Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02546

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02545 and CCNA_02546 are separated by 106 nucleotidesCCNA_02546 and CCNA_02547 overlap by 4 nucleotidesCCNA_02547 and CCNA_02548 are separated by 121 nucleotides CCNA_02545: CCNA_02545 - alkaline phosphatase, at 2,692,800 to 2,694,473 _02545 CCNA_02546: CCNA_02546 - GGDEF/response regulator protein PleD, at 2,694,580 to 2,695,944 _02546 CCNA_02547: CCNA_02547 - response regulator receiver protein DivK, at 2,695,941 to 2,696,318 _02547 CCNA_02548: CCNA_02548 - hypothetical protein, at 2,696,440 to 2,697,087 _02548 Position (kb) 2694 2695 2696Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2693.596 kb on + strand, within CCNA_02545at 2693.596 kb on + strand, within CCNA_02545at 2693.611 kb on + strand, within CCNA_02545at 2693.634 kb on + strand, within CCNA_02545at 2693.641 kb on + strand, within CCNA_02545at 2693.642 kb on - strand, within CCNA_02545at 2693.661 kb on + strand, within CCNA_02545at 2693.671 kb on + strand, within CCNA_02545at 2693.671 kb on + strand, within CCNA_02545at 2693.679 kb on - strand, within CCNA_02545at 2693.715 kb on - strand, within CCNA_02545at 2693.730 kb on + strand, within CCNA_02545at 2693.790 kb on - strand, within CCNA_02545at 2693.805 kb on + strand, within CCNA_02545at 2693.831 kb on + strand, within CCNA_02545at 2693.839 kb on - strand, within CCNA_02545at 2693.844 kb on - strand, within CCNA_02545at 2693.884 kb on + strand, within CCNA_02545at 2693.886 kb on + strand, within CCNA_02545at 2693.911 kb on - strand, within CCNA_02545at 2693.922 kb on + strand, within CCNA_02545at 2693.930 kb on - strand, within CCNA_02545at 2693.930 kb on - strand, within CCNA_02545at 2693.930 kb on - strand, within CCNA_02545at 2693.930 kb on - strand, within CCNA_02545at 2693.952 kb on - strand, within CCNA_02545at 2693.976 kb on - strand, within CCNA_02545at 2694.081 kb on + strand, within CCNA_02545at 2694.089 kb on + strand, within CCNA_02545at 2694.137 kb on + strand, within CCNA_02545at 2694.189 kb on - strand, within CCNA_02545at 2694.217 kb on + strand, within CCNA_02545at 2694.232 kb on + strand, within CCNA_02545at 2694.240 kb on - strand, within CCNA_02545at 2694.274 kb on - strand, within CCNA_02545at 2694.281 kb on + strand, within CCNA_02545at 2694.338 kb on + strandat 2694.338 kb on + strandat 2694.351 kb on - strandat 2694.351 kb on - strandat 2694.361 kb on + strandat 2694.363 kb on - strandat 2694.367 kb on + strandat 2694.367 kb on + strandat 2694.375 kb on - strandat 2694.375 kb on - strandat 2694.380 kb on - strandat 2694.407 kb on + strandat 2694.432 kb on + strandat 2694.440 kb on - strandat 2694.440 kb on - strandat 2694.557 kb on + strandat 2694.557 kb on + strandat 2694.565 kb on - strandat 2694.578 kb on + strandat 2694.619 kb on - strandat 