Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02505 and CCNA_02506 are separated by 360 nucleotides CCNA_02506 and CCNA_R0062 are separated by 203 nucleotides CCNA_R0062 and CCNA_02507 are separated by 140 nucleotides CCNA_02507 and CCNA_02508 are separated by 187 nucleotides
CCNA_02505: CCNA_02505 - type IV secretory pathway, VirB11 ATPase, at 2,654,745 to 2,655,713
_02505
CCNA_02506: CCNA_02506 - transposase/integrase-related peptide, at 2,656,074 to 2,656,214
_02506
CCNA_R0062: CCNA_R0062 - tRNA-Ser, at 2,656,418 to 2,656,508
_R0062
CCNA_02507: CCNA_02507 - polyisoprenylphosphate hexose-1-phosphotransferase hfsE, at 2,656,649 to 2,658,154
_02507
CCNA_02508: CCNA_02508 - oligosaccharide translocase/flippase hfsF, at 2,658,342 to 2,659,604
_02508
Position (kb)
2656
2657
2658
2659 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2655.833 kb on + strand at 2655.835 kb on + strand at 2655.835 kb on + strand at 2655.835 kb on + strand at 2655.866 kb on - strand at 2655.904 kb on + strand at 2655.910 kb on + strand at 2655.911 kb on - strand at 2655.926 kb on - strand at 2655.982 kb on + strand at 2655.983 kb on - strand at 2655.989 kb on - strand at 2655.989 kb on - strand at 2655.989 kb on - strand at 2656.030 kb on + strand at 2656.031 kb on - strand at 2656.048 kb on - strand at 2656.083 kb on + strand at 2656.105 kb on + strand, within CCNA_02506 at 2656.145 kb on + strand, within CCNA_02506 at 2656.153 kb on - strand, within CCNA_02506 at 2656.193 kb on - strand, within CCNA_02506 at 2656.220 kb on - strand at 2656.221 kb on + strand at 2656.259 kb on - strand at 2656.384 kb on - strand at 2656.671 kb on - strand at 2656.671 kb on - strand at 2656.676 kb on + strand at 2656.677 kb on - strand at 2656.697 kb on - strand at 2656.801 kb on + strand, within CCNA_02507 at 2656.801 kb on + strand, within CCNA_02507 at 2656.809 kb on - strand, within CCNA_02507 at 2656.932 kb on + strand, within CCNA_02507 at 2656.958 kb on + strand, within CCNA_02507 at 2656.972 kb on + strand, within CCNA_02507 at 2656.980 kb on - strand, within CCNA_02507 at 2656.980 kb on - strand, within CCNA_02507 at 2656.980 kb on - strand, within CCNA_02507 at 2657.008 kb on - strand, within CCNA_02507 at 2657.045 kb on - strand, within CCNA_02507 at 2657.051 kb on - strand, within CCNA_02507 at 2657.060 kb on + strand, within CCNA_02507 at 2657.242 kb on + strand, within CCNA_02507 at 2657.270 kb on + strand, within CCNA_02507 at 2657.295 kb on + strand, within CCNA_02507 at 2657.311 kb on - strand, within CCNA_02507 at 2657.317 kb on - strand, within CCNA_02507 at 2657.380 kb on + strand, within CCNA_02507 at 2657.380 kb on + strand, within CCNA_02507 at 2657.384 kb on - strand, within CCNA_02507 at 2657.388 kb on - strand, within CCNA_02507 at 2657.390 kb on + strand, within CCNA_02507 at 2657.482 kb on - strand, within CCNA_02507 at 2657.489 kb on + strand, within CCNA_02507 at 2657.497 kb on - strand, within CCNA_02507 at 2657.524 kb on + strand, within CCNA_02507 at 2657.532 kb on - strand, within CCNA_02507 at 2657.548 kb on - strand, within CCNA_02507 at 2657.558 kb on + strand, within CCNA_02507 at 2657.560 kb on + strand, within CCNA_02507 at 2657.560 kb on + strand, within CCNA_02507 at 2657.568 kb on - strand, within CCNA_02507 at 2657.591 kb on + strand, within CCNA_02507 at 2657.599 kb on - strand, within CCNA_02507 at 2657.655 kb on + strand, within CCNA_02507 at 2657.666 