Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02545 and CCNA_02546 are separated by 106 nucleotides CCNA_02546 and CCNA_02547 overlap by 4 nucleotides CCNA_02547 and CCNA_02548 are separated by 121 nucleotides
CCNA_02545: CCNA_02545 - alkaline phosphatase, at 2,692,800 to 2,694,473
_02545
CCNA_02546: CCNA_02546 - GGDEF/response regulator protein PleD, at 2,694,580 to 2,695,944
_02546
CCNA_02547: CCNA_02547 - response regulator receiver protein DivK, at 2,695,941 to 2,696,318
_02547
CCNA_02548: CCNA_02548 - hypothetical protein, at 2,696,440 to 2,697,087
_02548
Position (kb)
2694
2695
2696 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2693.596 kb on + strand, within CCNA_02545 at 2693.596 kb on + strand, within CCNA_02545 at 2693.611 kb on + strand, within CCNA_02545 at 2693.634 kb on + strand, within CCNA_02545 at 2693.641 kb on + strand, within CCNA_02545 at 2693.642 kb on - strand, within CCNA_02545 at 2693.661 kb on + strand, within CCNA_02545 at 2693.671 kb on + strand, within CCNA_02545 at 2693.671 kb on + strand, within CCNA_02545 at 2693.679 kb on - strand, within CCNA_02545 at 2693.715 kb on - strand, within CCNA_02545 at 2693.730 kb on + strand, within CCNA_02545 at 2693.790 kb on - strand, within CCNA_02545 at 2693.805 kb on + strand, within CCNA_02545 at 2693.831 kb on + strand, within CCNA_02545 at 2693.839 kb on - strand, within CCNA_02545 at 2693.844 kb on - strand, within CCNA_02545 at 2693.884 kb on + strand, within CCNA_02545 at 2693.886 kb on + strand, within CCNA_02545 at 2693.911 kb on - strand, within CCNA_02545 at 2693.922 kb on + strand, within CCNA_02545 at 2693.930 kb on - strand, within CCNA_02545 at 2693.930 kb on - strand, within CCNA_02545 at 2693.930 kb on - strand, within CCNA_02545 at 2693.930 kb on - strand, within CCNA_02545 at 2693.952 kb on - strand, within CCNA_02545 at 2693.976 kb on - strand, within CCNA_02545 at 2694.081 kb on + strand, within CCNA_02545 at 2694.089 kb on + strand, within CCNA_02545 at 2694.137 kb on + strand, within CCNA_02545 at 2694.189 kb on - strand, within CCNA_02545 at 2694.217 kb on + strand, within CCNA_02545 at 2694.232 kb on + strand, within CCNA_02545 at 2694.240 kb on - strand, within CCNA_02545 at 2694.274 kb on - strand, within CCNA_02545 at 2694.281 kb on + strand, within CCNA_02545 at 2694.338 kb on + strand at 2694.338 kb on + strand at 2694.351 kb on - strand at 2694.351 kb on - strand at 2694.361 kb on + strand at 2694.363 kb on - strand at 2694.367 kb on + strand at 2694.367 kb on + strand at 2694.375 kb on - strand at 2694.375 kb on - strand at 2694.380 kb on - strand at 2694.407 kb on + strand at 2694.432 kb on + strand at 2694.440 kb on - strand at 2694.440 kb on - strand at 2694.557 kb on + strand at 2694.557 kb on + strand at 2694.565 kb on - strand