Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02419 and CCNA_02420 are separated by 10 nucleotides CCNA_02420 and CCNA_02421 are separated by 5 nucleotides CCNA_02421 and CCNA_02422 are separated by 913 nucleotides
CCNA_02419: CCNA_02419 - TonB1 protein, at 2,563,550 to 2,564,281
_02419
CCNA_02420: CCNA_02420 - TonB accessory protein exbD, at 2,564,292 to 2,564,726
_02420
CCNA_02421: CCNA_02421 - TonB accessory protein exbB, at 2,564,732 to 2,565,640
_02421
CCNA_02422: CCNA_02422 - short chain dehydrogenase, at 2,566,554 to 2,567,381
_02422
Position (kb)
2564
2565
2566 Strain fitness (log2 ratio)
-2
-1
0
1 at 2563.798 kb on - strand, within CCNA_02419 at 2563.802 kb on + strand, within CCNA_02419 at 2563.802 kb on + strand, within CCNA_02419 at 2563.837 kb on - strand, within CCNA_02419 at 2563.846 kb on - strand, within CCNA_02419 at 2563.999 kb on - strand, within CCNA_02419 at 2564.081 kb on + strand, within CCNA_02419 at 2564.360 kb on + strand, within CCNA_02420 at 2564.499 kb on - strand, within CCNA_02420 at 2564.771 kb on - strand at 2564.984 kb on - strand, within CCNA_02421 at 2565.033 kb on - strand, within CCNA_02421 at 2565.045 kb on + strand, within CCNA_02421 at 2565.067 kb on - strand, within CCNA_02421 at 2565.195 kb on + strand, within CCNA_02421 at 2565.374 kb on - strand, within CCNA_02421 at 2565.596 kb on + strand at 2565.711 kb on + strand at 2565.733 kb on + strand at 2565.920 kb on + strand at 2566.089 kb on - strand at 2566.187 kb on + strand at 2566.207 kb on + strand at 2566.237 kb on - strand at 2566.237 kb on - strand at 2566.260 kb on - strand at 2566.323 kb on + strand at 2566.323 kb on + strand at 2566.331 kb on - strand at 2566.349 kb on + strand at 2566.381 kb on - strand at 2566.381 kb on - strand at 2566.440 kb on - strand at 2566.524 kb on + strand at 2566.560 kb on + strand at 2566.568 kb on - strand at 2566.573 kb on - strand at 2566.606 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,563,798 - CCNA_02419 0.34 -0.4 2,563,802 + CCNA_02419 0.34 -1.2 2,563,802 + CCNA_02419 0.34 +0.0 2,563,837 - CCNA_02419 0.39 +0.3 2,563,846 - CCNA_02419 0.40 +0.1 2,563,999 - CCNA_02419 0.61 +0.6 2,564,081 + CCNA_02419 0.73 -0.0 2,564,360 + CCNA_02420 0.16 -1.6 2,564,499 - CCNA_02420 0.48 -0.8 2,564,771 - +0.5 2,564,984 - CCNA_02421 0.28 -2.0 2,565,033 - CCNA_02421 0.33 -1.8 2,565,045 + CCNA_02421 0.34 +0.0 2,565,067 - CCNA_02421 0.37 -0.9 2,565,195 + CCNA_02421 0.51 -0.1 2,565,374 - CCNA_02421 0.71 +0.8 2,565,596 + -2.4 2,565,711 + -0.3 2,565,733 + +0.4 2,565,920 + -1.6 2,566,089 - -0.6 2,566,187 + -0.0 2,566,207 + +0.6 2,566,237 - +1.4 2,566,237 - +0.8 2,566,260 - +0.8 2,566,323 + -0.3 2,566,323 + +1.7 2,566,331 - -0.6 2,566,349 + -0.5 2,566,381 - -1.4 2,566,381 - +0.9 2,566,440 - +1.2 2,566,524 + +0.2 2,566,560 + -1.1 2,566,568 - -1.3 2,566,573 - +1.7 2,566,606 - -0.8
Or see this region's nucleotide sequence