Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02426 and CCNA_02427 overlap by 4 nucleotides CCNA_02427 and CCNA_02428 are separated by 7 nucleotides CCNA_02428 and CCNA_02429 are separated by 96 nucleotides CCNA_02429 and CCNA_02430 are separated by 2 nucleotides CCNA_02430 and CCNA_02431 are separated by 21 nucleotides
CCNA_02426: CCNA_02426 - ribonuclease, CafA family, at 2,569,003 to 2,570,064
_02426
CCNA_02427: CCNA_02427 - septum formation protein Maf, at 2,570,061 to 2,570,666
_02427
CCNA_02428: CCNA_02428 - translation initiation factor 1 (IF-1), at 2,570,674 to 2,570,892
_02428
CCNA_02429: CCNA_02429 - arsenate reductase, at 2,570,989 to 2,571,447
_02429
CCNA_02430: CCNA_02430 - conserved hypothetical cytosolic protein, at 2,571,450 to 2,571,929
_02430
CCNA_02431: CCNA_02431 - histidinol dehydrogenase, at 2,571,951 to 2,573,237
_02431
Position (kb)
2570
2571
2572 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2570.010 kb on + strand at 2570.010 kb on + strand at 2570.018 kb on + strand at 2570.051 kb on + strand at 2570.057 kb on + strand at 2570.059 kb on - strand at 2570.068 kb on + strand at 2570.076 kb on - strand at 2570.096 kb on + strand at 2570.098 kb on + strand at 2570.101 kb on + strand at 2570.108 kb on - strand at 2570.130 kb on - strand, within CCNA_02427 at 2570.177 kb on - strand, within CCNA_02427 at 2570.191 kb on + strand, within CCNA_02427 at 2570.191 kb on + strand, within CCNA_02427 at 2570.210 kb on - strand, within CCNA_02427 at 2570.224 kb on - strand, within CCNA_02427 at 2570.226 kb on + strand, within CCNA_02427 at 2570.236 kb on + strand, within CCNA_02427 at 2570.261 kb on + strand, within CCNA_02427 at 2570.309 kb on + strand, within CCNA_02427 at 2570.319 kb on + strand, within CCNA_02427 at 2570.319 kb on + strand, within CCNA_02427 at 2570.319 kb on + strand, within CCNA_02427 at 2570.319 kb on + strand, within CCNA_02427 at 2570.327 kb on - strand, within CCNA_02427 at 2570.359 kb on + strand, within CCNA_02427 at 2570.386 kb on + strand, within CCNA_02427 at 2570.386 kb on + strand, within CCNA_02427 at 2570.388 kb on - strand, within CCNA_02427 at 2570.394 kb on - strand, within CCNA_02427 at 2570.396 kb on + strand, within CCNA_02427 at 2570.443 kb on - strand, within CCNA_02427 at 2570.469 kb on - strand, within CCNA_02427 at 2570.572 kb on - strand, within CCNA_02427 at 2570.616 kb on - strand at 2570.898 kb on - strand at 2570.986 kb on - strand at 2571.001 kb on + strand at 2571.033 kb on - strand at 2571.054 kb on - strand, within CCNA_02429 at 2571.089 kb on - strand, within CCNA_02429 at 2571.099 kb on + strand, within CCNA_02429 at 2571.102 kb on - strand, within CCNA_02429 at 