Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02546 and CCNA_02547 overlap by 4 nucleotides CCNA_02547 and CCNA_02548 are separated by 121 nucleotides CCNA_02548 and CCNA_02549 overlap by 4 nucleotides
CCNA_02546: CCNA_02546 - GGDEF/response regulator protein PleD, at 2,694,580 to 2,695,944
_02546
CCNA_02547: CCNA_02547 - response regulator receiver protein DivK, at 2,695,941 to 2,696,318
_02547
CCNA_02548: CCNA_02548 - hypothetical protein, at 2,696,440 to 2,697,087
_02548
CCNA_02549: CCNA_02549 - glucokinase, at 2,697,084 to 2,697,974
_02549
Position (kb)
2695
2696
2697 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2694.977 kb on + strand, within CCNA_02546 at 2694.984 kb on - strand, within CCNA_02546 at 2694.991 kb on + strand, within CCNA_02546 at 2694.999 kb on + strand, within CCNA_02546 at 2695.015 kb on - strand, within CCNA_02546 at 2695.027 kb on - strand, within CCNA_02546 at 2695.029 kb on + strand, within CCNA_02546 at 2695.121 kb on + strand, within CCNA_02546 at 2695.121 kb on + strand, within CCNA_02546 at 2695.126 kb on - strand, within CCNA_02546 at 2695.129 kb on - strand, within CCNA_02546 at 2695.129 kb on - strand, within CCNA_02546 at 2695.133 kb on + strand, within CCNA_02546 at 2695.217 kb on + strand, within CCNA_02546 at 2695.217 kb on + strand, within CCNA_02546 at 2695.225 kb on - strand, within CCNA_02546 at 2695.239 kb on - strand, within CCNA_02546 at 2695.250 kb on + strand, within CCNA_02546 at 2695.250 kb on + strand, within CCNA_02546 at 2695.258 kb on - strand, within CCNA_02546 at 2695.258 kb on - strand, within CCNA_02546 at 2695.292 kb on - strand, within CCNA_02546 at 2695.309 kb on + strand, within CCNA_02546 at 2695.309 kb on - strand, within CCNA_02546 at 2695.345 kb on - strand, within CCNA_02546 at 2695.345 kb on - strand, within CCNA_02546 at 2695.362 kb on + strand, within CCNA_02546 at 2695.378 kb on - strand, within CCNA_02546 at 2695.386 kb on + strand, within CCNA_02546 at 2695.386 kb on + strand, within CCNA_02546 at 2695.414 kb on + strand, within CCNA_02546 at 2695.436 kb on - strand, within CCNA_02546 at 2695.484 kb on - strand, within CCNA_02546 at 2695.484 kb on - strand, within CCNA_02546 at 2695.484 kb on - strand, within CCNA_02546 at 2695.503 kb on - strand, within CCNA_02546 at 2695.503 kb on - strand, within CCNA_02546 at 2695.527 kb on - strand, within CCNA_02546 at 2695.537 kb on + strand, within CCNA_02546 at 2695.584 kb on + strand, within CCNA_02546 at 2695.593 kb on - strand, within CCNA_02546 at 2695.609 kb on + strand, within CCNA_02546 at 2695.656 kb on + strand, within CCNA_02546 at 2695.685 kb on - strand, within CCNA_02546 at 2695.707 kb on - strand, within CCNA_02546 at 2695.751 kb on - strand, within CCNA_02546 at 2695.755 kb on + strand, within CCNA_02546 at 2695.820 kb on + strand at 2695.820 kb on + strand at 2695.820 kb on + strand at 2695.820 kb on + strand at 2695.828 kb on - strand at 2695.828 kb on - strand at 2695.828 kb on - strand at 2695.828 kb on - strand at 2695.833 kb on - strand at 2695.860 kb on + strand at 2695.862 kb on + strand at 2695.874 kb on + strand at 2695.875 kb on - strand at 2695.930 kb on + strand at 2695.930 kb on + strand at 2695.938 kb on - strand at 2695.938 kb on - strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.326 kb on - strand at 2696.326 kb on - strand at 2696.395 kb on + strand at 2696.400 kb on + strand at 2696.401 kb on - strand at 2696.403 kb on - strand at 2696.403 kb on - strand at 2696.448 kb on + strand at 2696.466 kb on + strand at 2696.471 kb on + strand at 2696.479 kb on - strand at 2696.484 kb on - strand at 2696.491 kb on + strand at 2696.491 kb on + strand at 2696.499 kb on - strand at 2696.518 kb on + strand, within CCNA_02548 at 2696.526 kb on - strand, within CCNA_02548 at 2696.526 kb on - strand, within CCNA_02548 at 2696.529 kb on + strand, within CCNA_02548 at 2696.540 kb on + strand, within CCNA_02548 at 2696.540 kb on + strand, within CCNA_02548 at 2696.540 kb on + strand, within CCNA_02548 at 2696.548 kb on - strand, within CCNA_02548 at 2696.575 kb on - strand, within CCNA_02548 at 2696.575 kb on - strand, within CCNA_02548 at 2696.596 kb on - strand, within CCNA_02548 at 2696.596 kb on - strand, within CCNA_02548 at 2696.598 kb on + strand, within CCNA_02548 at 2696.618 kb on - strand, within CCNA_02548 at 2696.628 kb on - strand, within CCNA_02548 at 2696.692 kb on + strand, within CCNA_02548 at 2696.700 kb on - strand, within CCNA_02548 at 2696.705 kb on - strand, within CCNA_02548 at 2696.758 kb on + strand, within CCNA_02548 at 2696.781 kb on - strand, within CCNA_02548 at 2696.804 kb on + strand, within CCNA_02548 at 2696.819 kb on + strand, within CCNA_02548 at 2696.828 kb on + strand, within CCNA_02548 at 2696.835 kb on + strand, within CCNA_02548 at 2696.836 kb on + strand, within CCNA_02548 at 2696.844 kb on - strand, within CCNA_02548 at 2696.859 kb on - strand, within CCNA_02548 at 2696.859 kb on - strand, within CCNA_02548 at 2696.859 kb on - strand, within CCNA_02548 at 2696.860 kb on - strand, within CCNA_02548 at 2696.871 kb on - strand, within CCNA_02548 at 2696.872 kb on + strand, within CCNA_02548 at 2696.881 kb on - strand, within CCNA_02548 at 2696.888 kb on + strand, within CCNA_02548 at 2696.891 kb on - strand, within CCNA_02548 at 2696.891 kb on - strand, within CCNA_02548 at 2696.891 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.901 kb on - strand, within CCNA_02548 at 2696.991 kb on + strand, within CCNA_02548 at 2697.007 kb on - strand, within CCNA_02548 at 2697.007 kb on - strand, within CCNA_02548 at 2697.030 kb on - strand at 2697.030 kb on - strand at 2697.151 kb on + strand at 2697.221 kb on + strand, within CCNA_02549 at 2697.244 kb on - strand, within CCNA_02549 at 2697.244 kb on - strand, within CCNA_02549 at 2697.267 kb on + strand, within CCNA_02549 at 2697.267 kb on + strand, within CCNA_02549 at 2697.267 kb on + strand, within CCNA_02549 at 2697.269 kb on - strand, within CCNA_02549 at 2697.303 kb on + strand, within CCNA_02549 at 2697.306 kb on - strand, within CCNA_02549
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,694,977 + CCNA_02546 0.29 -1.5 2,694,984 - CCNA_02546 0.30 +0.4 2,694,991 + CCNA_02546 0.30 -0.9 2,694,999 + CCNA_02546 0.31 -0.2 2,695,015 - CCNA_02546 0.32 +1.2 2,695,027 - CCNA_02546 0.33 -0.4 2,695,029 + CCNA_02546 0.33 -0.6 2,695,121 + CCNA_02546 0.40 +0.7 2,695,121 + CCNA_02546 0.40 -0.5 2,695,126 - CCNA_02546 0.40 +0.1 2,695,129 - CCNA_02546 0.40 +0.1 2,695,129 - CCNA_02546 0.40 -0.7 2,695,133 + CCNA_02546 0.41 -0.1 2,695,217 + CCNA_02546 0.47 -1.4 2,695,217 + CCNA_02546 0.47 -0.3 2,695,225 - CCNA_02546 0.47 -0.3 2,695,239 - CCNA_02546 0.48 +0.8 2,695,250 + CCNA_02546 0.49 -2.1 2,695,250 + CCNA_02546 0.49 +0.3 2,695,258 - CCNA_02546 0.50 +0.4 2,695,258 - CCNA_02546 0.50 +0.2 2,695,292 - CCNA_02546 0.52 +0.7 2,695,309 + CCNA_02546 0.53 +0.0 2,695,309 - CCNA_02546 0.53 +0.0 2,695,345 - CCNA_02546 0.56 +0.0 2,695,345 - CCNA_02546 0.56 +0.7 2,695,362 + CCNA_02546 0.57 +1.9 2,695,378 - CCNA_02546 0.58 -0.5 2,695,386 + CCNA_02546 0.59 +0.3 2,695,386 + CCNA_02546 0.59 +0.8 2,695,414 + CCNA_02546 0.61 +0.7 2,695,436 - CCNA_02546 0.63 +0.4 2,695,484 - CCNA_02546 0.66 +0.1 2,695,484 - CCNA_02546 0.66 -0.4 2,695,484 - CCNA_02546 0.66 +1.4 2,695,503 - CCNA_02546 0.68 +0.2 2,695,503 - CCNA_02546 0.68 +0.3 2,695,527 - CCNA_02546 0.69 +0.1 2,695,537 + CCNA_02546 0.70 -0.4 2,695,584 + CCNA_02546 0.74 -0.1 2,695,593 - CCNA_02546 0.74 +0.1 2,695,609 + CCNA_02546 0.75 -0.3 2,695,656 + CCNA_02546 0.79 +0.4 2,695,685 - CCNA_02546 0.81 +0.5 2,695,707 - CCNA_02546 0.83 +0.0 2,695,751 - CCNA_02546 0.86 +0.4 2,695,755 + CCNA_02546 0.86 -0.8 2,695,820 + +0.6 2,695,820 + -1.5 2,695,820 + -1.4 2,695,820 + -0.6 2,695,828 - +1.4 2,695,828 - +0.9 2,695,828 - +0.9 2,695,828 - +0.7 2,695,833 - +0.2 2,695,860 + -0.0 2,695,862 + +0.2 2,695,874 + -2.9 2,695,875 - +0.2 2,695,930 + -0.3 2,695,930 + -1.3 2,695,938 - +0.5 2,695,938 - +0.3 2,696,318 + -0.5 2,696,318 + -1.7 2,696,318 + +0.1 2,696,318 + -0.8 2,696,318 + -1.3 2,696,318 + +0.0 2,696,326 - -0.3 2,696,326 - +0.2 2,696,395 + -0.9 2,696,400 + +0.7 2,696,401 - +0.8 2,696,403 - -0.4 2,696,403 - +1.9 2,696,448 + -0.2 2,696,466 + +0.1 2,696,471 + -0.9 2,696,479 - -0.8 2,696,484 - -1.1 2,696,491 + -0.3 2,696,491 + +0.0 2,696,499 - -0.5 2,696,518 + CCNA_02548 0.12 +0.1 2,696,526 - CCNA_02548 0.13 -0.1 2,696,526 - CCNA_02548 0.13 +1.0 2,696,529 + CCNA_02548 0.14 +0.3 2,696,540 + CCNA_02548 0.15 +1.4 2,696,540 + CCNA_02548 0.15 +0.4 2,696,540 + CCNA_02548 0.15 +2.0 2,696,548 - CCNA_02548 0.17 -0.2 2,696,575 - CCNA_02548 0.21 -0.5 2,696,575 - CCNA_02548 0.21 -0.0 2,696,596 - CCNA_02548 0.24 -0.8 2,696,596 - CCNA_02548 0.24 -0.7 2,696,598 + CCNA_02548 0.24 -0.8 2,696,618 - CCNA_02548 0.27 +0.1 2,696,628 - CCNA_02548 0.29 -0.3 2,696,692 + CCNA_02548 0.39 -0.2 2,696,700 - CCNA_02548 0.40 -0.6 2,696,705 - CCNA_02548 0.41 +0.0 2,696,758 + CCNA_02548 0.49 +0.3 2,696,781 - CCNA_02548 0.53 -0.1 2,696,804 + CCNA_02548 0.56 -0.7 2,696,819 + CCNA_02548 0.58 +0.1 2,696,828 + CCNA_02548 0.60 +0.7 2,696,835 + CCNA_02548 0.61 -0.5 2,696,836 + CCNA_02548 0.61 +0.6 2,696,844 - CCNA_02548 0.62 -0.3 2,696,859 - CCNA_02548 0.65 -0.2 2,696,859 - CCNA_02548 0.65 -0.0 2,696,859 - CCNA_02548 0.65 +0.8 2,696,860 - CCNA_02548 0.65 +0.1 2,696,871 - CCNA_02548 0.67 -0.6 2,696,872 + CCNA_02548 0.67 +0.2 2,696,881 - CCNA_02548 0.68 -0.3 2,696,888 + CCNA_02548 0.69 -0.4 2,696,891 - CCNA_02548 0.70 +0.9 2,696,891 - CCNA_02548 0.70 -1.0 2,696,891 - CCNA_02548 0.70 -0.2 2,696,896 - CCNA_02548 0.70 -0.0 2,696,896 - CCNA_02548 0.70 -0.2 2,696,896 - CCNA_02548 0.70 -1.2 2,696,896 - CCNA_02548 0.70 +0.6 2,696,896 - CCNA_02548 0.70 +0.6 2,696,896 - CCNA_02548 0.70 -0.9 2,696,901 - CCNA_02548 0.71 +0.3 2,696,991 + CCNA_02548 0.85 +0.5 2,697,007 - CCNA_02548 0.88 -0.5 2,697,007 - CCNA_02548 0.88 +0.0 2,697,030 - -0.0 2,697,030 - +0.1 2,697,151 + -0.1 2,697,221 + CCNA_02549 0.15 -2.0 2,697,244 - CCNA_02549 0.18 +0.1 2,697,244 - CCNA_02549 0.18 +0.2 2,697,267 + CCNA_02549 0.21 -0.1 2,697,267 + CCNA_02549 0.21 -0.5 2,697,267 + CCNA_02549 0.21 +1.7 2,697,269 - CCNA_02549 0.21 -0.5 2,697,303 + CCNA_02549 0.25 -0.4 2,697,306 - CCNA_02549 0.25 +0.0
Or see this region's nucleotide sequence