Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02547 and CCNA_02548 are separated by 121 nucleotides CCNA_02548 and CCNA_02549 overlap by 4 nucleotides CCNA_02549 and CCNA_02550 are separated by 8 nucleotides
CCNA_02547: CCNA_02547 - response regulator receiver protein DivK, at 2,695,941 to 2,696,318
_02547
CCNA_02548: CCNA_02548 - hypothetical protein, at 2,696,440 to 2,697,087
_02548
CCNA_02549: CCNA_02549 - glucokinase, at 2,697,084 to 2,697,974
_02549
CCNA_02550: CCNA_02550 - DNA polymerase IV-kappa DinB, at 2,697,983 to 2,699,239
_02550
Position (kb)
2697
2698 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.326 kb on - strand at 2696.326 kb on - strand at 2696.395 kb on + strand at 2696.400 kb on + strand at 2696.401 kb on - strand at 2696.403 kb on - strand at 2696.403 kb on - strand at 2696.448 kb on + strand at 2696.466 kb on + strand at 2696.471 kb on + strand at 2696.479 kb on - strand at 2696.484 kb on - strand at 2696.491 kb on + strand at 2696.491 kb on + strand at 2696.499 kb on - strand at 2696.518 kb on + strand, within CCNA_02548 at 2696.526 kb on - strand, within CCNA_02548 at 2696.526 kb on - strand, within CCNA_02548 at 2696.529 kb on + strand, within CCNA_02548 at 2696.540 kb on + strand, within CCNA_02548 at 2696.540 kb on + strand, within CCNA_02548 at 2696.540 kb on + strand, within CCNA_02548 at 2696.548 kb on - strand, within CCNA_02548 at 2696.575 kb on - strand, within CCNA_02548 at 2696.575 kb on - strand, within CCNA_02548 at 2696.596 kb on - strand, within CCNA_02548 at 2696.596 kb on - strand, within CCNA_02548 at 2696.598 kb on + strand, within CCNA_02548 at 2696.618 kb on - strand, within CCNA_02548 at 2696.628 kb on - strand, within CCNA_02548 at 2696.692 kb on + strand, within CCNA_02548 at 2696.700 kb on - strand, within CCNA_02548 at 2696.705 kb on - strand, within CCNA_02548 at 2696.758 kb on + strand, within CCNA_02548 at 2696.781 kb on - strand, within CCNA_02548 at 2696.804 kb on + strand, within CCNA_02548 at 2696.819 kb on + strand, within CCNA_02548 at 2696.828 kb on + strand, within CCNA_02548 at 2696.835 kb on + strand, within CCNA_02548 at 2696.836 kb on + strand, within CCNA_02548 at 2696.844 kb on - strand, within CCNA_02548 at 2696.859 kb on - strand, within CCNA_02548 at 2696.859 kb on - strand, within CCNA_02548 at 2696.859 kb on - strand, within CCNA_02548 at 2696.860 kb on - strand, within CCNA_02548 at 2696.871 kb on - strand, within CCNA_02548 at 2696.872 kb on + strand, within CCNA_02548 at 2696.881 kb on - strand, within CCNA_02548 at 2696.888 kb on + strand, within CCNA_02548 at 2696.891 kb on - strand, within CCNA_02548 at 2696.891 kb on - strand, within CCNA_02548 at 2696.891 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.901 kb on - strand, within CCNA_02548 at 2696.991 kb on + strand, within CCNA_02548 at 2697.007 kb on - strand, within CCNA_02548 at 2697.007 kb on - strand, within CCNA_02548 at 2697.030 kb on - strand at 2697.030 kb on - strand at 2697.151 kb on + strand at 2697.221 kb on + strand, within CCNA_02549 at 2697.244 kb on - strand, within CCNA_02549 at 2697.244 kb on - strand, within CCNA_02549 at 2697.267 kb on + strand, within CCNA_02549 at 2697.267 kb on + strand, within