2571.124 kb on - strand, within CCNA_02429 at 2571.169 kb on - strand, within CCNA_02429 at 2571.182 kb on - strand, within CCNA_02429 at 2571.220 kb on - strand, within CCNA_02429 at 2571.220 kb on - strand, within CCNA_02429 at 2571.229 kb on + strand, within CCNA_02429 at 2571.237 kb on - strand, within CCNA_02429 at 2571.237 kb on - strand, within CCNA_02429 at 2571.238 kb on - strand, within CCNA_02429 at 2571.238 kb on - strand, within CCNA_02429 at 2571.239 kb on - strand, within CCNA_02429 at 2571.252 kb on + strand, within CCNA_02429 at 2571.252 kb on + strand, within CCNA_02429 at 2571.253 kb on + strand, within CCNA_02429 at 2571.266 kb on - strand, within CCNA_02429 at 2571.277 kb on - strand, within CCNA_02429 at 2571.312 kb on + strand, within CCNA_02429 at 2571.312 kb on + strand, within CCNA_02429 at 2571.320 kb on - strand, within CCNA_02429 at 2571.332 kb on - strand, within CCNA_02429 at 2571.338 kb on + strand, within CCNA_02429 at 2571.346 kb on - strand, within CCNA_02429 at 2571.346 kb on - strand, within CCNA_02429 at 2571.370 kb on - strand, within CCNA_02429 at 2571.400 kb on + strand, within CCNA_02429 at 2571.418 kb on - strand at 2571.431 kb on + strand at 2571.448 kb on + strand at 2571.469 kb on + strand at 2571.469 kb on + strand at 2571.469 kb on + strand at 2571.474 kb on + strand at 2571.474 kb on + strand at 2571.482 kb on - strand at 2571.482 kb on - strand at 2571.511 kb on + strand, within CCNA_02430 at 2571.511 kb on + strand, within CCNA_02430 at 2571.511 kb on + strand, within CCNA_02430 at 2571.511 kb on + strand, within CCNA_02430 at 2571.511 kb on + strand, within CCNA_02430 at 2571.511 kb on + strand, within CCNA_02430 at 2571.519 kb on - strand, within CCNA_02430 at 2571.519 kb on - strand, within CCNA_02430 at 2571.519 kb on - strand, within CCNA_02430 at 2571.545 kb on + strand, within CCNA_02430 at 2571.561 kb on + strand, within CCNA_02430 at 2571.582 kb on + strand, within CCNA_02430 at 2571.582 kb on + strand, within CCNA_02430 at 2571.590 kb on - strand, within CCNA_02430 at 2571.590 kb on - strand, within CCNA_02430 at 2571.590 kb on - strand, within CCNA_02430 at 2571.597 kb on - strand, within CCNA_02430 at 2571.613 kb on - strand, within CCNA_02430 at 2571.618 kb on - strand, within CCNA_02430 at 2571.626 kb on + strand, within CCNA_02430 at 2571.734 kb on + strand, within CCNA_02430 at 2571.763 kb on - strand, within CCNA_02430 at 2571.805 kb on + strand, within CCNA_02430 at 2571.813 kb on - strand, within CCNA_02430 at 2571.813 kb on - strand, within CCNA_02430 at 2571.906 kb on - strand at 2571.906 kb on - strand at 2571.917 kb on + strand at 2571.950 kb on - strand at 2571.990 kb