Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02460 and CCNA_02461 are separated by 36 nucleotides CCNA_02461 and CCNA_02462 are separated by 183 nucleotides CCNA_02462 and CCNA_02463 are separated by 358 nucleotides
CCNA_02460: CCNA_02460 - hypothetical protein, at 2,603,208 to 2,603,669
_02460
CCNA_02461: CCNA_02461 - hypothetical protein, at 2,603,706 to 2,604,170
_02461
CCNA_02462: CCNA_02462 - hypothetical protein, at 2,604,354 to 2,604,671
_02462
CCNA_02463: CCNA_02463 - UDP-N-acetylglucosamine 4-epimerase, at 2,605,030 to 2,606,004
_02463
Position (kb)
2604
2605 Strain fitness (log2 ratio)
-1
0
1
2 at 2603.372 kb on - strand, within CCNA_02460 at 2603.393 kb on + strand, within CCNA_02460 at 2603.401 kb on - strand, within CCNA_02460 at 2603.401 kb on - strand, within CCNA_02460 at 2603.401 kb on - strand, within CCNA_02460 at 2603.419 kb on + strand, within CCNA_02460 at 2603.421 kb on + strand, within CCNA_02460 at 2603.424 kb on - strand, within CCNA_02460 at 2603.424 kb on - strand, within CCNA_02460 at 2603.440 kb on - strand, within CCNA_02460 at 2603.471 kb on + strand, within CCNA_02460 at 2603.478 kb on + strand, within CCNA_02460 at 2603.479 kb on + strand, within CCNA_02460 at 2603.479 kb on - strand, within CCNA_02460 at 2603.487 kb on - strand, within CCNA_02460 at 2603.489 kb on + strand, within CCNA_02460 at 2603.503 kb on + strand, within CCNA_02460 at 2603.539 kb on - strand, within CCNA_02460 at 2603.548 kb on - strand, within CCNA_02460 at 2603.548 kb on - strand, within CCNA_02460 at 2603.549 kb on + strand, within CCNA_02460 at 2603.549 kb on + strand, within CCNA_02460 at 2603.577 kb on + strand, within CCNA_02460 at 2603.577 kb on - strand, within CCNA_02460 at 2603.577 kb on - strand, within CCNA_02460 at 2603.599 kb on + strand, within CCNA_02460 at 2603.605 kb on + strand, within CCNA_02460 at 2603.616 kb on + strand, within CCNA_02460 at 2603.623 kb on + strand at 2603.657 kb on - strand at 2603.665 kb on + strand at 2603.675 kb on + strand at 2603.683 kb on - strand at 2603.683 kb on - strand at 2603.717 kb on - strand at 2603.742 kb on + strand at 2603.747 kb on + strand at 2603.769 kb on + strand, within CCNA_02461 at 2603.790 kb on - strand, within CCNA_02461 at 2603.812 kb on - strand, within CCNA_02461 at 2603.832 kb on - strand, within CCNA_02461 at 2603.856 kb on + strand, within CCNA_02461 at 2603.856 kb on + strand, within CCNA_02461 at 2603.935 kb on + strand, within CCNA_02461 at 2603.940 kb on + strand, within CCNA_02461 at 2603.940 kb on + strand, within CCNA_02461 at 2603.948 kb on - strand, within CCNA_02461 at 2603.948 kb on - strand, within CCNA_02461 at 2603.948 kb on - strand, within CCNA_02461 at 2603.988 kb on - strand, within CCNA_02461 at 2604.002 kb on - strand, within CCNA_02461 at 2604.045 kb on - strand, within CCNA_02461 at 2604.058 kb on - strand, within CCNA_02461 at 2604.114 kb on + strand, within CCNA_02461 at 2604.185 kb on + strand at 2604.185 kb on + strand at 2604.244 kb on + strand at 2604.287 kb on + strand at 2604.364 kb on + strand at 2604.364 kb on + strand at 2604.372 kb on - strand at 2604.393 kb on + strand, within CCNA_02462 at 2604.409 kb on - strand, within CCNA_02462 at 2604.422 kb on - strand, within CCNA_02462 at 2604.444 kb on - strand, within CCNA_02462 at 2604.518 kb on - strand, within CCNA_02462 at 2604.518 kb on - strand, within CCNA_02462 at 2604.548 kb on + strand, within CCNA_02462 at 2604.566 kb on + strand, within