CCNA_02549 at 2697.267 kb on + strand, within CCNA_02549 at 2697.269 kb on - strand, within CCNA_02549 at 2697.303 kb on + strand, within CCNA_02549 at 2697.306 kb on - strand, within CCNA_02549 at 2697.331 kb on - strand, within CCNA_02549 at 2697.338 kb on - strand, within CCNA_02549 at 2697.415 kb on - strand, within CCNA_02549 at 2697.496 kb on + strand, within CCNA_02549 at 2697.552 kb on + strand, within CCNA_02549 at 2697.561 kb on + strand, within CCNA_02549 at 2697.566 kb on + strand, within CCNA_02549 at 2697.566 kb on + strand, within CCNA_02549 at 2697.566 kb on + strand, within CCNA_02549 at 2697.569 kb on - strand, within CCNA_02549 at 2697.574 kb on - strand, within CCNA_02549 at 2697.577 kb on + strand, within CCNA_02549 at 2697.579 kb on - strand, within CCNA_02549 at 2697.587 kb on - strand, within CCNA_02549 at 2697.625 kb on + strand, within CCNA_02549 at 2697.713 kb on - strand, within CCNA_02549 at 2697.725 kb on - strand, within CCNA_02549 at 2697.735 kb on - strand, within CCNA_02549 at 2697.753 kb on + strand, within CCNA_02549 at 2697.758 kb on + strand, within CCNA_02549 at 2697.761 kb on - strand, within CCNA_02549 at 2697.764 kb on + strand, within CCNA_02549 at 2697.767 kb on - strand, within CCNA_02549 at 2697.802 kb on + strand, within CCNA_02549 at 2697.842 kb on + strand, within CCNA_02549 at 2697.905 kb on + strand at 2697.905 kb on + strand at 2697.905 kb on + strand at 2697.908 kb on - strand at 2697.912 kb on + strand at 2697.913 kb on - strand at 2697.913 kb on - strand at 2697.920 kb on - strand at 2697.936 kb on - strand at 2697.948 kb on + strand at 2697.952 kb on + strand at 2697.956 kb on - strand at 2697.956 kb on - strand at 2697.976 kb on - strand at 2697.989 kb on - strand at 2698.007 kb on + strand at 2698.106 kb on - strand at 2698.118 kb on + strand, within CCNA_02550 at 2698.130 kb on + strand, within CCNA_02550 at 2698.148 kb on - strand, within CCNA_02550 at 2698.188 kb on + strand, within CCNA_02550 at 2698.208 kb on + strand, within CCNA_02550 at 2698.210 kb on + strand, within CCNA_02550 at 2698.216 kb on - strand, within CCNA_02550 at 2698.218 kb on - strand, within CCNA_02550 at 2698.218 kb on - strand, within CCNA_02550 at 2698.255 kb on + strand, within CCNA_02550 at 2698.291 kb on + strand, within CCNA_02550 at 2698.380 kb on + strand, within CCNA_02550 at 2698.380 kb on + strand, within CCNA_02550 at 2698.380 kb on + strand, within CCNA_02550 at 2698.388 kb on - strand, within CCNA_02550 at 2698.390 kb on + strand, within CCNA_02550 at 2698.390 kb on + strand, within CCNA_02550 at 2698.390 kb on + strand, within CCNA_02550 at 2698.390 kb on + strand, within CCNA_02550 at 2698.390 kb on + strand, within CCNA_02550 at 2698.393 kb on - strand, within CCNA_02550 at 2698.393 kb on - strand, within CCNA_02550 at 2698.398 kb on - strand, within CCNA_02550 at 2698.413 kb on - strand, within CCNA_02550 at 2698.434 kb on + strand, within CCNA_02550 at 2698.436 kb on - strand, within CCNA_02550 at 2698.442 kb on - strand, within CCNA_02550 at 2698.470 kb on - strand, within CCNA_02550 at 2698.484 kb on + strand, within CCNA_02550 at 2698.487 kb on - strand, within CCNA_02550 at 2698.539 kb on - strand, within CCNA_02550 