Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02487 and CCNA_02488 are separated by 6 nucleotides CCNA_02488 and CCNA_02489 overlap by 1 nucleotides CCNA_02489 and CCNA_02490 overlap by 4 nucleotides
CCNA_02487: CCNA_02487 - 4-hydroxybenzoate 3-monooxygenase, at 2,635,157 to 2,636,377
_02487
CCNA_02488: CCNA_02488 - acetate/3-ketoacid CoA transferase, subunit A, at 2,636,384 to 2,637,121
_02488
CCNA_02489: CCNA_02489 - acetate/3-ketoacid CoA transferase, subunit B, at 2,637,121 to 2,637,768
_02489
CCNA_02490: CCNA_02490 - 3-ketoacyl-CoA thiolase, at 2,637,765 to 2,638,964
_02490
Position (kb)
2636
2637
2638 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2635.396 kb on - strand, within CCNA_02487 at 2635.435 kb on - strand, within CCNA_02487 at 2635.504 kb on - strand, within CCNA_02487 at 2635.504 kb on - strand, within CCNA_02487 at 2635.536 kb on - strand, within CCNA_02487 at 2635.536 kb on - strand, within CCNA_02487 at 2635.544 kb on - strand, within CCNA_02487 at 2635.613 kb on + strand, within CCNA_02487 at 2635.695 kb on + strand, within CCNA_02487 at 2635.714 kb on - strand, within CCNA_02487 at 2635.728 kb on + strand, within CCNA_02487 at 2635.736 kb on - strand, within CCNA_02487 at 2635.783 kb on - strand, within CCNA_02487 at 2635.798 kb on + strand, within CCNA_02487 at 2635.798 kb on + strand, within CCNA_02487 at 2635.806 kb on - strand, within CCNA_02487 at 2635.806 kb on - strand, within CCNA_02487 at 2635.816 kb on - strand, within CCNA_02487 at 2635.829 kb on - strand, within CCNA_02487 at 2635.868 kb on + strand, within CCNA_02487 at 2635.869 kb on - strand, within CCNA_02487 at 2635.915 kb on + strand, within CCNA_02487 at 2635.915 kb on + strand, within CCNA_02487 at 2636.086 kb on + strand, within CCNA_02487 at 2636.092 kb on + strand, within CCNA_02487 at 2636.094 kb on - strand, within CCNA_02487 at 2636.101 kb on - strand, within CCNA_02487 at 2636.118 kb on + strand, within CCNA_02487 at 2636.128 kb on + strand, within CCNA_02487 at 2636.128 kb on + strand, within CCNA_02487 at 2636.128 kb on + strand, within CCNA_02487 at 2636.128 kb on + strand, within CCNA_02487 at 2636.136 kb on - strand, within CCNA_02487 at 2636.140 kb on + strand, within CCNA_02487 at 2636.141 kb on + strand, within CCNA_02487 at 2636.163 kb on + strand, within CCNA_02487 at 2636.171 kb on - strand, within CCNA_02487 at 2636.229 kb on + strand, within CCNA_02487 at 2636.239 kb on + strand, within CCNA_02487 at 2636.267 kb on - strand at 2636.274 kb on + strand at 2636.286 kb on + strand at 2636.311 kb on + strand at 2636.361 kb on + strand at 2636.369 kb on - strand at 2636.371 kb on + strand at 2636.371 kb on + strand at 2636.372 kb on + strand at 2636.372 kb on + strand at 2636.374 kb on + strand at 2636.380 kb on - strand at 2636.381 kb on + strand at 2636.381 kb on - strand at 2636.408 kb on + strand at 2636.408 kb on + strand at 2636.416 kb on - strand at 2636.416 kb on - strand at 2636.416 kb on - strand at 2636.416 kb on - strand at 2636.429 kb on + strand at 2636.429 kb on + strand at 2636.429 kb on + strand at 2636.429 kb on + strand at 2636.429 kb on + strand at 2636.437 kb on - strand at 2636.437 kb on - strand at 2636.437 kb on - strand at 2636.437 kb on - strand at 2636.437 kb on - strand at 2636.459 kb on + strand, within CCNA_02488 at 2636.475 kb on + strand, within CCNA_02488 at 2636.475 kb on + strand, within CCNA_02488 at 2636.538 kb on + strand, within CCNA_02488 at 2636.538 kb on + strand, within CCNA_02488 at 2636.546 kb on - strand, within CCNA_02488 at 2636.574 kb on + strand, within CCNA_02488 at 2636.575 kb on - strand, within CCNA_02488 at 2636.583 kb on + strand, within CCNA_02488 at 2636.591 kb on + strand, within CCNA_02488 at 2636.599 kb on - strand, within CCNA_02488 at 2636.599 kb on - strand, within CCNA_02488 at 2636.640 kb on + strand, within CCNA_02488 at 2636.657 kb on - strand, within CCNA_02488 at 2636.658 kb on - strand, within CCNA_02488 at 2636.659 kb on + strand, within CCNA_02488 at 2636.667 kb on - strand, within CCNA_02488 at 2636.667 kb on - strand, within CCNA_02488 at 2636.684 kb on - strand, within CCNA_02488 at 2636.716 kb on + strand, within CCNA_02488 at 2636.757 kb on - strand, within CCNA_02488 at 2636.785 kb on - strand, within CCNA_02488 at 2636.817 kb on + strand, within CCNA_02488 at 2636.825 kb on - strand, within CCNA_02488 at 2636.832 kb on + strand, within CCNA_02488 at 2636.844 kb on + strand, within CCNA_02488 at 2636.902 kb on + strand, within CCNA_02488 at 2636.950 kb on + strand, within CCNA_02488 at 2637.035 kb on - strand, within CCNA_02488 at 2637.092 kb on + strand at 2637.110 kb on - strand at 2637.122 kb on - strand at 2637.132 kb on - strand at 2637.203 kb on + strand, within CCNA_02489 at 2637.211 kb on - strand, within CCNA_02489 at 2637.243 kb on - strand, within CCNA_02489 at 2637.304 kb on + strand, within CCNA_02489 at 2637.305 kb on - strand, within CCNA_02489 at 2637.308 kb on + strand, within CCNA_02489 at 2637.308 kb on + strand, within CCNA_02489 at 2637.308 kb on + strand, within CCNA_02489 at 2637.308 kb on + strand, within CCNA_02489 at 2637.318 kb on + strand, within CCNA_02489 at 2637.318 kb on + strand, within CCNA_02489 at 2637.318 kb on + strand, within CCNA_02489 at 2637.326 kb on - strand, within CCNA_02489 at 2637.326 kb on - strand, within CCNA_02489 at 2637.326 kb on - strand, within CCNA_02489 at 2637.330 kb on + strand, within CCNA_02489 at 2637.334 kb on - strand, within CCNA_02489 at 2637.334 