kb on + strand, within CCNA_02507 at 2657.674 kb on - strand, within CCNA_02507 at 2657.765 kb on + strand, within CCNA_02507 at 2657.770 kb on + strand, within CCNA_02507 at 2657.773 kb on - strand, within CCNA_02507 at 2657.821 kb on + strand, within CCNA_02507 at 2657.821 kb on + strand, within CCNA_02507 at 2657.826 kb on + strand, within CCNA_02507 at 2657.826 kb on + strand, within CCNA_02507 at 2657.834 kb on - strand, within CCNA_02507 at 2657.834 kb on - strand, within CCNA_02507 at 2657.864 kb on + strand, within CCNA_02507 at 2657.879 kb on + strand, within CCNA_02507 at 2658.087 kb on + strand at 2658.094 kb on + strand at 2658.102 kb on - strand at 2658.125 kb on + strand at 2658.146 kb on - strand at 2658.148 kb on + strand at 2658.148 kb on + strand at 2658.148 kb on + strand at 2658.156 kb on - strand at 2658.212 kb on - strand at 2658.232 kb on - strand at 2658.237 kb on + strand at 2658.237 kb on - strand at 2658.239 kb on + strand at 2658.239 kb on + strand at 2658.247 kb on - strand at 2658.259 kb on - strand at 2658.273 kb on + strand at 2658.281 kb on - strand at 2658.309 kb on - strand at 2658.314 kb on - strand at 2658.328 kb on + strand at 2658.331 kb on - strand at 2658.350 kb on + strand at 2658.421 kb on + strand at 2658.426 kb on + strand at 2658.426 kb on + strand at 2658.429 kb on - strand at 2658.434 kb on - strand at 2658.434 kb on - strand at 2658.434 kb on - strand at 2658.451 kb on + strand at 2658.456 kb on + strand at 2658.456 kb on + strand at 2658.456 kb on + strand at 2658.461 kb on + strand at 2658.464 kb on - strand at 2658.464 kb on - strand at 2658.471 kb on + strand, within CCNA_02508 at 2658.479 kb on - strand, within CCNA_02508 at 2658.484 kb on - strand, within CCNA_02508 at 2658.519 kb on + strand, within CCNA_02508 at 2658.545 kb on + strand, within CCNA_02508 at 2658.594 kb on - strand, within CCNA_02508 at 2658.611 kb on - strand, within CCNA_02508 at 2658.651 kb on + strand, within CCNA_02508 at 2658.651 kb on + strand, within CCNA_02508 at 2658.651 kb on + strand, within CCNA_02508 at 2658.680 kb on + strand, within CCNA_02508 at 2658.693 kb on + strand, within CCNA_02508 at 2658.693 kb on + strand, within CCNA_02508 at 2658.750 kb on + strand, within CCNA_02508 at 2658.758 kb on - strand, within CCNA_02508 at 2658.803 kb on - strand, within CCNA_02508 at 2658.825 kb on + strand, within CCNA_02508 at 2658.830 kb on + strand, within CCNA_02508 at 2658.830 kb on + strand, within CCNA_02508 at 2658.830 kb on + strand, within CCNA_02508 at 2658.830 kb on + strand, within CCNA_02508 at 2658.830 kb on + strand, within CCNA_02508 at 2658.838 kb on - strand, within CCNA_02508 at 2658.859 kb on - strand, within CCNA_02508 at 2658.938 kb on - strand, within CCNA_02508 at 2658.966 kb on - strand, within CCNA_02508 at 2658.971 kb on - strand, within CCNA_02508 at 2659.007 kb on - strand, within CCNA_02508 at 2659.023 kb on - strand, within CCNA_02508