2694.625 kb on - strandat 2694.627 kb on + strandat 2694.627 kb on + strandat 2694.652 kb on + strandat 2694.682 kb on - strandat 2694.740 kb on + strand, within CCNA_02546at 2694.750 kb on - strand, within CCNA_02546at 2694.777 kb on + strand, within CCNA_02546at 2694.790 kb on - strand, within CCNA_02546at 2694.790 kb on - strand, within CCNA_02546at 2694.812 kb on - strand, within CCNA_02546at 2694.866 kb on - strand, within CCNA_02546at 2694.874 kb on + strand, within CCNA_02546at 2694.883 kb on - strand, within CCNA_02546at 2694.917 kb on - strand, within CCNA_02546at 2694.977 kb on + strand, within CCNA_02546at 2694.984 kb on - strand, within CCNA_02546at 2694.991 kb on + strand, within CCNA_02546at 2694.999 kb on + strand, within CCNA_02546at 2695.015 kb on - strand, within CCNA_02546at 2695.027 kb on - strand, within CCNA_02546at 2695.029 kb on + strand, within CCNA_02546at 2695.121 kb on + strand, within CCNA_02546at 2695.121 kb on + strand, within CCNA_02546at 2695.126 kb on - strand, within CCNA_02546at 2695.129 kb on - strand, within CCNA_02546at 2695.129 kb on - strand, within CCNA_02546at 2695.133 kb on + strand, within CCNA_02546at 2695.217 kb on + strand, within CCNA_02546at 2695.217 kb on + strand, within CCNA_02546at 2695.225 kb on - strand, within CCNA_02546at 2695.239 kb on - strand, within CCNA_02546at 2695.250 kb on + strand, within CCNA_02546at 2695.250 kb on + strand, within CCNA_02546at 2695.258 kb on - strand, within CCNA_02546at 2695.258 kb on - strand, within CCNA_02546at 2695.292 kb on - strand, within CCNA_02546at 2695.309 kb on + strand, within CCNA_02546at 2695.309 kb on - strand, within CCNA_02546at 2695.345 kb on - strand, within CCNA_02546at 2695.345 kb on - strand, within CCNA_02546at 2695.362 kb on + strand, within CCNA_02546at 2695.378 kb on - strand, within CCNA_02546at 2695.386 kb on + strand, within CCNA_02546at 2695.386 kb on + strand, within CCNA_02546at 2695.414 kb on + strand, within CCNA_02546at 2695.436 kb on - strand, within CCNA_02546at 2695.484 kb on - strand, within CCNA_02546at 2695.484 kb on - strand, within CCNA_02546at 2695.484 kb on - strand, within CCNA_02546at 2695.503 kb on - strand, within CCNA_02546at 2695.503 kb on - strand, within CCNA_02546at 2695.527 kb on - strand, within CCNA_02546at 2695.537 kb on + strand, within CCNA_02546at 2695.584 kb on + strand, within CCNA_02546at 2695.593 kb on - strand, within CCNA_02546at 2695.609 kb on + strand, within CCNA_02546at 2695.656 kb on + strand, within CCNA_02546at 2695.685 kb on - strand, within CCNA_02546at 2695.707 kb on - strand, within CCNA_02546at 2695.751 kb on - strand, within CCNA_02546at 2695.755 kb on + strand, within CCNA_02546at 2695.820 kb on + strandat 2695.820 kb on + strandat 2695.820 kb on + strandat 2695.820 kb on + strandat 2695.828 kb on - strandat 2695.828 kb on - strandat 