kb on - strand, within CCNA_02489 at 2637.355 kb on + strand, within CCNA_02489 at 2637.363 kb on - strand, within CCNA_02489 at 2637.364 kb on - strand, within CCNA_02489 at 2637.376 kb on + strand, within CCNA_02489 at 2637.376 kb on + strand, within CCNA_02489 at 2637.376 kb on + strand, within CCNA_02489 at 2637.384 kb on - strand, within CCNA_02489 at 2637.384 kb on - strand, within CCNA_02489 at 2637.421 kb on + strand, within CCNA_02489 at 2637.421 kb on + strand, within CCNA_02489 at 2637.442 kb on + strand, within CCNA_02489 at 2637.442 kb on + strand, within CCNA_02489 at 2637.442 kb on + strand, within CCNA_02489 at 2637.493 kb on + strand, within CCNA_02489 at 2637.506 kb on + strand, within CCNA_02489 at 2637.511 kb on + strand, within CCNA_02489 at 2637.513 kb on - strand, within CCNA_02489 at 2637.513 kb on - strand, within CCNA_02489 at 2637.576 kb on - strand, within CCNA_02489 at 2637.604 kb on - strand, within CCNA_02489 at 2637.609 kb on - strand, within CCNA_02489 at 2637.609 kb on - strand, within CCNA_02489 at 2637.643 kb on - strand, within CCNA_02489 at 2637.643 kb on - strand, within CCNA_02489 at 2637.705 kb on + strand at 2637.729 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,635,396 - CCNA_02487 0.20 -0.9 2,635,435 - CCNA_02487 0.23 +0.4 2,635,504 - CCNA_02487 0.28 -2.1 2,635,504 - CCNA_02487 0.28 -0.3 2,635,536 - CCNA_02487 0.31 -1.8 2,635,536 - CCNA_02487 0.31 -0.4 2,635,544 - CCNA_02487 0.32 -1.1 2,635,613 + CCNA_02487 0.37 -0.6 2,635,695 + CCNA_02487 0.44 -1.0 2,635,714 - CCNA_02487 0.46 -1.3 2,635,728 + CCNA_02487 0.47 +0.2 2,635,736 - CCNA_02487 0.47 -1.1 2,635,783 - CCNA_02487 0.51 +1.1 2,635,798 + CCNA_02487 0.52 -1.5 2,635,798 + CCNA_02487 0.52 -1.2 2,635,806 - CCNA_02487 0.53 +0.4 2,635,806 - CCNA_02487 0.53 -1.4 2,635,816 - CCNA_02487 0.54 +0.4 2,635,829 - CCNA_02487 0.55 -0.3 2,635,868 + CCNA_02487 0.58 -1.0 2,635,869 - CCNA_02487 0.58 +0.2 2,635,915 + CCNA_02487 0.62 +0.2 2,635,915 + CCNA_02487 0.62 -0.9 2,636,086 + CCNA_02487 0.76 -2.3 2,636,092 + CCNA_02487 0.77 +0.9 2,636,094 - CCNA_02487 0.77 -1.0 2,636,101 - CCNA_02487 0.77 -1.2 2,636,118 + CCNA_02487 0.79 -0.5 2,636,128 + CCNA_02487 0.80 -0.0 2,636,128 + CCNA_02487 0.80 -0.2 2,636,128 + CCNA_02487 0.80 -0.9 2,636,128 + CCNA_02487 0.80 -0.7 2,636,136 - CCNA_02487 0.80 -0.6 2,636,140 + CCNA_02487 0.81 +0.1 2,636,141 + CCNA_02487 0.81 +0.4 2,636,163 + CCNA_02487 0.82 -1.0 2,636,171 - CCNA_02487 0.83 -0.3 2,636,229 + CCNA_02487 0.88 +0.4 2,636,239 + CCNA_02487 0.89 -1.1 2,636,267 - +0.2 2,636,274 + +0.9 2,636,286 + +0.8 2,636,311 + -1.0 2,636,361 + -0.2 2,636,369 - -0.1 2,636,371 + +0.6 2,636,371 + -1.4 2,636,372 + -0.1 2,636,372 + +0.2 2,636,374 + +0.2 2,636,380 - -0.3 2,636,381 + -0.0 2,636,381 - -0.6 