strand, within CCNA_02558 at 2705.531 kb on + strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.559 kb on - strand, within CCNA_02558 at 2705.581 kb on - strand, within CCNA_02558 at 2705.581 kb on - strand, within CCNA_02558 at 2705.581 kb on - strand, within CCNA_02558 at 2705.581 kb on - strand, within CCNA_02558 at 2705.581 kb on - strand, within CCNA_02558 at 2705.591 kb on + strand, within CCNA_02558 at 2705.638 kb on - strand, within CCNA_02558
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,702,867 + CCNA_02555 0.47 +0.1 2,702,869 - CCNA_02555 0.48 -0.6 2,702,897 + CCNA_02555 0.54 +0.1 2,702,943 + CCNA_02555 0.65 +0.2 2,702,978 + CCNA_02555 0.73 +0.1 2,703,003 - CCNA_02555 0.78 -0.3 2,703,011 + CCNA_02555 0.80 +0.4 2,703,019 - CCNA_02555 0.82 -0.0 2,703,021 - CCNA_02555 0.83 -0.2 2,703,056 + -0.1 2,703,061 + +0.9 2,703,091 + -0.3 2,703,093 - -2.1 2,703,099 - +1.1 2,703,101 + +0.4 2,703,109 + +0.2 2,703,144 - -0.2 2,703,149 - -0.1 2,703,149 - +2.1 2,703,167 + +0.2 2,703,238 + CCNA_02556 0.15 +0.4 2,703,238 - CCNA_02556 0.15 -1.2 2,703,246 - CCNA_02556 0.16 -0.0 2,703,330 + CCNA_02556 0.31 +0.6 2,703,330 + CCNA_02556 0.31 -0.2 2,703,330 + CCNA_02556 0.31 +0.2 2,703,330 + CCNA_02556 0.31 +0.6 2,703,338 - CCNA_02556 0.32 -0.5 2,703,338 - CCNA_02556 0.32 +1.0 2,703,338 - CCNA_02556 0.32 +0.0 2,703,353 - CCNA_02556 0.35 -0.7 2,703,381 + CCNA_02556 0.40 +0.3 2,703,421 - CCNA_02556 0.47 +0.6 2,703,429 + CCNA_02556 0.48 +0.6 2,703,441 + CCNA_02556 0.50 -0.3 2,703,441 + CCNA_02556 0.50 +0.3 2,703,459 - CCNA_02556 0.53 -0.3 2,703,492 + CCNA_02556 0.59 +0.5 2,703,497 + CCNA_02556 0.60 +0.0 2,703,497 + CCNA_02556 0.60 +1.1 2,703,505 - CCNA_02556 0.61 -0.1 2,703,583 - CCNA_02556 0.74 +1.1 2,703,589 + CCNA_02556 0.75 -0.1 2,703,610 + CCNA_02556 0.79 +0.4 2,703,644 + CCNA_02556 0.85 +0.3 2,703,644 + CCNA_02556 0.85 -0.0 2,703,650 + CCNA_02556 0.86 -0.7 2,703,652 - CCNA_02556 0.86 +0.4 2,703,652 - CCNA_02556 0.86 +0.8 2,703,652 - CCNA_02556 0.86 +0.1 2,703,704 + -0.7 2,703,704 + +0.9 2,703,712 - +0.1 2,703,712 - +1.0 2,703,712 - +0.9 2,703,747 - +0.2 2,703,750 - -0.7 2,703,850 + +0.6 2,703,857 + -0.0 2,703,857 + -0.3 2,703,860 + -1.4 2,703,865 - -0.1 2,703,865 - -0.3 2,703,866 - +0.2 2,703,933 - CCNA_02557 0.10 -0.1 2,703,933 - CCNA_02557 0.10 +0.2 2,703,945 + CCNA_02557 0.12 -0.2 2,703,954 + CCNA_02557 0.13 +0.9 2,703,987 - CCNA_02557 0.17 +0.2 2,704,011 + CCNA_02557 0.20 -1.1 2,704,011 + CCNA_02557 0.20 -0.4 2,704,011 + CCNA_02557 0.20 -0.8 2,704,012 - CCNA_02557 0.20 -0.6 2,704,019 - CCNA_02557 0.21 +1.0 2,704,111 + CCNA_02557 0.33 -0.6 2,704,119 - CCNA_02557 0.34 +1.1 2,704,152 + CCNA_02557 0.38 +0.1 2,704,157 + CCNA_02557 0.39 +0.1 2,704,160 - CCNA_02557 0.39 -0.7 2,704,170 + CCNA_02557 0.40 +0.2 2,704,203 - CCNA_02557 0.44 +0.3 2,704,217 + CCNA_02557 0.46 -0.1 2,704,247 - CCNA_02557 0.50 -0.6 2,704,249 - CCNA_02557 0.50 -0.0 2,704,269 + CCNA_02557 