at 2694.578 kb on + strand at 2694.619 kb on - strand at 2694.625 kb on - strand at 2694.627 kb on + strand at 2694.627 kb on + strand at 2694.652 kb on + strand at 2694.682 kb on - strand at 2694.740 kb on + strand, within CCNA_02546 at 2694.750 kb on - strand, within CCNA_02546 at 2694.777 kb on + strand, within CCNA_02546 at 2694.790 kb on - strand, within CCNA_02546 at 2694.790 kb on - strand, within CCNA_02546 at 2694.812 kb on - strand, within CCNA_02546 at 2694.866 kb on - strand, within CCNA_02546 at 2694.874 kb on + strand, within CCNA_02546 at 2694.883 kb on - strand, within CCNA_02546 at 2694.917 kb on - strand, within CCNA_02546 at 2694.977 kb on + strand, within CCNA_02546 at 2694.984 kb on - strand, within CCNA_02546 at 2694.991 kb on + strand, within CCNA_02546 at 2694.999 kb on + strand, within CCNA_02546 at 2695.015 kb on - strand, within CCNA_02546 at 2695.027 kb on - strand, within CCNA_02546 at 2695.029 kb on + strand, within CCNA_02546 at 2695.121 kb on + strand, within CCNA_02546 at 2695.121 kb on + strand, within CCNA_02546 at 2695.126 kb on - strand, within CCNA_02546 at 2695.129 kb on - strand, within CCNA_02546 at 2695.129 kb on - strand, within CCNA_02546 at 2695.133 kb on + strand, within CCNA_02546 at 2695.217 kb on + strand, within CCNA_02546 at 2695.217 kb on + strand, within CCNA_02546 at 2695.225 kb on - strand, within CCNA_02546 at 2695.239 kb on - strand, within CCNA_02546 at 2695.250 kb on + strand, within CCNA_02546 at 2695.250 kb on + strand, within CCNA_02546 at 2695.258 kb on - strand, within CCNA_02546 at 2695.258 kb on - strand, within CCNA_02546 at 2695.292 kb on - strand, within CCNA_02546 at 2695.309 kb on + strand, within CCNA_02546 at 2695.309 kb on - strand, within CCNA_02546 at 2695.345 kb on - strand, within CCNA_02546 at 2695.345 kb on - strand, within CCNA_02546 at 2695.362 kb on + strand, within CCNA_02546 at 2695.378 kb on - strand, within CCNA_02546 at 2695.386 kb on + strand, within CCNA_02546 at 2695.386 kb on + strand, within CCNA_02546 at 2695.414 kb on + strand, within CCNA_02546 at 2695.436 kb on - strand, within CCNA_02546 at 2695.484 kb on - strand, within CCNA_02546 at 2695.484 kb on - strand, within CCNA_02546 at 2695.484 kb on - strand, within CCNA_02546 at 2695.503 kb on - strand, within CCNA_02546 at 2695.503 kb on - strand, within CCNA_02546 at 2695.527 kb on - strand, within CCNA_02546 at 2695.537 kb on + strand, within CCNA_02546 at 2695.584 kb on + strand, within CCNA_02546 at 2695.593 kb on - strand, within CCNA_02546 at 2695.609 kb on + strand, within CCNA_02546 at 2695.656 kb on + strand, within CCNA_02546 at 2695.685 kb on - strand, within CCNA_02546 at 2695.707 kb on - strand, within CCNA_02546 at 2695.751 kb on - strand, within CCNA_02546 at 2695.755 kb on + strand, within CCNA_02546 at 2695.820 kb on + strand at 2695.820 kb on + strand at 2695.820 kb on + strand at 2695.820 kb on + strand at 2695.828 kb on - strand at 2695.828 kb on - strand at 2695.828 kb on - strand at 2695.828 kb on - strand at 2695.833 kb on - strand at 2695.860 kb on + strand at 2695.862 kb on + strand at 2695.874 kb on + strand at 2695.875 kb on - strand at 2695.930 kb on + strand at 2695.930 kb on + strand at 2695.938 kb on - strand at 2695.938 kb on - strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.326 kb on - strand at 2696.326 kb on - strand at 2696.395 kb on + strand at 2696.400 kb on + strand at 2696.401 kb on - strand at 2696.403 kb on - strand at 2696.403 kb on - strand at 2696.448 kb on + strand at 2696.466 kb on + strand at 2696.471 kb on + strand at 2696.479 kb on - strand at 2696.484 kb on - strand at 2696.491 kb on + strand at 2696.491 kb on + strand at 2696.499 kb on - strand at 2696.518 kb on + strand, within CCNA_02548 at 2696.526 kb on - strand, within CCNA_02548 at 2696.526 kb on - strand, within CCNA_02548 at 2696.529 kb on + strand, within CCNA_02548 at 2696.540 kb on + strand, within CCNA_02548 at 2696.540 kb on + strand, within CCNA_02548 at 2696.540 kb on + strand, within CCNA_02548 at 2696.548 kb on - strand, within CCNA_02548 at 2696.575 kb on - strand, within CCNA_02548 at 2696.575 kb on - strand, within CCNA_02548 at 2696.596 kb on - strand, within CCNA_02548 at 2696.596 kb on - strand, within CCNA_02548 at 2696.598 kb on + strand, within CCNA_02548 at 2696.618 kb on - strand, within CCNA_02548 at 2696.628 kb on - strand, within CCNA_02548 at 2696.692 kb on + strand, within CCNA_02548 at 2696.700 kb on - strand, within CCNA_02548 at 2696.705 kb on - strand, within CCNA_02548 at 2696.758 kb on + strand, within CCNA_02548 at 2696.781 kb on - strand, within CCNA_02548 at 2696.804 kb on + strand, within CCNA_02548 at 2696.819 kb on + strand, within CCNA_02548 at 2696.828 kb on + strand, within CCNA_02548 at 2696.835 kb on + strand, within CCNA_02548 at 2696.836 kb on + strand, within CCNA_02548 at 2696.844 kb on - strand, within CCNA_02548 at 2696.859 kb on - strand, within CCNA_02548 at 2696.859 kb on - strand, within CCNA_02548 at 2696.859 kb on - strand, within CCNA_02548 at 2696.860 kb on - strand, within CCNA_02548 at 2696.871 kb on - strand, within CCNA_02548 at 2696.872 kb on + strand, within CCNA_02548 at 2696.881 kb on - strand, within CCNA_02548 at 2696.888 kb on + strand, within CCNA_02548 at 2696.891 kb on - strand, within CCNA_02548 at 2696.891 kb on - strand, within CCNA_02548 at 2696.891 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.901 kb on - strand, within CCNA_02548