2,636,408 + -0.6 2,636,408 + -0.3 2,636,416 - -1.5 2,636,416 - -1.3 2,636,416 - +1.6 2,636,416 - -0.9 2,636,429 + -1.1 2,636,429 + -0.1 2,636,429 + -2.0 2,636,429 + -0.8 2,636,429 + -0.0 2,636,437 - -1.2 2,636,437 - -0.1 2,636,437 - +0.6 2,636,437 - +0.8 2,636,437 - -0.8 2,636,459 + CCNA_02488 0.10 -1.4 2,636,475 + CCNA_02488 0.12 -0.9 2,636,475 + CCNA_02488 0.12 -1.0 2,636,538 + CCNA_02488 0.21 +0.3 2,636,538 + CCNA_02488 0.21 -0.7 2,636,546 - CCNA_02488 0.22 +0.6 2,636,574 + CCNA_02488 0.26 -1.4 2,636,575 - CCNA_02488 0.26 -1.2 2,636,583 + CCNA_02488 0.27 -0.5 2,636,591 + CCNA_02488 0.28 +2.7 2,636,599 - CCNA_02488 0.29 -0.6 2,636,599 - CCNA_02488 0.29 +0.2 2,636,640 + CCNA_02488 0.35 -0.8 2,636,657 - CCNA_02488 0.37 -1.0 2,636,658 - CCNA_02488 0.37 -0.6 2,636,659 + CCNA_02488 0.37 +0.7 2,636,667 - CCNA_02488 0.38 -2.2 2,636,667 - CCNA_02488 0.38 +0.3 2,636,684 - CCNA_02488 0.41 -2.9 2,636,716 + CCNA_02488 0.45 -0.5 2,636,757 - CCNA_02488 0.51 -0.4 2,636,785 - CCNA_02488 0.54 +0.2 2,636,817 + CCNA_02488 0.59 -1.9 2,636,825 - CCNA_02488 0.60 +1.0 2,636,832 + CCNA_02488 0.61 -0.5 2,636,844 + CCNA_02488 0.62 -1.1 2,636,902 + CCNA_02488 0.70 -0.9 2,636,950 + CCNA_02488 0.77 -1.9 2,637,035 - CCNA_02488 0.88 +0.2 2,637,092 + -0.9 2,637,110 - +1.4 2,637,122 - -1.1 2,637,132 - -0.5 2,637,203 + CCNA_02489 0.13 +0.9 2,637,211 - CCNA_02489 0.14 -0.6 2,637,243 - CCNA_02489 0.19 -0.3 2,637,304 + CCNA_02489 0.28 -1.3 2,637,305 - CCNA_02489 0.28 +0.0 2,637,308 + CCNA_02489 0.29 +0.7 2,637,308 + CCNA_02489 0.29 -0.6 2,637,308 + CCNA_02489 0.29 -0.6 2,637,308 + CCNA_02489 0.29 -0.8 2,637,318 + CCNA_02489 0.30 +0.9 2,637,318 + CCNA_02489 0.30 +0.5 2,637,318 + CCNA_02489 0.30 +0.3 2,637,326 - CCNA_02489 0.32 -0.2 2,637,326 - CCNA_02489 0.32 -1.1 2,637,326 - CCNA_02489 0.32 -0.9 2,637,330 + CCNA_02489 0.32 -0.4 2,637,334 - CCNA_02489 0.33 -0.2 2,637,334 - CCNA_02489 0.33 -0.0 2,637,355 + CCNA_02489 0.36 -1.4 2,637,363 - CCNA_02489 0.37 -1.3 2,637,364 - CCNA_02489 0.38 -0.2 2,637,376 + CCNA_02489 0.39 +1.0 2,637,376 + CCNA_02489 0.39 -1.3 2,637,376 + CCNA_02489 0.39 +0.4 2,637,384 - CCNA_02489 0.41 -0.7 2,637,384 - CCNA_02489 0.41 -0.5 2,637,421 + CCNA_02489 0.46 -1.2 2,637,421 + CCNA_02489 0.46 -0.1 2,637,442 + CCNA_02489 0.50 +0.0 2,637,442 + CCNA_02489 0.50 +0.4 2,637,442 + CCNA_02489 0.50 -0.7 2,637,493 + CCNA_02489 0.57 +0.0 2,637,506 + CCNA_02489 0.59 +1.1 2,637,511 + CCNA_02489 0.60 +0.4 2,637,513 - CCNA_02489 0.60 -0.5 2,637,513 - CCNA_02489 0.60 -0.8 2,637,576 - CCNA_02489 0.70 +0.3 2,637,604 - CCNA_02489 0.75 -0.2 2,637,609 - CCNA_02489 0.75 -0.7 2,637,609 - CCNA_02489 0.75 +1.0 2,637,643 - CCNA_02489 0.81 -0.9 2,637,643 - CCNA_02489 0.81 -2.3 2,637,705 + +0.4 2,637,729 - +0.0
Or see this region's nucleotide sequence