on - strand at 2571.990 kb on - strand at 2572.003 kb on + strand at 2572.003 kb on + strand at 2572.017 kb on - strand at 2572.017 kb on - strand at 2572.022 kb on - strand at 2572.111 kb on + strand, within CCNA_02431 at 2572.176 kb on + strand, within CCNA_02431 at 2572.266 kb on - strand, within CCNA_02431 at 2572.274 kb on + strand, within CCNA_02431 at 2572.282 kb on + strand, within CCNA_02431 at 2572.282 kb on + strand, within CCNA_02431 at 2572.315 kb on + strand, within CCNA_02431 at 2572.317 kb on + strand, within CCNA_02431 at 2572.341 kb on + strand, within CCNA_02431 at 2572.341 kb on + strand, within CCNA_02431 at 2572.363 kb on + strand, within CCNA_02431 at 2572.364 kb on - strand, within CCNA_02431 at 2572.375 kb on + strand, within CCNA_02431 at 2572.375 kb on + strand, within CCNA_02431 at 2572.375 kb on + strand, within CCNA_02431 at 2572.375 kb on + strand, within CCNA_02431 at 2572.375 kb on + strand, within CCNA_02431 at 2572.383 kb on - strand, within CCNA_02431 at 2572.383 kb on - strand, within CCNA_02431 at 2572.383 kb on - strand, within CCNA_02431 at 2572.383 kb on - strand, within CCNA_02431 at 2572.390 kb on + strand, within CCNA_02431 at 2572.398 kb on - strand, within CCNA_02431 at 2572.442 kb on - strand, within CCNA_02431
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,570,010 + -0.2 2,570,010 + -0.1 2,570,018 + -0.9 2,570,051 + -0.3 2,570,057 + -0.2 2,570,059 - +0.8 2,570,068 + +0.4 2,570,076 - -0.3 2,570,096 + +2.3 2,570,098 + -1.6 2,570,101 + -1.5 2,570,108 - -1.4 2,570,130 - CCNA_02427 0.11 +1.1 2,570,177 - CCNA_02427 0.19 +0.1 2,570,191 + CCNA_02427 0.21 +0.4 2,570,191 + CCNA_02427 0.21 +0.3 2,570,210 - CCNA_02427 0.25 -0.2 2,570,224 - CCNA_02427 0.27 +0.2 2,570,226 + CCNA_02427 0.27 +0.0 2,570,236 + CCNA_02427 0.29 -1.0 2,570,261 + CCNA_02427 0.33 -0.8 2,570,309 + CCNA_02427 0.41 +0.0 2,570,319 + CCNA_02427 0.43 +0.6 2,570,319 + CCNA_02427 0.43 -0.5 2,570,319 + CCNA_02427 0.43 +0.1 2,570,319 + CCNA_02427 0.43 -0.2 2,570,327 - CCNA_02427 0.44 +0.4 2,570,359 + CCNA_02427 0.49 -0.8 2,570,386 + CCNA_02427 0.54 +0.2 2,570,386 + CCNA_02427 0.54 -0.8 2,570,388 - CCNA_02427 0.54 +1.4 2,570,394 - CCNA_02427 0.55 +0.4 2,570,396 + CCNA_02427 0.55 +0.0 2,570,443 - CCNA_02427 0.63 -0.4 2,570,469 - CCNA_02427 0.67 +0.5 2,570,572 - CCNA_02427 0.84 +0.1 2,570,616 - +0.5 2,570,898 - +0.5 2,570,986 - +0.3 2,571,001 + -0.5 2,571,033 - +0.1 2,571,054 - CCNA_02429 0.14 +0.4 2,571,089 - CCNA_02429 0.22 +0.8 2,571,099 + CCNA_02429 0.24 -2.1 2,571,102 - CCNA_02429 0.25 -0.1 2,571,124 - CCNA_02429 0.29 -0.8 2,571,169 - CCNA_02429 0.39 +0.1 2,571,182 - CCNA_02429 0.42 +0.2 2,571,220 - CCNA_02429 0.50 -0.7 2,571,220 - CCNA_02429 0.50 -1.6 2,571,229 + CCNA_02429 0.52 -0.8 2,571,237 - CCNA_02429 0.54 +0.0 2,571,237 - CCNA_02429 0.54 +0.1 2,571,238 - CCNA_02429 0.54 -0.3 2,571,238 - CCNA_02429 0.54 +0.3 2,571,239 - CCNA_02429 0.54 -1.2 2,571,252 + CCNA_02429 0.57 -1.0 2,571,252 + CCNA_02429 0.57 -0.3 2,571,253 + CCNA_02429 0.58 +0.3 2,571,266 - CCNA_02429 0.60 +0.1 2,571,277 - CCNA_02429 0.63 -1.2 2,571,312 + CCNA_02429 0.70 -1.3 2,571,312 + CCNA_02429 0.70 -0.9 2,571,320 - CCNA_02429 0.72 +0.0 2,571,332 - CCNA_02429 0.75 +0.2 2,571,338 + CCNA_02429 0.76 -3.2 2,571,346 - CCNA_02429 0.78 -0.4 2,571,346 - CCNA_02429 0.78 +1.1 2,571,370 - CCNA_02429 0.83 -0.6 2,571,400 + CCNA_02429 0.90 -0.2 2,571,418 - +0.2 2,571,431 + -0.1 2,571,448 + -0.1 2,571,469 + +0.3 2,571,469 + +2.3 2,571,469 + -1.2 2,571,474 + -0.7 2,571,474 + +0.6 2,571,482 - +0.3 2,571,482 - +0.1 2,571,511 + CCNA_02430 0.13 -0.1 2,571,511 + CCNA_02430 0.13 -1.2 2,571,511 + CCNA_02430 0.13 -2.0 2,571,511 + CCNA_02430 0.13 +0.2 2,571,511 + CCNA_02430 0.13 +0.5 2,571,511 + CCNA_02430 0.13 +1.3 2,571,519 - CCNA_02430 0.14 -0.0 2,571,519 - CCNA_02430 0.14 -0.5 2,571,519 - CCNA_02430 0.14 -1.3 2,571,545 + CCNA_02430 0.20 +0.9 2,571,561 + CCNA_02430 0.23 -1.2 2,571,582 + CCNA_02430 0.28 -0.2 2,571,582 + CCNA_02430 0.28 -1.8 2,571,590 - CCNA_02430 0.29 -0.4 2,571,590 - CCNA_02430 0.29 -0.7 2,571,590 - CCNA_02430 0.29 +0.1 2,571,597 - CCNA_02430 0.31 -0.5 2,571,613 - CCNA_02430 0.34 -0.5 2,571,618 - CCNA_02430 0.35 +0.3 2,571,626 + CCNA_02430 0.37 -0.8 2,571,734 + CCNA_02430 0.59 +0.6 2,571,763 - CCNA_02430 0.65 +0.4 2,571,805 + CCNA_02430 0.74 -0.1 2,571,813 - CCNA_02430 0.76 -1.0 2,571,813 - CCNA_02430 0.76 +0.4 2,571,906 - +0.5 2,571,906 - +0.4 2,571,917 + +0.8 2,571,950 - +0.3 2,571,990 - -0.5 2,571,990 - -0.2 2,572,003 + -1.7 2,572,003 + -0.1 2,572,017 - +0.5 2,572,017 - +0.6 2,572,022 - +0.1 2,572,111 + CCNA_02431 0.12 -1.6 2,572,176 + CCNA_02431 0.17 +1.5 2,572,266 - CCNA_02431 0.24 +0.6 2,572,274 + CCNA_02431 0.25 -0.4 2,572,282 + CCNA_02431 0.26 -0.8 2,572,282 + CCNA_02431 0.26 -0.0 2,572,315 + CCNA_02431 0.28 -0.7 2,572,317 + CCNA_02431 0.28 -0.3 2,572,341 + CCNA_02431 0.30 +0.1 2,572,341 + CCNA_02431 0.30 -0.0 2,572,363 + CCNA_02431 0.32 -1.0 2,572,364 - CCNA_02431 0.32 +0.3 2,572,375 + CCNA_02431 0.33 -0.7 2,572,375 + CCNA_02431 0.33 +0.0 2,572,375 + CCNA_02431 0.33 -1.0 2,572,375 + CCNA_02431 0.33 -0.1 2,572,375 + CCNA_02431 0.33 +0.3 2,572,383 - CCNA_02431 0.34 -1.0 2,572,383 - CCNA_02431 0.34 +0.2 2,572,383 - CCNA_02431 0.34 +0.3 2,572,383 - CCNA_02431 0.34 +0.3 2,572,390 + CCNA_02431 0.34 -0.1 2,572,398 - CCNA_02431 0.35 +0.1 2,572,442 - CCNA_02431 0.38 +0.3
Or see this region's nucleotide sequence