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,655,833 + -0.2 2,655,835 + +0.0 2,655,835 + +0.0 2,655,835 + -0.1 2,655,866 - -1.2 2,655,904 + -3.0 2,655,910 + -0.9 2,655,911 - +0.3 2,655,926 - +0.4 2,655,982 + -1.1 2,655,983 - -0.5 2,655,989 - -0.2 2,655,989 - -0.5 2,655,989 - -0.6 2,656,030 + -0.1 2,656,031 - +0.4 2,656,048 - -0.2 2,656,083 + +0.1 2,656,105 + CCNA_02506 0.22 +0.9 2,656,145 + CCNA_02506 0.50 -0.2 2,656,153 - CCNA_02506 0.56 +1.2 2,656,193 - CCNA_02506 0.84 -0.6 2,656,220 - -0.2 2,656,221 + +0.1 2,656,259 - +0.1 2,656,384 - -0.2 2,656,671 - +0.7 2,656,671 - -0.9 2,656,676 + -0.3 2,656,677 - -0.1 2,656,697 - +1.0 2,656,801 + CCNA_02507 0.10 +0.4 2,656,801 + CCNA_02507 0.10 -0.1 2,656,809 - CCNA_02507 0.11 -0.6 2,656,932 + CCNA_02507 0.19 -0.2 2,656,958 + CCNA_02507 0.21 +0.0 2,656,972 + CCNA_02507 0.21 +0.0 2,656,980 - CCNA_02507 0.22 +0.3 2,656,980 - CCNA_02507 0.22 -0.8 2,656,980 - CCNA_02507 0.22 +0.4 2,657,008 - CCNA_02507 0.24 +0.1 2,657,045 - CCNA_02507 0.26 -0.1 2,657,051 - CCNA_02507 0.27 -0.3 2,657,060 + CCNA_02507 0.27 +0.4 2,657,242 + CCNA_02507 0.39 +0.4 2,657,270 + CCNA_02507 0.41 +0.3 2,657,295 + CCNA_02507 0.43 -1.2 2,657,311 - CCNA_02507 0.44 -0.5 2,657,317 - CCNA_02507 0.44 +0.3 2,657,380 + CCNA_02507 0.49 +0.7 2,657,380 + CCNA_02507 0.49 +0.3 2,657,384 - CCNA_02507 0.49 +0.1 2,657,388 - CCNA_02507 0.49 +0.5 2,657,390 + CCNA_02507 0.49 -0.4 2,657,482 - CCNA_02507 0.55 +0.1 2,657,489 + CCNA_02507 0.56 +1.0 2,657,497 - CCNA_02507 0.56 -0.3 2,657,524 + CCNA_02507 0.58 +0.2 2,657,532 - CCNA_02507 0.59 -0.4 2,657,548 - CCNA_02507 0.60 +0.4 2,657,558 + CCNA_02507 0.60 -0.4 2,657,560 + CCNA_02507 0.60 +1.2 2,657,560 + CCNA_02507 0.60 +0.1 2,657,568 - CCNA_02507 0.61 +0.1 2,657,591 + CCNA_02507 0.63 -0.5 2,657,599 - CCNA_02507 0.63 -0.7 2,657,655 + CCNA_02507 0.67 +0.7 2,657,666 + CCNA_02507 0.68 -0.6 2,657,674 - CCNA_02507 0.68 -0.9 2,657,765 + CCNA_02507 0.74 +0.4 2,657,770 + CCNA_02507 0.74 +0.2 2,657,773 - CCNA_02507 0.75 +1.1 2,657,821 + CCNA_02507 0.78 +0.3 2,657,821 + CCNA_02507 0.78 +1.3 2,657,826 + CCNA_02507 0.78 -0.1 2,657,826 + CCNA_02507 0.78 -0.2 2,657,834 - CCNA_02507 0.79 -0.8 2,657,834 - CCNA_02507 0.79 +0.4 2,657,864 + CCNA_02507 0.81 +0.6 2,657,879 + CCNA_02507 0.82 +0.9 2,658,087 + -0.2 2,658,094 + +0.4 2,658,102 - -0.5 2,658,125 + -0.4 2,658,146 - +0.7 2,658,148 + -0.1 2,658,148 + +0.1 2,658,148 + +0.3 2,658,156 - -1.6 2,658,212 - -1.5 2,658,232 - -0.4 2,658,237 + -0.7 2,658,237 - -2.0 2,658,239 + +0.4 2,658,239 + +1.5 2,658,247 - -0.9 2,658,259 - +0.0 2,658,273 + +0.4 2,658,281 - -0.4 2,658,309 - +0.1 2,658,314 - +0.2 2,658,328 + +0.7 2,658,331 - -0.2 2,658,350 + +0.4 2,658,421 + -0.1 2,658,426 + -0.3 2,658,426 + +1.2 2,658,429 - -2.5 2,658,434 - +0.1 2,658,434 - -1.1 2,658,434 - -0.3 2,658,451 + +0.2 2,658,456 + -0.1 2,658,456 + +1.6 2,658,456 + +0.7 2,658,461 + +0.1 2,658,464 - -0.6 2,658,464 - +0.6 2,658,471 + CCNA_02508 0.10 +1.1 2,658,479 - CCNA_02508 0.11 -0.7 2,658,484 - CCNA_02508 0.11 -0.3 2,658,519 + CCNA_02508 0.14 +0.3 2,658,545 + CCNA_02508 0.16 -1.0 2,658,594 - CCNA_02508 0.20 -0.0 2,658,611 - CCNA_02508 0.21 -0.5 2,658,651 + CCNA_02508 0.24 +0.6 2,658,651 + CCNA_02508 0.24 -0.5 2,658,651 + CCNA_02508 0.24 +0.2 2,658,680 + CCNA_02508 0.27 -0.1 2,658,693 + CCNA_02508 0.28 +0.4 2,658,693 + CCNA_02508 0.28 +0.5 2,658,750 + CCNA_02508 0.32 +0.2 2,658,758 - CCNA_02508 0.33 +0.7 2,658,803 - CCNA_02508 0.37 +0.4 2,658,825 + CCNA_02508 0.38 +0.9 2,658,830 + CCNA_02508 0.39 +0.5 2,658,830 + CCNA_02508 0.39 +1.1 2,658,830 + CCNA_02508 0.39 -0.4 2,658,830 + CCNA_02508 0.39 +0.4 2,658,830 + CCNA_02508 0.39 +0.5 2,658,838 - CCNA_02508 0.39 +1.0 2,658,859 - CCNA_02508 0.41 -1.0 2,658,938 - CCNA_02508 0.47 -0.1 2,658,966 - CCNA_02508 0.49 -0.1 2,658,971 - CCNA_02508 0.50 -0.2 2,659,007 - CCNA_02508 0.53 -0.2 2,659,023 - CCNA_02508 0.54 -0.7
Or see this region's nucleotide sequence