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,693,596 + CCNA_02545 0.48 +0.2 2,693,596 + CCNA_02545 0.48 +0.4 2,693,611 + CCNA_02545 0.48 -0.1 2,693,634 + CCNA_02545 0.50 +0.3 2,693,641 + CCNA_02545 0.50 +1.7 2,693,642 - CCNA_02545 0.50 +0.2 2,693,661 + CCNA_02545 0.51 -0.6 2,693,671 + CCNA_02545 0.52 -0.4 2,693,671 + CCNA_02545 0.52 -1.1 2,693,679 - CCNA_02545 0.53 -0.3 2,693,715 - CCNA_02545 0.55 +0.7 2,693,730 + CCNA_02545 0.56 -0.3 2,693,790 - CCNA_02545 0.59 +0.3 2,693,805 + CCNA_02545 0.60 +1.0 2,693,831 + CCNA_02545 0.62 -1.1 2,693,839 - CCNA_02545 0.62 +0.7 2,693,844 - CCNA_02545 0.62 +0.6 2,693,884 + CCNA_02545 0.65 +0.2 2,693,886 + CCNA_02545 0.65 -0.5 2,693,911 - CCNA_02545 0.66 -0.2 2,693,922 + CCNA_02545 0.67 -0.4 2,693,930 - CCNA_02545 0.68 +0.1 2,693,930 - CCNA_02545 0.68 -0.8 2,693,930 - CCNA_02545 0.68 +1.5 2,693,930 - CCNA_02545 0.68 +0.1 2,693,952 - CCNA_02545 0.69 +0.3 2,693,976 - CCNA_02545 0.70 +0.4 2,694,081 + CCNA_02545 0.77 -0.7 2,694,089 + CCNA_02545 0.77 -0.4 2,694,137 + CCNA_02545 0.80 -0.2 2,694,189 - CCNA_02545 0.83 +0.1 2,694,217 + CCNA_02545 0.85 +0.3 2,694,232 + CCNA_02545 0.86 -0.7 2,694,240 - CCNA_02545 0.86 +0.1 2,694,274 - CCNA_02545 0.88 -0.3 2,694,281 + CCNA_02545 0.88 -0.5 2,694,338 + -0.0 2,694,338 + -0.1 2,694,351 - +0.8 2,694,351 - +0.4 2,694,361 + -0.6 2,694,363 - +0.9 2,694,367 + -0.5 2,694,367 + -0.3 2,694,375 - +0.5 2,694,375 - +0.5 2,694,380 - +0.5 2,694,407 + -0.9 2,694,432 + +2.2 2,694,440 - +1.0 2,694,440 - +0.0 2,694,557 + -0.1 2,694,557 + -1.6 2,694,565 - +0.3 2,694,578 + +0.9 2,694,619 - -0.2 2,694,625 - +0.7 2,694,627 + +0.3 2,694,627 + -1.2 2,694,652 + +0.9 2,694,682 - +1.1 2,694,740 + CCNA_02546 0.12 -0.5 2,694,750 - CCNA_02546 0.12 +1.7 2,694,777 + CCNA_02546 0.14 -0.6 2,694,790 - CCNA_02546 0.15 +0.8 2,694,790 - CCNA_02546 0.15 +0.2 2,694,812 - CCNA_02546 0.17 +1.5 2,694,866 - CCNA_02546 0.21 +0.1 2,694,874 + CCNA_02546 0.22 +0.1 2,694,883 - CCNA_02546 0.22 +0.8 2,694,917 - CCNA_02546 0.25 +0.7 2,694,977 + CCNA_02546 0.29 -1.5 2,694,984 - CCNA_02546 0.30 +0.4 2,694,991 + CCNA_02546 0.30 -0.9 2,694,999 + CCNA_02546 0.31 -0.2 2,695,015 - CCNA_02546 0.32 +1.2 2,695,027 - CCNA_02546 0.33 -0.4 2,695,029 + CCNA_02546 0.33 -0.6 2,695,121 + CCNA_02546 0.40 +0.7 2,695,121 + CCNA_02546 0.40 -0.5 2,695,126 - CCNA_02546 0.40 +0.1 2,695,129 - CCNA_02546 0.40 +0.1 2,695,129 - CCNA_02546 0.40 -0.7 2,695,133 + CCNA_02546 0.41 -0.1 2,695,217 + CCNA_02546 0.47 -1.4 2,695,217 + CCNA_02546 0.47 -0.3 2,695,225 - CCNA_02546 0.47 -0.3 2,695,239 - CCNA_02546 0.48 +0.8 2,695,250 + CCNA_02546 0.49 -2.1 2,695,250 + CCNA_02546 0.49 +0.3 2,695,258 - CCNA_02546 0.50 +0.4 2,695,258 - CCNA_02546 0.50 +0.2 2,695,292 - CCNA_02546 0.52 +0.7 2,695,309 + CCNA_02546 0.53 +0.0 2,695,309 - CCNA_02546 0.53 +0.0 2,695,345 - CCNA_02546 0.56 +0.0 2,695,345 - CCNA_02546 0.56 +0.7 2,695,362 + CCNA_02546 0.57 +1.9 2,695,378 - CCNA_02546 0.58 -0.5 2,695,386 + CCNA_02546 0.59 +0.3 2,695,386 + CCNA_02546 0.59 +0.8 2,695,414 + CCNA_02546 0.61 +0.7 2,695,436 - CCNA_02546 0.63 +0.4 2,695,484 - CCNA_02546 0.66 +0.1 2,695,484 - CCNA_02546 0.66 -0.4 2,695,484 - CCNA_02546 0.66 +1.4 2,695,503 - CCNA_02546 0.68 +0.2 2,695,503 - CCNA_02546 0.68 +0.3 2,695,527 - CCNA_02546 0.69 +0.1 2,695,537 + CCNA_02546 0.70 -0.4 2,695,584 + CCNA_02546 0.74 -0.1 2,695,593 - CCNA_02546 0.74 +0.1 2,695,609 + CCNA_02546 0.75 -0.3 2,695,656 + CCNA_02546 0.79 +0.4 2,695,685 - CCNA_02546 0.81 +0.5 2,695,707 - CCNA_02546 0.83 +0.0 2,695,751 - CCNA_02546 0.86 +0.4 2,695,755 + CCNA_02546 0.86 -0.8 2,695,820 + +0.6 2,695,820 + -1.5 2,695,820 + -1.4 2,695,820 + -0.6 2,695,828 - +1.4 2,695,828 - +0.9 2,695,828 - +0.9 2,695,828 - +0.7 2,695,833 - +0.2 2,695,860 + -0.0 2,695,862 + +0.2 2,695,874 + -2.9 2,695,875 - +0.2 2,695,930 + -0.3 2,695,930 + -1.3 2,695,938 - +0.5 2,695,938 - +0.3 2,696,318 + -0.5 2,696,318 + -1.7 2,696,318 + +0.1 2,696,318 + -0.8 2,696,318 + -1.3 2,696,318 + +0.0 2,696,326 - -0.3 2,696,326 - +0.2 2,696,395 + -0.9 2,696,400 + +0.7 2,696,401 - +0.8 2,696,403 - -0.4 2,696,403 - +1.9 2,696,448 + -0.2 2,696,466 + +0.1 2,696,471 + -0.9 2,696,479 - -0.8 2,696,484 - -1.1 2,696,491 + -0.3 2,696,491 + +0.0 2,696,499 - -0.5 2,696,518 + CCNA_02548 0.12 +0.1 2,696,526 - CCNA_02548 0.13 -0.1 2,696,526 - CCNA_02548 0.13 +1.0 2,696,529 + CCNA_02548 0.14 +0.3 2,696,540 + CCNA_02548 0.15 +1.4 2,696,540 + CCNA_02548 0.15 +0.4 2,696,540 + CCNA_02548 0.15 +2.0 2,696,548 - CCNA_02548 0.17 -0.2 2,696,575 - CCNA_02548 0.21 -0.5 2,696,575 - CCNA_02548 0.21 -0.0 2,696,596 - CCNA_02548 0.24 -0.8 2,696,596 - CCNA_02548 0.24 -0.7 2,696,598 + CCNA_02548 0.24 -0.8 2,696,618 - CCNA_02548 0.27 +0.1 2,696,628 - CCNA_02548 0.29 -0.3 2,696,692 + CCNA_02548 0.39 -0.2 2,696,700 - CCNA_02548 0.40 -0.6 2,696,705 - CCNA_02548 0.41 +0.0 2,696,758 + CCNA_02548 0.49 +0.3 2,696,781 - CCNA_02548 0.53 -0.1 2,696,804 + CCNA_02548 0.56 -0.7 2,696,819 + CCNA_02548 0.58 +0.1 2,696,828 + CCNA_02548 0.60 +0.7 2,696,835 + CCNA_02548 0.61 -0.5 2,696,836 + CCNA_02548 0.61 +0.6 2,696,844 - CCNA_02548 0.62 -0.3 2,696,859 - CCNA_02548 0.65 -0.2 2,696,859 - CCNA_02548 0.65 -0.0 2,696,859 - CCNA_02548 0.65 +0.8 2,696,860 - CCNA_02548 0.65 +0.1 2,696,871 - CCNA_02548 0.67 -0.6 2,696,872 + CCNA_02548 0.67 +0.2 2,696,881 - CCNA_02548 0.68 -0.3 2,696,888 + CCNA_02548 0.69 -0.4 2,696,891 - CCNA_02548 0.70 +0.9 2,696,891 - CCNA_02548 0.70 -1.0 2,696,891 - CCNA_02548 0.70 -0.2 2,696,896 - CCNA_02548 0.70 -0.0 2,696,896 - CCNA_02548 0.70 -0.2 2,696,896 - CCNA_02548 0.70 -1.2 2,696,896 - CCNA_02548 0.70 +0.6 2,696,896 - CCNA_02548 0.70 +0.6 2,696,896 - CCNA_02548 0.70 -0.9 2,696,901 - CCNA_02548 0.71 +0.3
Or see this region's nucleotide sequence