CCNA_02462 at 2604.566 kb on - strand, within CCNA_02462 at 2604.572 kb on + strand, within CCNA_02462 at 2604.633 kb on - strand, within CCNA_02462 at 2604.665 kb on + strand at 2604.689 kb on - strand at 2604.762 kb on + strand at 2604.770 kb on - strand at 2604.840 kb on - strand at 2604.844 kb on + strand at 2604.871 kb on - strand at 2604.871 kb on - strand at 2604.878 kb on - strand at 2604.910 kb on + strand at 2604.919 kb on - strand at 2604.927 kb on + strand at 2604.929 kb on - strand at 2604.935 kb on - strand at 2604.948 kb on - strand at 2604.966 kb on + strand at 2604.968 kb on + strand at 2604.993 kb on - strand at 2605.028 kb on + strand at 2605.089 kb on + strand at 2605.414 kb on + strand, within CCNA_02463 at 2605.486 kb on - strand, within CCNA_02463 at 2605.627 kb on + strand, within CCNA_02463
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,603,372 - CCNA_02460 0.35 +0.4 2,603,393 + CCNA_02460 0.40 +0.1 2,603,401 - CCNA_02460 0.42 +0.1 2,603,401 - CCNA_02460 0.42 +0.1 2,603,401 - CCNA_02460 0.42 +0.5 2,603,419 + CCNA_02460 0.46 +0.7 2,603,421 + CCNA_02460 0.46 -0.9 2,603,424 - CCNA_02460 0.47 -0.4 2,603,424 - CCNA_02460 0.47 -0.5 2,603,440 - CCNA_02460 0.50 +1.4 2,603,471 + CCNA_02460 0.57 -1.1 2,603,478 + CCNA_02460 0.58 -1.0 2,603,479 + CCNA_02460 0.59 -0.9 2,603,479 - CCNA_02460 0.59 -0.4 2,603,487 - CCNA_02460 0.60 +0.4 2,603,489 + CCNA_02460 0.61 -0.4 2,603,503 + CCNA_02460 0.64 -1.0 2,603,539 - CCNA_02460 0.72 +2.2 2,603,548 - CCNA_02460 0.74 +0.2 2,603,548 - CCNA_02460 0.74 +0.7 2,603,549 + CCNA_02460 0.74 +0.6 2,603,549 + CCNA_02460 0.74 +1.2 2,603,577 + CCNA_02460 0.80 +0.5 2,603,577 - CCNA_02460 0.80 +0.2 2,603,577 - CCNA_02460 0.80 +1.9 2,603,599 + CCNA_02460 0.85 -0.8 2,603,605 + CCNA_02460 0.86 -1.7 2,603,616 + CCNA_02460 0.88 -1.3 2,603,623 + +0.2 2,603,657 - +0.1 2,603,665 + -0.4 2,603,675 + -0.4 2,603,683 - +1.5 2,603,683 - +1.0 2,603,717 - +0.6 2,603,742 + +0.3 2,603,747 + -0.7 2,603,769 + CCNA_02461 0.14 -0.5 2,603,790 - CCNA_02461 0.18 +0.2 2,603,812 - CCNA_02461 0.23 +0.5 2,603,832 - CCNA_02461 0.27 +1.0 2,603,856 + CCNA_02461 0.32 -1.0 2,603,856 + CCNA_02461 0.32 +0.2 2,603,935 + CCNA_02461 0.49 -1.3 2,603,940 + CCNA_02461 0.50 -0.8 2,603,940 + CCNA_02461 0.50 -1.6 2,603,948 - CCNA_02461 0.52 +0.4 2,603,948 - CCNA_02461 0.52 +0.7 2,603,948 - CCNA_02461 0.52 -0.1 2,603,988 - CCNA_02461 0.61 -0.2 2,604,002 - CCNA_02461 0.64 +0.1 2,604,045 - CCNA_02461 0.73 +0.3 2,604,058 - CCNA_02461 0.76 +0.1 2,604,114 + CCNA_02461 0.88 -0.4 2,604,185 + -0.1 2,604,185 + +0.7 2,604,244 + -1.3 2,604,287 + -0.6 2,604,364 + +0.1 2,604,364 + +0.0 2,604,372 - -1.2 2,604,393 + CCNA_02462 0.12 +1.7 2,604,409 - CCNA_02462 0.17 -0.3 2,604,422 - CCNA_02462 0.21 +0.3 2,604,444 - CCNA_02462 0.28 -0.7 2,604,518 - CCNA_02462 0.52 -0.4 2,604,518 - CCNA_02462 0.52 -0.2 2,604,548 + CCNA_02462 0.61 +0.1 2,604,566 + CCNA_02462 0.67 +0.5 2,604,566 - CCNA_02462 0.67 +0.3 2,604,572 + CCNA_02462 0.69 +0.3 2,604,633 - CCNA_02462 0.88 -0.6 2,604,665 + -0.1 2,604,689 - -1.3 2,604,762 + +0.5 2,604,770 - +0.5 2,604,840 - -0.8 2,604,844 + -0.1 2,604,871 - -0.9 2,604,871 - +0.2 2,604,878 - -0.5 2,604,910 + +0.5 2,604,919 - +0.7 2,604,927 + +0.4 2,604,929 - -0.0 2,604,935 - -1.0 2,604,948 - +0.7 2,604,966 + -0.5 2,604,968 + -1.1 2,604,993 - -0.0 2,605,028 + -0.9 2,605,089 + +1.4 2,605,414 + CCNA_02463 0.39 +0.4 2,605,486 - CCNA_02463 0.47 +0.1 2,605,627 + CCNA_02463 0.61 +0.7
Or see this region's nucleotide sequence