2695.828 kb on - strandat 2695.828 kb on - strandat 2695.833 kb on - strandat 2695.860 kb on + strandat 2695.862 kb on + strandat 2695.874 kb on + strandat 2695.875 kb on - strandat 2695.930 kb on + strandat 2695.930 kb on + strandat 2695.938 kb on - strandat 2695.938 kb on - strandat 2696.318 kb on + strandat 2696.318 kb on + strandat 2696.318 kb on + strandat 2696.318 kb on + strandat 2696.318 kb on + strandat 2696.318 kb on + strandat 2696.326 kb on - strandat 2696.326 kb on - strandat 2696.395 kb on + strandat 2696.400 kb on + strandat 2696.401 kb on - strandat 2696.403 kb on - strandat 2696.403 kb on - strandat 2696.448 kb on + strandat 2696.466 kb on + strandat 2696.471 kb on + strandat 2696.479 kb on - strandat 2696.484 kb on - strandat 2696.491 kb on + strandat 2696.491 kb on + strandat 2696.499 kb on - strandat 2696.518 kb on + strand, within CCNA_02548at 2696.526 kb on - strand, within CCNA_02548at 2696.526 kb on - strand, within CCNA_02548at 2696.529 kb on + strand, within CCNA_02548at 2696.540 kb on + strand, within CCNA_02548at 2696.540 kb on + strand, within CCNA_02548at 2696.540 kb on + strand, within CCNA_02548at 2696.548 kb on - strand, within CCNA_02548at 2696.575 kb on - strand, within CCNA_02548at 2696.575 kb on - strand, within CCNA_02548at 2696.596 kb on - strand, within CCNA_02548at 2696.596 kb on - strand, within CCNA_02548at 2696.598 kb on + strand, within CCNA_02548at 2696.618 kb on - strand, within CCNA_02548at 2696.628 kb on - strand, within CCNA_02548at 2696.692 kb on + strand, within CCNA_02548at 2696.700 kb on - strand, within CCNA_02548at 2696.705 kb on - strand, within CCNA_02548at 2696.758 kb on + strand, within CCNA_02548at 2696.781 kb on - strand, within CCNA_02548at 2696.804 kb on + strand, within CCNA_02548at 2696.819 kb on + strand, within CCNA_02548at 2696.828 kb on + strand, within CCNA_02548at 2696.835 kb on + strand, within CCNA_02548at 2696.836 kb on + strand, within CCNA_02548at 2696.844 kb on - strand, within CCNA_02548at 2696.859 kb on - strand, within CCNA_02548at 2696.859 kb on - strand, within CCNA_02548at 2696.859 kb on - strand, within CCNA_02548at 2696.860 kb on - strand, within CCNA_02548at 2696.871 kb on - strand, within CCNA_02548at 2696.872 kb on + strand, within CCNA_02548at 2696.881 kb on - strand, within CCNA_02548at 2696.888 kb on + strand, within CCNA_02548at 2696.891 kb on - strand, within CCNA_02548at 2696.891 kb on - strand, within CCNA_02548at 2696.891 kb on - strand, within CCNA_02548at 2696.896 kb on - strand, within CCNA_02548at 2696.896 kb on - strand, within CCNA_02548at 2696.896 kb on - strand, within CCNA_02548at 2696.896 kb on - strand, within CCNA_02548at 2696.896 kb on - strand, within CCNA_02548at 2696.896 kb on - strand, within CCNA_02548at 2696.901 kb on - strand, within CCNA_02548