at 2698.546 kb on + strand, within CCNA_02550 at 2698.586 kb on + strand, within CCNA_02550 at 2698.594 kb on - strand, within CCNA_02550 at 2698.620 kb on - strand, within CCNA_02550 at 2698.620 kb on - strand, within CCNA_02550 at 2698.621 kb on - strand, within CCNA_02550 at 2698.658 kb on + strand, within CCNA_02550 at 2698.665 kb on - strand, within CCNA_02550 at 2698.670 kb on - strand, within CCNA_02550 at 2698.685 kb on - strand, within CCNA_02550 at 2698.695 kb on + strand, within CCNA_02550 at 2698.700 kb on + strand, within CCNA_02550 at 2698.708 kb on - strand, within CCNA_02550 at 2698.714 kb on + strand, within CCNA_02550 at 2698.768 kb on + strand, within CCNA_02550 at 2698.793 kb on - strand, within CCNA_02550 at 2698.795 kb on + strand, within CCNA_02550 at 2698.815 kb on - strand, within CCNA_02550 at 2698.862 kb on + strand, within CCNA_02550 at 2698.870 kb on - strand, within CCNA_02550 at 2698.935 kb on + strand, within CCNA_02550 at 2698.948 kb on - strand, within CCNA_02550 at 2698.950 kb on + strand, within CCNA_02550 at 2698.950 kb on + strand, within CCNA_02550 at 2698.958 kb on - strand, within CCNA_02550
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,696,318 + -0.5 2,696,318 + -1.7 2,696,318 + +0.1 2,696,318 + -0.8 2,696,318 + -1.3 2,696,318 + +0.0 2,696,326 - -0.3 2,696,326 - +0.2 2,696,395 + -0.9 2,696,400 + +0.7 2,696,401 - +0.8 2,696,403 - -0.4 2,696,403 - +1.9 2,696,448 + -0.2 2,696,466 + +0.1 2,696,471 + -0.9 2,696,479 - -0.8 2,696,484 - -1.1 2,696,491 + -0.3 2,696,491 + +0.0 2,696,499 - -0.5 2,696,518 + CCNA_02548 0.12 +0.1 2,696,526 - CCNA_02548 0.13 -0.1 2,696,526 - CCNA_02548 0.13 +1.0 2,696,529 + CCNA_02548 0.14 +0.3 2,696,540 + CCNA_02548 0.15 +1.4 2,696,540 + CCNA_02548 0.15 +0.4 2,696,540 + CCNA_02548 0.15 +2.0 2,696,548 - CCNA_02548 0.17 -0.2 2,696,575 - CCNA_02548 0.21 -0.5 2,696,575 - CCNA_02548 0.21 -0.0 2,696,596 - CCNA_02548 0.24 -0.8 2,696,596 - CCNA_02548 0.24 -0.7 2,696,598 + CCNA_02548 0.24 -0.8 2,696,618 - CCNA_02548 0.27 +0.1 2,696,628 - CCNA_02548 0.29 -0.3 2,696,692 + CCNA_02548 0.39 -0.2 2,696,700 - CCNA_02548 0.40 -0.6 2,696,705 - CCNA_02548 0.41 +0.0 2,696,758 + CCNA_02548 0.49 +0.3 2,696,781 - CCNA_02548 0.53 -0.1 2,696,804 + CCNA_02548 0.56 -0.7 2,696,819 + CCNA_02548 0.58 +0.1 2,696,828 + CCNA_02548 0.60 +0.7 2,696,835 + CCNA_02548 0.61 -0.5 2,696,836 + CCNA_02548 0.61 +0.6 2,696,844 - CCNA_02548 0.62 -0.3 2,696,859 - CCNA_02548 0.65 -0.2 2,696,859 - CCNA_02548 0.65 -0.0 2,696,859 - CCNA_02548 0.65 +0.8 2,696,860 - CCNA_02548 0.65 +0.1 2,696,871 - CCNA_02548 0.67 -0.6 2,696,872 + CCNA_02548 0.67 +0.2 2,696,881 - CCNA_02548 0.68 -0.3 2,696,888 + CCNA_02548 0.69 -0.4 2,696,891 - CCNA_02548 0.70 +0.9 2,696,891 - CCNA_02548 0.70 -1.0 2,696,891 - CCNA_02548 0.70 -0.2 2,696,896 - CCNA_02548 0.70 -0.0 2,696,896 - CCNA_02548 0.70 -0.2 2,696,896 - CCNA_02548 0.70 -1.2 2,696,896 - CCNA_02548 0.70 +0.6 2,696,896 - CCNA_02548 0.70 +0.6 2,696,896 - CCNA_02548 0.70 -0.9 2,696,901 - CCNA_02548 0.71 +0.3 2,696,991 + CCNA_02548 0.85 +0.5 2,697,007 - CCNA_02548 0.88 -0.5 2,697,007 - CCNA_02548 0.88 +0.0 2,697,030 - -0.0 2,697,030 - +0.1 2,697,151 + -0.1 2,697,221 + CCNA_02549 0.15 -2.0 2,697,244 - CCNA_02549 0.18 +0.1 