0.53 +0.3 2,704,293 - CCNA_02557 0.56 -0.5 2,704,293 - CCNA_02557 0.56 +0.1 2,704,293 - CCNA_02557 0.56 -0.2 2,704,349 - CCNA_02557 0.63 +0.2 2,704,419 + CCNA_02557 0.72 -0.9 2,704,419 + CCNA_02557 0.72 +0.7 2,704,427 - CCNA_02557 0.73 +0.5 2,704,433 - CCNA_02557 0.74 +0.5 2,704,445 + CCNA_02557 0.75 -0.7 2,704,445 + CCNA_02557 0.75 +0.9 2,704,453 - CCNA_02557 0.76 -0.6 2,704,461 + CCNA_02557 0.77 +0.1 2,704,469 - CCNA_02557 0.78 -0.3 2,704,535 + CCNA_02557 0.87 +0.0 2,704,656 - -0.1 2,704,740 + +0.2 2,704,742 + +0.2 2,704,788 - -1.1 2,704,810 - -0.5 2,704,817 - CCNA_02558 0.10 +0.1 2,704,824 - CCNA_02558 0.11 -0.1 2,704,834 + CCNA_02558 0.11 -0.5 2,704,857 - CCNA_02558 0.13 +0.2 2,704,859 + CCNA_02558 0.13 +0.3 2,704,864 + CCNA_02558 0.13 -3.2 2,704,867 - CCNA_02558 0.13 -0.5 2,704,872 - CCNA_02558 0.14 -0.7 2,704,949 + CCNA_02558 0.19 -0.3 2,704,959 + CCNA_02558 0.19 -1.0 2,704,959 + CCNA_02558 0.19 +0.6 2,704,959 + CCNA_02558 0.19 -0.4 2,704,967 - CCNA_02558 0.20 +1.4 2,704,967 - CCNA_02558 0.20 -0.1 2,705,075 + CCNA_02558 0.27 +1.2 2,705,083 - CCNA_02558 0.27 -1.1 2,705,092 - CCNA_02558 0.28 -1.0 2,705,101 + CCNA_02558 0.28 -0.1 2,705,101 + CCNA_02558 0.28 +0.6 2,705,106 + CCNA_02558 0.29 +1.5 2,705,109 - CCNA_02558 0.29 -0.0 2,705,109 - CCNA_02558 0.29 +1.2 2,705,111 + CCNA_02558 0.29 +0.2 2,705,111 + CCNA_02558 0.29 -0.5 2,705,116 + CCNA_02558 0.29 +1.3 2,705,157 - CCNA_02558 0.32 -0.6 2,705,167 + CCNA_02558 0.32 +1.0 2,705,180 + CCNA_02558 0.33 -0.4 2,705,192 + CCNA_02558 0.34 -1.4 2,705,221 + CCNA_02558 0.36 +0.7 2,705,245 - CCNA_02558 0.37 +0.6 2,705,394 + CCNA_02558 0.47 -0.1 2,705,397 - CCNA_02558 0.47 -0.1 2,705,404 + CCNA_02558 0.47 -0.7 2,705,412 - CCNA_02558 0.48 -0.1 2,705,427 + CCNA_02558 0.49 -0.1 2,705,439 + CCNA_02558 0.50 +0.0 2,705,464 + CCNA_02558 0.51 -0.6 2,705,523 - CCNA_02558 0.55 +0.0 2,705,531 + CCNA_02558 0.55 +0.4 2,705,531 + CCNA_02558 0.55 -1.2 2,705,531 + CCNA_02558 0.55 +1.0 2,705,531 + CCNA_02558 0.55 +0.0 2,705,531 + CCNA_02558 0.55 +0.2 2,705,531 + CCNA_02558 0.55 +0.6 2,705,531 + CCNA_02558 0.55 -0.8 2,705,531 + CCNA_02558 0.55 -1.0 2,705,531 + CCNA_02558 0.55 +0.4 2,705,531 + CCNA_02558 0.55 -0.3 2,705,531 + CCNA_02558 0.55 +0.1 2,705,539 - CCNA_02558 0.56 +0.2 2,705,539 - CCNA_02558 0.56 +1.0 2,705,539 - CCNA_02558 0.56 -0.3 2,705,539 - CCNA_02558 0.56 -0.2 2,705,539 - CCNA_02558 0.56 +0.6 2,705,539 - CCNA_02558 0.56 -0.6 2,705,539 - CCNA_02558 0.56 -0.4 2,705,539 - CCNA_02558 0.56 -0.7 2,705,539 - CCNA_02558 0.56 -0.4 2,705,539 - CCNA_02558 0.56 -1.0 2,705,539 - CCNA_02558 0.56 -1.0 2,705,539 - CCNA_02558 0.56 -0.0 2,705,559 - CCNA_02558 0.57 -0.9 2,705,581 - CCNA_02558 0.58 +1.0 2,705,581 - CCNA_02558 0.58 +0.5 2,705,581 - CCNA_02558 0.58 +0.4 2,705,581 - CCNA_02558 0.58 +1.1 2,705,581 - CCNA_02558 0.58 +0.6 2,705,591 + CCNA_02558 0.59 -1.0 2,705,638 - CCNA_02558 0.62 +1.3
Or see this region's nucleotide sequence