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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2,693,596 + CCNA_02545 0.48 +0.2
2,693,596 + CCNA_02545 0.48 +0.4
2,693,611 + CCNA_02545 0.48 -0.1
2,693,634 + CCNA_02545 0.50 +0.3
2,693,641 + CCNA_02545 0.50 +1.7
2,693,642 - CCNA_02545 0.50 +0.2
2,693,661 + CCNA_02545 0.51 -0.6
2,693,671 + CCNA_02545 0.52 -0.4
2,693,671 + CCNA_02545 0.52 -1.1
2,693,679 - CCNA_02545 0.53 -0.3
2,693,715 - CCNA_02545 0.55 +0.7
2,693,730 + CCNA_02545 0.56 -0.3
2,693,790 - CCNA_02545 0.59 +0.3
2,693,805 + CCNA_02545 0.60 +1.0
2,693,831 + CCNA_02545 0.62 -1.1
2,693,839 - CCNA_02545 0.62 +0.7
2,693,844 - CCNA_02545 0.62 +0.6
2,693,884 + CCNA_02545 0.65 +0.2
2,693,886 + CCNA_02545 0.65 -0.5
2,693,911 - CCNA_02545 0.66 -0.2
2,693,922 + CCNA_02545 0.67 -0.4
2,693,930 - CCNA_02545 0.68 +0.1
2,693,930 - CCNA_02545 0.68 -0.8
2,693,930 - CCNA_02545 0.68 +1.5
2,693,930 - CCNA_02545 0.68 +0.1
2,693,952 - CCNA_02545 0.69 +0.3
2,693,976 - CCNA_02545 0.70 +0.4
2,694,081 + CCNA_02545 0.77 -0.7
2,694,089 + CCNA_02545 0.77 -0.4
2,694,137 + CCNA_02545 0.80 -0.2
2,694,189 - CCNA_02545 0.83 +0.1
2,694,217 + CCNA_02545 0.85 +0.3
2,694,232 + CCNA_02545 0.86 -0.7
2,694,240 - CCNA_02545 0.86 +0.1
2,694,274 - CCNA_02545 0.88 -0.3
2,694,281 + CCNA_02545 0.88 -0.5
2,694,338 + -0.0
2,694,338 + -0.1
2,694,351 - +0.8
2,694,351 - +0.4
2,694,361 + -0.6
2,694,363 - +0.9
2,694,367 + -0.5
2,694,367 + -0.3
2,694,375 - +0.5
2,694,375 - +0.5
2,694,380 - +0.5
2,694,407 + -0.9
2,694,432 + +2.2
2,694,440 - +1.0
2,694,440 - +0.0
2,694,557 + -0.1
2,694,557 + -1.6
2,694,565 - +0.3
2,694,578 + +0.9
2,694,619 - -0.2
2,694,625 - +0.7
2,694,627 + +0.3
2,694,627 + -1.2
2,694,652 + +0.9
2,694,682 - +1.1
2,694,740 + CCNA_02546 0.12 -0.5
2,694,750 - CCNA_02546 0.12 +1.7
2,694,777 + CCNA_02546 0.14 -0.6
2,694,790 - CCNA_02546 0.15 +0.8
2,694,790 - CCNA_02546 0.15 +0.2
2,694,812 - CCNA_02546 0.17 +1.5
2,694,866 - CCNA_02546 0.21 +0.1
2,694,874 + CCNA_02546 0.22 +0.1
2,694,883 - CCNA_02546 0.22 +0.8
2,694,917 - CCNA_02546 0.25 +0.7
2,694,977 + CCNA_02546 0.29 -1.5
2,694,984 - CCNA_02546 0.30 +0.4
2,694,991 + CCNA_02546 0.30 -0.9
2,694,999 + CCNA_02546 0.31 -0.2
2,695,015 - CCNA_02546 0.32 +1.2
2,695,027 - CCNA_02546 0.33 -0.4
2,695,029 + CCNA_02546 0.33 -0.6
2,695,121 + CCNA_02546 0.40 +0.7
2,695,121 + CCNA_02546 0.40 -0.5
2,695,126 - CCNA_02546 0.40 +0.1
2,695,129 - CCNA_02546 0.40 +0.1
2,695,129 - CCNA_02546 0.40 -0.7
2,695,133 + CCNA_02546 0.41 -0.1
2,695,217 + CCNA_02546 0.47 -1.4
2,695,217 + CCNA_02546 0.47 -0.3
2,695,225 - CCNA_02546 0.47 -0.3
2,695,239 - CCNA_02546 0.48 +0.8
2,695,250 + CCNA_02546 0.49 -2.1
2,695,250 + CCNA_02546 0.49 +0.3
2,695,258 - CCNA_02546 0.50 +0.4
2,695,258 - CCNA_02546 0.50 +0.2
2,695,292 - CCNA_02546 0.52 +0.7
2,695,309 + CCNA_02546 0.53 +0.0
2,695,309 - CCNA_02546 0.53 +0.0
2,695,345 - CCNA_02546 0.56 +0.0