2,697,244 - CCNA_02549 0.18 +0.2 2,697,267 + CCNA_02549 0.21 -0.1 2,697,267 + CCNA_02549 0.21 -0.5 2,697,267 + CCNA_02549 0.21 +1.7 2,697,269 - CCNA_02549 0.21 -0.5 2,697,303 + CCNA_02549 0.25 -0.4 2,697,306 - CCNA_02549 0.25 +0.0 2,697,331 - CCNA_02549 0.28 +0.1 2,697,338 - CCNA_02549 0.29 +0.1 2,697,415 - CCNA_02549 0.37 -1.3 2,697,496 + CCNA_02549 0.46 +1.0 2,697,552 + CCNA_02549 0.53 -0.0 2,697,561 + CCNA_02549 0.54 +0.3 2,697,566 + CCNA_02549 0.54 +1.0 2,697,566 + CCNA_02549 0.54 -0.4 2,697,566 + CCNA_02549 0.54 +0.4 2,697,569 - CCNA_02549 0.54 -0.1 2,697,574 - CCNA_02549 0.55 -0.2 2,697,577 + CCNA_02549 0.55 +0.1 2,697,579 - CCNA_02549 0.56 +0.2 2,697,587 - CCNA_02549 0.56 +0.1 2,697,625 + CCNA_02549 0.61 +0.1 2,697,713 - CCNA_02549 0.71 -1.9 2,697,725 - CCNA_02549 0.72 -0.2 2,697,735 - CCNA_02549 0.73 -0.0 2,697,753 + CCNA_02549 0.75 +1.5 2,697,758 + CCNA_02549 0.76 +0.1 2,697,761 - CCNA_02549 0.76 -0.6 2,697,764 + CCNA_02549 0.76 +0.5 2,697,767 - CCNA_02549 0.77 -0.5 2,697,802 + CCNA_02549 0.81 -0.9 2,697,842 + CCNA_02549 0.85 +0.4 2,697,905 + +0.4 2,697,905 + -0.3 2,697,905 + +0.1 2,697,908 - -0.4 2,697,912 + +0.1 2,697,913 - +1.3 2,697,913 - +1.0 2,697,920 - -1.9 2,697,936 - -1.5 2,697,948 + +0.2 2,697,952 + +0.1 2,697,956 - +0.7 2,697,956 - +0.3 2,697,976 - -0.8 2,697,989 - -0.4 2,698,007 + -0.3 2,698,106 - +1.7 2,698,118 + CCNA_02550 0.11 -1.0 2,698,130 + CCNA_02550 0.12 +1.1 2,698,148 - CCNA_02550 0.13 -1.1 2,698,188 + CCNA_02550 0.16 +0.2 2,698,208 + CCNA_02550 0.18 -0.0 2,698,210 + CCNA_02550 0.18 +0.1 2,698,216 - CCNA_02550 0.19 -0.7 2,698,218 - CCNA_02550 0.19 -0.3 2,698,218 - CCNA_02550 0.19 -2.1 2,698,255 + CCNA_02550 0.22 -0.1 2,698,291 + CCNA_02550 0.25 -0.0 2,698,380 + CCNA_02550 0.32 +0.3 2,698,380 + CCNA_02550 0.32 +1.1 2,698,380 + CCNA_02550 0.32 +0.7 2,698,388 - CCNA_02550 0.32 -0.2 2,698,390 + CCNA_02550 0.32 -0.5 2,698,390 + CCNA_02550 0.32 -0.9 2,698,390 + CCNA_02550 0.32 +0.6 2,698,390 + CCNA_02550 0.32 -0.5 2,698,390 + CCNA_02550 0.32 -0.5 2,698,393 - CCNA_02550 0.33 +0.7 2,698,393 - CCNA_02550 0.33 -0.8 2,698,398 - CCNA_02550 0.33 -0.3 2,698,413 - CCNA_02550 0.34 -2.6 2,698,434 + CCNA_02550 0.36 +0.3 2,698,436 - CCNA_02550 0.36 +0.8 2,698,442 - CCNA_02550 0.37 -0.4 2,698,470 - CCNA_02550 0.39 -0.1 2,698,484 + CCNA_02550 0.40 +0.4 2,698,487 - CCNA_02550 0.40 -0.8 2,698,539 - CCNA_02550 0.44 +0.3 2,698,546 + CCNA_02550 0.45 +0.7 2,698,586 + CCNA_02550 0.48 -0.1 2,698,594 - CCNA_02550 0.49 +1.3 2,698,620 - CCNA_02550 0.51 +0.0 2,698,620 - CCNA_02550 0.51 +0.6 2,698,621 - CCNA_02550 0.51 -2.0 2,698,658 + CCNA_02550 0.54 +0.5 2,698,665 - CCNA_02550 0.54 -0.1 2,698,670 - CCNA_02550 0.55 -0.2 2,698,685 - CCNA_02550 0.56 -0.8 2,698,695 + CCNA_02550 0.57 +0.9 2,698,700 + CCNA_02550 0.57 +0.4 2,698,708 - CCNA_02550 0.58 -0.7 2,698,714 + CCNA_02550 0.58 -0.1 2,698,768 + CCNA_02550 0.62 -1.6 2,698,793 - CCNA_02550 0.64 +0.5 2,698,795 + CCNA_02550 0.65 -0.9 2,698,815 - CCNA_02550 0.66 +0.7 2,698,862 + CCNA_02550 0.70 -1.0 2,698,870 - CCNA_02550 0.71 -0.5 2,698,935 + CCNA_02550 0.76 +1.0 2,698,948 - CCNA_02550 0.77 -0.0 2,698,950 + CCNA_02550 0.77 +1.4 2,698,950 + CCNA_02550 0.77 +1.1 2,698,958 - CCNA_02550 0.78 -0.1
Or see this region's nucleotide sequence