2,695,345 - CCNA_02546 0.56 +0.7
2,695,362 + CCNA_02546 0.57 +1.9
2,695,378 - CCNA_02546 0.58 -0.5
2,695,386 + CCNA_02546 0.59 +0.3
2,695,386 + CCNA_02546 0.59 +0.8
2,695,414 + CCNA_02546 0.61 +0.7
2,695,436 - CCNA_02546 0.63 +0.4
2,695,484 - CCNA_02546 0.66 +0.1
2,695,484 - CCNA_02546 0.66 -0.4
2,695,484 - CCNA_02546 0.66 +1.4
2,695,503 - CCNA_02546 0.68 +0.2
2,695,503 - CCNA_02546 0.68 +0.3
2,695,527 - CCNA_02546 0.69 +0.1
2,695,537 + CCNA_02546 0.70 -0.4
2,695,584 + CCNA_02546 0.74 -0.1
2,695,593 - CCNA_02546 0.74 +0.1
2,695,609 + CCNA_02546 0.75 -0.3
2,695,656 + CCNA_02546 0.79 +0.4
2,695,685 - CCNA_02546 0.81 +0.5
2,695,707 - CCNA_02546 0.83 +0.0
2,695,751 - CCNA_02546 0.86 +0.4
2,695,755 + CCNA_02546 0.86 -0.8
2,695,820 + +0.6
2,695,820 + -1.5
2,695,820 + -1.4
2,695,820 + -0.6
2,695,828 - +1.4
2,695,828 - +0.9
2,695,828 - +0.9
2,695,828 - +0.7
2,695,833 - +0.2
2,695,860 + -0.0
2,695,862 + +0.2
2,695,874 + -2.9
2,695,875 - +0.2
2,695,930 + -0.3
2,695,930 + -1.3
2,695,938 - +0.5
2,695,938 - +0.3
2,696,318 + -0.5
2,696,318 + -1.7
2,696,318 + +0.1
2,696,318 + -0.8
2,696,318 + -1.3
2,696,318 + +0.0
2,696,326 - -0.3
2,696,326 - +0.2
2,696,395 + -0.9
2,696,400 + +0.7
2,696,401 - +0.8
2,696,403 - -0.4
2,696,403 - +1.9
2,696,448 + -0.2
2,696,466 + +0.1
2,696,471 + -0.9
2,696,479 - -0.8
2,696,484 - -1.1
2,696,491 + -0.3
2,696,491 + +0.0
2,696,499 - -0.5
2,696,518 + CCNA_02548 0.12 +0.1
2,696,526 - CCNA_02548 0.13 -0.1
2,696,526 - CCNA_02548 0.13 +1.0
2,696,529 + CCNA_02548 0.14 +0.3
2,696,540 + CCNA_02548 0.15 +1.4
2,696,540 + CCNA_02548 0.15 +0.4
2,696,540 + CCNA_02548 0.15 +2.0
2,696,548 - CCNA_02548 0.17 -0.2
2,696,575 - CCNA_02548 0.21 -0.5
2,696,575 - CCNA_02548 0.21 -0.0
2,696,596 - CCNA_02548 0.24 -0.8
2,696,596 - CCNA_02548 0.24 -0.7
2,696,598 + CCNA_02548 0.24 -0.8
2,696,618 - CCNA_02548 0.27 +0.1
2,696,628 - CCNA_02548 0.29 -0.3
2,696,692 + CCNA_02548 0.39 -0.2
2,696,700 - CCNA_02548 0.40 -0.6
2,696,705 - CCNA_02548 0.41 +0.0
2,696,758 + CCNA_02548 0.49 +0.3
2,696,781 - CCNA_02548 0.53 -0.1
2,696,804 + CCNA_02548 0.56 -0.7
2,696,819 + CCNA_02548 0.58 +0.1
2,696,828 + CCNA_02548 0.60 +0.7
2,696,835 + CCNA_02548 0.61 -0.5
2,696,836 + CCNA_02548 0.61 +0.6
2,696,844 - CCNA_02548 0.62 -0.3
2,696,859 - CCNA_02548 0.65 -0.2
2,696,859 - CCNA_02548 0.65 -0.0
2,696,859 - CCNA_02548 0.65 +0.8
2,696,860 - CCNA_02548 0.65 +0.1
2,696,871 - CCNA_02548 0.67 -0.6
2,696,872 + CCNA_02548 0.67 +0.2
2,696,881 - CCNA_02548 0.68 -0.3
2,696,888 + CCNA_02548 0.69 -0.4
2,696,891 - CCNA_02548 0.70 +0.9
2,696,891 - CCNA_02548 0.70 -1.0
2,696,891 - CCNA_02548 0.70 -0.2
2,696,896 - CCNA_02548 0.70 -0.0
2,696,896 - CCNA_02548 0.70 -0.2
2,696,896 - CCNA_02548 0.70 -1.2
2,696,896 - CCNA_02548 0.70 +0.6
2,696,896 - CCNA_02548 0.70 +0.6
2,696,896 - CCNA_02548 0.70 -0.9
2,696,901 - CCNA_02548 0.71 +0.3

Or see this region's nucleotide sequence